Wall clock time and date at job start Tue Mar 31 2020 22:04:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86799 * 119.99796 * 2 1 4 4 H 1.48501 * 109.47341 * 270.00196 * 3 2 1 5 5 H 1.48500 * 109.47417 * 30.00234 * 3 2 1 6 6 H 1.48505 * 109.46881 * 150.00019 * 3 2 1 7 7 C 1.39942 * 120.00131 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00052 * 192.80068 * 7 2 1 9 9 C 1.41403 * 119.99761 * 12.80971 * 7 2 1 10 10 C 1.40712 * 120.24014 * 210.02149 * 9 7 2 11 11 C 1.37619 * 119.74504 * 179.69809 * 10 9 7 12 12 C 1.38635 * 120.24485 * 0.27673 * 11 10 9 13 13 C 1.50704 * 119.74941 * 179.97438 * 12 11 10 14 14 N 1.46900 * 109.47204 * 89.99628 * 13 12 11 15 15 C 1.46467 * 111.00119 * 65.39285 * 14 13 12 16 16 C 1.53182 * 109.90076 * 163.00024 * 15 14 13 17 17 S 1.81813 * 108.67730 * 62.63429 * 16 15 14 18 18 O 1.42097 * 108.69878 * 193.42810 * 17 16 15 19 19 O 1.42102 * 108.70178 * 61.94395 * 17 16 15 20 20 C 1.81811 * 101.02192 * 307.68291 * 17 16 15 21 21 C 1.46468 * 111.00023 * 299.53214 * 14 13 12 22 22 H 1.09004 * 109.39843 * 76.95647 * 21 14 13 23 23 C 1.50705 * 109.40236 * 317.13469 * 21 14 13 24 24 O 1.20820 * 119.99545 * 322.45663 * 23 21 14 25 25 O 1.34229 * 119.99961 * 142.46119 * 23 21 14 26 26 C 1.38637 * 120.50414 * 359.97438 * 12 11 10 27 27 C 1.37614 * 120.24788 * 0.02830 * 26 12 11 28 28 H 0.97003 * 119.99906 * 359.97438 * 1 2 3 29 29 H 1.08003 * 120.12882 * 359.97056 * 10 9 7 30 30 H 1.07997 * 119.87833 * 180.29588 * 11 10 9 31 31 H 1.08999 * 109.47239 * 209.99822 * 13 12 11 32 32 H 1.09003 * 109.46763 * 329.99922 * 13 12 11 33 33 H 1.09005 * 109.39601 * 283.13544 * 15 14 13 34 34 H 1.09000 * 109.40155 * 42.86190 * 15 14 13 35 35 H 1.08999 * 109.59969 * 302.87580 * 16 15 14 36 36 H 1.08999 * 109.73442 * 182.47355 * 16 15 14 37 37 H 1.09003 * 109.60558 * 292.56031 * 20 17 16 38 38 H 1.09002 * 109.73639 * 172.15298 * 20 17 16 39 39 H 0.96699 * 116.99640 * 180.02562 * 25 23 21 40 40 H 1.08005 * 119.87745 * 179.97438 * 26 12 11 41 41 H 1.07995 * 120.12888 * 179.97438 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4897 2.0465 -1.4001 5 1 1.4397 2.6527 0.7001 6 1 3.5398 1.4402 0.7001 7 6 2.0080 -1.2119 0.0005 8 1 3.0678 -1.2234 0.2078 9 6 1.3273 -2.4214 -0.2704 10 6 1.7696 -3.6275 0.3038 11 6 1.0958 -4.7976 0.0381 12 6 -0.0113 -4.7919 -0.7963 13 6 -0.7404 -6.0799 -1.0801 14 7 -1.7991 -6.2738 -0.0803 15 6 -2.8301 -5.2404 -0.2003 16 6 -4.0999 -5.6831 0.5332 17 16 -3.7164 -5.8695 2.3006 18 8 -4.7828 -6.5694 2.9268 19 8 -3.3119 -4.6080 2.8146 20 6 -2.2651 -6.9621 2.2280 21 6 -1.2379 -6.3504 1.2704 22 1 -0.9783 -5.3483 1.6119 23 6 0.0007 -7.2087 1.2500 24 8 0.0448 -8.1890 0.5452 25 8 1.0549 -6.8840 2.0149 26 6 -0.4528 -3.6104 -1.3717 27 6 0.2056 -2.4285 -1.1201 28 1 -0.4850 0.8401 0.0004 29 1 2.6319 -3.6341 0.9541 30 1 1.4306 -5.7238 0.4815 31 1 -1.1839 -6.0349 -2.0748 32 1 -0.0388 -6.9127 -1.0324 33 1 -2.4642 -4.3115 0.2374 34 1 -3.0585 -5.0774 -1.2536 35 1 -4.4412 -6.6367 0.1304 36 1 -4.8796 -4.9321 0.4053 37 1 -2.5649 -7.9447 1.8636 38 1 -1.8269 -7.0586 3.2214 39 1 1.8268 -7.4645 1.9678 40 1 -1.3162 -3.6177 -2.0205 41 1 -0.1397 -1.5092 -1.5696 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571103180.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:13 Heat of formation + Delta-G solvation = -117.891957 kcal Electronic energy + Delta-G solvation = -28618.911376 eV Core-core repulsion = 24591.516436 eV Total energy + Delta-G solvation = -4027.394939 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.91135 -38.52827 -37.25373 -36.88236 -36.09219 -35.98910 -33.86988 -32.36266 -31.72932 -29.57815 -29.20635 -26.28893 -25.64742 -23.86049 -22.73367 -21.11602 -20.72178 -19.83539 -18.85184 -18.20019 -17.51192 -17.22030 -16.65824 -16.13956 -15.81269 -15.70076 -15.42509 -15.33533 -15.08140 -14.54691 -14.00650 -13.71133 -13.48343 -13.18604 -12.92991 -12.74243 -12.54025 -12.32066 -12.21135 -12.06664 -11.99621 -11.93018 -11.69648 -11.62172 -11.26830 -11.21544 -11.09151 -10.86893 -10.82670 -10.58440 -10.35923 -10.11262 -9.81213 -9.47296 -9.28598 -8.39189 -7.60340 -7.40919 -6.81786 -4.47390 -0.10213 2.10045 2.47681 2.59250 2.87935 2.94856 3.03714 3.06558 3.08538 3.52652 3.66734 3.88232 4.03525 4.29298 4.50031 4.58370 4.69844 4.94744 5.07785 5.13991 5.24655 5.49973 5.54150 5.59902 5.69864 5.78222 5.94788 6.12530 6.21759 6.24213 6.49173 6.75458 6.80074 6.86273 7.00819 7.14695 7.22806 7.48396 7.69208 7.90634 7.91912 7.94878 8.18373 8.52695 8.79426 8.84661 10.13779 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.013589 B = 0.004120 C = 0.003634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2059.946261 B = 6793.893830 C = 7703.585704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.075 3.925 3 Si 0.910 3.090 4 H -0.268 1.268 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.463 4.463 8 H 0.078 0.922 9 C 0.117 3.883 10 C -0.216 4.216 11 C -0.091 4.091 12 C -0.270 4.270 13 C 0.102 3.898 14 N -0.530 5.530 15 C 0.065 3.935 16 C -0.593 4.593 17 S 2.417 3.583 18 O -0.942 6.942 19 O -0.923 6.923 20 C -0.599 4.599 21 C 0.107 3.893 22 H 0.106 0.894 23 C 0.505 3.495 24 O -0.499 6.499 25 O -0.505 6.505 26 C -0.088 4.088 27 C -0.158 4.158 28 H 0.281 0.719 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.076 0.924 34 H 0.104 0.896 35 H 0.141 0.859 36 H 0.140 0.860 37 H 0.148 0.852 38 H 0.142 0.858 39 H 0.410 0.590 40 H 0.087 0.913 41 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.875 -10.299 1.035 11.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.143 4.143 3 Si 0.735 3.265 4 H -0.193 1.193 5 H -0.202 1.202 6 H -0.186 1.186 7 C -0.493 4.493 8 H 0.096 0.904 9 C 0.115 3.885 10 C -0.236 4.236 11 C -0.110 4.110 12 C -0.272 4.272 13 C -0.023 4.023 14 N -0.255 5.255 15 C -0.064 4.064 16 C -0.724 4.724 17 S 2.599 3.401 18 O -0.939 6.939 19 O -0.920 6.920 20 C -0.727 4.727 21 C -0.004 4.004 22 H 0.124 0.876 23 C 0.346 3.654 24 O -0.386 6.386 25 O -0.317 6.317 26 C -0.107 4.107 27 C -0.178 4.178 28 H 0.092 0.908 29 H 0.111 0.889 30 H 0.111 0.889 31 H 0.098 0.902 32 H 0.104 0.896 33 H 0.094 0.906 34 H 0.123 0.877 35 H 0.160 0.840 36 H 0.158 0.842 37 H 0.166 0.834 38 H 0.160 0.840 39 H 0.269 0.731 40 H 0.105 0.895 41 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -6.073 -10.247 1.549 12.012 hybrid contribution 1.592 0.809 -0.480 1.849 sum -4.481 -9.439 1.068 10.503 Atomic orbital electron populations 1.69785 1.07471 1.29333 1.35424 1.25896 0.94819 1.01270 0.92289 0.86273 0.80423 0.80540 0.79260 1.19325 1.20226 1.18633 1.19617 0.96533 0.90720 1.42406 0.90409 1.17675 0.91002 0.92086 0.87770 1.21006 1.03511 0.93404 1.05659 1.20729 0.95424 0.97132 0.97679 1.19649 1.02775 0.94676 1.10124 1.21162 0.91515 0.96034 0.93636 1.61783 1.14314 1.47532 1.01905 1.21795 0.87552 0.93689 1.03327 1.30220 1.07050 1.11947 1.23151 1.08095 0.76852 0.76391 0.78772 1.93591 1.51685 1.75119 1.73539 1.93667 1.82564 1.38904 1.76906 1.30377 1.17770 1.17337 1.07247 1.20685 0.88903 0.99497 0.91301 0.87611 1.22548 0.83784 0.83281 0.75792 1.90686 1.82046 1.27227 1.38627 1.84646 1.26310 1.57000 1.63697 1.20524 0.98268 0.92865 0.99077 1.21276 0.99236 0.96385 1.00874 0.90767 0.88903 0.88854 0.90201 0.89555 0.90579 0.87727 0.84040 0.84165 0.83421 0.83983 0.73097 0.89480 0.86704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.03 11.06 55.55 0.61 -19.41 16 2 C 0.08 1.83 5.20 -17.34 -0.09 1.74 16 3 Si 0.91 18.29 29.58 -169.99 -5.03 13.27 16 4 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 5 H -0.28 -5.48 7.11 56.52 0.40 -5.08 16 6 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 7 C -0.46 -11.87 9.05 -37.74 -0.34 -12.22 16 8 H 0.08 1.93 7.88 -52.49 -0.41 1.51 16 9 C 0.12 2.98 5.52 -106.82 -0.59 2.39 16 10 C -0.22 -5.01 9.80 -38.87 -0.38 -5.39 16 11 C -0.09 -1.86 8.03 -39.66 -0.32 -2.18 16 12 C -0.27 -5.22 4.21 -104.33 -0.44 -5.66 16 13 C 0.10 1.63 5.06 -4.97 -0.03 1.60 16 14 N -0.53 -7.44 4.38 -229.94 -1.01 -8.45 16 15 C 0.06 0.84 4.35 -3.97 -0.02 0.82 16 16 C -0.59 -5.87 6.58 37.25 0.24 -5.63 16 17 S 2.42 29.07 5.35 -107.50 -0.57 28.50 16 18 O -0.94 -13.28 18.11 -57.80 -1.05 -14.32 16 19 O -0.92 -15.06 18.10 -57.80 -1.05 -16.10 16 20 C -0.60 -6.63 5.84 37.25 0.22 -6.41 16 21 C 0.11 1.53 1.61 -69.00 -0.11 1.41 16 22 H 0.11 1.74 7.07 -51.93 -0.37 1.37 16 23 C 0.51 7.30 4.31 36.01 0.16 7.45 16 24 O -0.50 -7.94 15.69 -18.74 -0.29 -8.23 16 25 O -0.50 -6.37 11.36 -39.25 -0.45 -6.81 16 26 C -0.09 -1.84 8.38 -39.66 -0.33 -2.17 16 27 C -0.16 -3.84 8.65 -38.87 -0.34 -4.18 16 28 H 0.28 6.49 8.30 -40.82 -0.34 6.15 16 29 H 0.09 2.06 8.06 -52.48 -0.42 1.64 16 30 H 0.09 1.68 4.11 -52.49 -0.22 1.47 16 31 H 0.08 1.17 7.89 -51.93 -0.41 0.76 16 32 H 0.09 1.44 5.43 -51.93 -0.28 1.16 16 33 H 0.08 1.18 7.09 -51.93 -0.37 0.81 16 34 H 0.10 1.21 7.84 -51.93 -0.41 0.81 16 35 H 0.14 1.09 8.14 -51.93 -0.42 0.66 16 36 H 0.14 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.15 1.36 8.14 -51.93 -0.42 0.94 16 38 H 0.14 1.30 8.14 -51.93 -0.42 0.87 16 39 H 0.41 3.25 9.10 45.56 0.41 3.66 16 40 H 0.09 1.60 8.02 -52.48 -0.42 1.17 16 41 H 0.12 2.91 6.42 -52.49 -0.34 2.57 16 LS Contribution 341.29 15.07 5.14 5.14 Total: -1.00 -33.30 341.29 -10.10 -43.40 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: -4.05 Total: 11.45 kcal Atomic # 6 Polarization: -26.05 SS G_CDS: -2.36 Total: -28.42 kcal Atomic # 7 Polarization: -27.47 SS G_CDS: -0.39 Total: -27.86 kcal Atomic # 8 Polarization: -42.64 SS G_CDS: -2.83 Total: -45.47 kcal Atomic # 14 Polarization: 18.29 SS G_CDS: -5.03 Total: 13.27 kcal Atomic # 16 Polarization: 29.07 SS G_CDS: -0.57 Total: 28.50 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -33.30 -10.10 -43.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571103180.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.492 kcal (2) G-P(sol) polarization free energy of solvation -33.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds