Wall clock time and date at job start Tue Mar 31 2020 22:04:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86799 * 119.99796 * 2 1 4 4 H 1.48501 * 109.47341 * 270.00196 * 3 2 1 5 5 H 1.48500 * 109.47417 * 30.00234 * 3 2 1 6 6 H 1.48505 * 109.46881 * 150.00019 * 3 2 1 7 7 C 1.39942 * 120.00131 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00052 * 192.80068 * 7 2 1 9 9 C 1.41403 * 119.99761 * 12.80971 * 7 2 1 10 10 C 1.40712 * 120.24014 * 210.02149 * 9 7 2 11 11 C 1.37619 * 119.74504 * 179.69809 * 10 9 7 12 12 C 1.38635 * 120.24485 * 0.27673 * 11 10 9 13 13 C 1.50704 * 119.74941 * 179.97438 * 12 11 10 14 14 N 1.46900 * 109.47204 * 89.99628 * 13 12 11 15 15 C 1.46467 * 111.00119 * 65.39285 * 14 13 12 16 16 C 1.53182 * 109.90076 * 163.00024 * 15 14 13 17 17 S 1.81813 * 108.67730 * 62.63429 * 16 15 14 18 18 O 1.42097 * 108.69878 * 193.42810 * 17 16 15 19 19 O 1.42102 * 108.70178 * 61.94395 * 17 16 15 20 20 C 1.81811 * 101.02192 * 307.68291 * 17 16 15 21 21 C 1.46468 * 111.00023 * 299.53214 * 14 13 12 22 22 H 1.09004 * 109.39843 * 76.95647 * 21 14 13 23 23 C 1.50705 * 109.40236 * 317.13469 * 21 14 13 24 24 O 1.20820 * 119.99545 * 322.45663 * 23 21 14 25 25 O 1.34229 * 119.99961 * 142.46119 * 23 21 14 26 26 C 1.38637 * 120.50414 * 359.97438 * 12 11 10 27 27 C 1.37614 * 120.24788 * 0.02830 * 26 12 11 28 28 H 0.97003 * 119.99906 * 359.97438 * 1 2 3 29 29 H 1.08003 * 120.12882 * 359.97056 * 10 9 7 30 30 H 1.07997 * 119.87833 * 180.29588 * 11 10 9 31 31 H 1.08999 * 109.47239 * 209.99822 * 13 12 11 32 32 H 1.09003 * 109.46763 * 329.99922 * 13 12 11 33 33 H 1.09005 * 109.39601 * 283.13544 * 15 14 13 34 34 H 1.09000 * 109.40155 * 42.86190 * 15 14 13 35 35 H 1.08999 * 109.59969 * 302.87580 * 16 15 14 36 36 H 1.08999 * 109.73442 * 182.47355 * 16 15 14 37 37 H 1.09003 * 109.60558 * 292.56031 * 20 17 16 38 38 H 1.09002 * 109.73639 * 172.15298 * 20 17 16 39 39 H 0.96699 * 116.99640 * 180.02562 * 25 23 21 40 40 H 1.08005 * 119.87745 * 179.97438 * 26 12 11 41 41 H 1.07995 * 120.12888 * 179.97438 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4897 2.0465 -1.4001 5 1 1.4397 2.6527 0.7001 6 1 3.5398 1.4402 0.7001 7 6 2.0080 -1.2119 0.0005 8 1 3.0678 -1.2234 0.2078 9 6 1.3273 -2.4214 -0.2704 10 6 1.7696 -3.6275 0.3038 11 6 1.0958 -4.7976 0.0381 12 6 -0.0113 -4.7919 -0.7963 13 6 -0.7404 -6.0799 -1.0801 14 7 -1.7991 -6.2738 -0.0803 15 6 -2.8301 -5.2404 -0.2003 16 6 -4.0999 -5.6831 0.5332 17 16 -3.7164 -5.8695 2.3006 18 8 -4.7828 -6.5694 2.9268 19 8 -3.3119 -4.6080 2.8146 20 6 -2.2651 -6.9621 2.2280 21 6 -1.2379 -6.3504 1.2704 22 1 -0.9783 -5.3483 1.6119 23 6 0.0007 -7.2087 1.2500 24 8 0.0448 -8.1890 0.5452 25 8 1.0549 -6.8840 2.0149 26 6 -0.4528 -3.6104 -1.3717 27 6 0.2056 -2.4285 -1.1201 28 1 -0.4850 0.8401 0.0004 29 1 2.6319 -3.6341 0.9541 30 1 1.4306 -5.7238 0.4815 31 1 -1.1839 -6.0349 -2.0748 32 1 -0.0388 -6.9127 -1.0324 33 1 -2.4642 -4.3115 0.2374 34 1 -3.0585 -5.0774 -1.2536 35 1 -4.4412 -6.6367 0.1304 36 1 -4.8796 -4.9321 0.4053 37 1 -2.5649 -7.9447 1.8636 38 1 -1.8269 -7.0586 3.2214 39 1 1.8268 -7.4645 1.9678 40 1 -1.3162 -3.6177 -2.0205 41 1 -0.1397 -1.5092 -1.5696 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571103180.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:13 Heat of formation + Delta-G solvation = -143.760222 kcal Electronic energy + Delta-G solvation = -28620.033108 eV Core-core repulsion = 24591.516436 eV Total energy + Delta-G solvation = -4028.516671 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.07513 -39.86629 -38.65225 -38.03793 -37.16915 -37.11115 -35.58958 -33.44579 -33.04281 -31.27247 -30.75115 -27.81427 -26.71444 -25.30613 -23.88429 -22.80830 -22.19623 -21.15099 -19.89159 -19.29647 -19.27055 -18.32899 -17.75552 -17.21569 -17.14346 -16.85117 -16.70199 -16.56912 -16.30257 -16.00636 -15.48342 -15.33039 -14.63388 -14.38837 -14.23675 -13.94311 -13.83660 -13.65638 -13.40838 -13.35022 -13.22857 -13.13124 -13.05279 -12.92451 -12.84561 -12.63050 -12.40625 -12.26588 -12.21973 -12.01513 -11.58181 -11.47302 -11.23412 -11.12242 -11.06949 -9.65667 -9.36203 -9.18311 -8.61908 -6.37270 -1.04783 0.89438 0.97991 1.13311 1.37203 1.47155 1.49785 1.54240 1.90164 2.20395 2.52474 2.59929 2.78016 3.00565 3.31287 3.60333 3.72969 3.83459 3.94426 4.11919 4.18408 4.19024 4.31038 4.37593 4.50432 4.61167 4.62942 4.78432 4.90098 4.97779 5.04057 5.15572 5.30997 5.42009 5.48070 5.60901 5.65786 5.74130 5.93813 6.09646 6.18126 6.39432 6.69601 6.91165 6.94230 7.01685 8.35746 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.013589 B = 0.004120 C = 0.003634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2059.946261 B = 6793.893830 C = 7703.585704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.830 5.830 2 C 0.035 3.965 3 Si 0.980 3.020 4 H -0.261 1.261 5 H -0.270 1.270 6 H -0.261 1.261 7 C -0.504 4.504 8 H 0.071 0.929 9 C 0.083 3.917 10 C -0.235 4.235 11 C -0.092 4.092 12 C -0.249 4.249 13 C 0.104 3.896 14 N -0.515 5.515 15 C 0.056 3.944 16 C -0.573 4.573 17 S 2.423 3.577 18 O -0.964 6.964 19 O -0.976 6.976 20 C -0.590 4.590 21 C 0.096 3.904 22 H 0.079 0.921 23 C 0.507 3.493 24 O -0.512 6.512 25 O -0.509 6.509 26 C -0.086 4.086 27 C -0.182 4.182 28 H 0.286 0.714 29 H 0.092 0.908 30 H 0.119 0.881 31 H 0.103 0.897 32 H 0.086 0.914 33 H 0.045 0.955 34 H 0.126 0.874 35 H 0.177 0.823 36 H 0.164 0.836 37 H 0.174 0.826 38 H 0.159 0.841 39 H 0.430 0.570 40 H 0.116 0.884 41 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.928 -12.252 0.176 13.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C -0.179 4.179 3 Si 0.801 3.199 4 H -0.186 1.186 5 H -0.194 1.194 6 H -0.185 1.185 7 C -0.535 4.535 8 H 0.090 0.910 9 C 0.081 3.919 10 C -0.254 4.254 11 C -0.111 4.111 12 C -0.251 4.251 13 C -0.022 4.022 14 N -0.240 5.240 15 C -0.072 4.072 16 C -0.705 4.705 17 S 2.609 3.391 18 O -0.961 6.961 19 O -0.973 6.973 20 C -0.719 4.719 21 C -0.015 4.015 22 H 0.097 0.903 23 C 0.348 3.652 24 O -0.400 6.400 25 O -0.323 6.323 26 C -0.104 4.104 27 C -0.202 4.202 28 H 0.097 0.903 29 H 0.110 0.890 30 H 0.137 0.863 31 H 0.121 0.879 32 H 0.104 0.896 33 H 0.063 0.937 34 H 0.144 0.856 35 H 0.194 0.806 36 H 0.182 0.818 37 H 0.192 0.808 38 H 0.177 0.823 39 H 0.293 0.707 40 H 0.134 0.866 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -7.120 -12.215 0.729 14.158 hybrid contribution 1.893 1.193 -0.232 2.250 sum -5.227 -11.022 0.496 12.209 Atomic orbital electron populations 1.69847 1.08754 1.30342 1.36732 1.26670 0.95562 1.04237 0.91422 0.85231 0.78969 0.76206 0.79466 1.18597 1.19426 1.18459 1.19824 0.96551 0.92116 1.44962 0.91047 1.18004 0.92094 0.92944 0.88865 1.21177 1.04134 0.93983 1.06117 1.21061 0.95342 0.97213 0.97459 1.20113 1.01592 0.95952 1.07446 1.21196 0.92009 0.93523 0.95433 1.61848 1.13460 1.47373 1.01328 1.21940 0.88278 0.92220 1.04806 1.30097 1.06202 1.14644 1.19582 1.07692 0.76479 0.75219 0.79740 1.93561 1.52451 1.75156 1.74975 1.93609 1.83323 1.41539 1.78876 1.30324 1.16120 1.17825 1.07663 1.20795 0.90199 0.98564 0.91928 0.90321 1.22518 0.84030 0.82977 0.75652 1.90686 1.82349 1.27722 1.39256 1.84607 1.26924 1.57682 1.63086 1.20817 0.98518 0.92150 0.98960 1.21249 1.00065 0.97052 1.01835 0.90306 0.88998 0.86308 0.87859 0.89573 0.93661 0.85568 0.80558 0.81798 0.80791 0.82287 0.70716 0.86577 0.88647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.62 11.06 21.83 0.24 -43.38 16 2 C 0.04 1.78 5.20 85.26 0.44 2.23 16 3 Si 0.98 38.63 29.58 68.60 2.03 40.66 16 4 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 5 H -0.27 -10.18 7.11 99.48 0.71 -9.47 16 6 H -0.26 -10.06 7.11 99.48 0.71 -9.36 16 7 C -0.50 -27.24 9.05 23.46 0.21 -27.03 16 8 H 0.07 3.75 7.88 -2.91 -0.02 3.73 16 9 C 0.08 4.41 5.52 -21.29 -0.12 4.29 16 10 C -0.23 -11.20 9.80 22.73 0.22 -10.98 16 11 C -0.09 -3.73 8.03 22.22 0.18 -3.55 16 12 C -0.25 -9.26 4.21 -19.67 -0.08 -9.34 16 13 C 0.10 3.00 5.06 85.56 0.43 3.44 16 14 N -0.52 -12.85 4.38 -881.41 -3.86 -16.71 16 15 C 0.06 1.28 4.35 86.45 0.38 1.66 16 16 C -0.57 -9.32 6.58 72.04 0.47 -8.84 16 17 S 2.42 54.49 5.35 -56.49 -0.30 54.19 16 18 O -0.96 -25.52 18.11 -127.41 -2.31 -27.82 16 19 O -0.98 -32.23 18.10 -127.41 -2.31 -34.53 16 20 C -0.59 -11.59 5.84 72.04 0.42 -11.17 16 21 C 0.10 2.55 1.61 44.31 0.07 2.62 16 22 H 0.08 2.56 7.07 -2.38 -0.02 2.54 16 23 C 0.51 13.42 4.31 71.24 0.31 13.73 16 24 O -0.51 -14.72 15.69 21.98 0.34 -14.38 16 25 O -0.51 -11.85 11.36 -51.40 -0.58 -12.43 16 26 C -0.09 -3.52 8.38 22.22 0.19 -3.34 16 27 C -0.18 -9.15 8.65 22.73 0.20 -8.96 16 28 H 0.29 13.69 8.30 -92.71 -0.77 12.92 16 29 H 0.09 4.25 8.06 -2.91 -0.02 4.23 16 30 H 0.12 4.11 4.11 -2.91 -0.01 4.10 16 31 H 0.10 2.55 7.89 -2.39 -0.02 2.54 16 32 H 0.09 2.58 5.43 -2.39 -0.01 2.56 16 33 H 0.05 1.36 7.09 -2.38 -0.02 1.34 16 34 H 0.13 2.39 7.84 -2.39 -0.02 2.37 16 35 H 0.18 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.16 2.01 8.14 -2.39 -0.02 1.99 16 37 H 0.17 2.53 8.14 -2.39 -0.02 2.51 16 38 H 0.16 2.57 8.14 -2.39 -0.02 2.55 16 39 H 0.43 5.83 9.10 -74.06 -0.67 5.15 16 40 H 0.12 4.02 8.02 -2.91 -0.02 3.99 16 41 H 0.10 5.08 6.42 -2.91 -0.02 5.06 16 Total: -1.00 -75.36 341.29 -3.00 -78.37 By element: Atomic # 1 Polarization: 30.89 SS G_CDS: 0.42 Total: 31.30 kcal Atomic # 6 Polarization: -58.58 SS G_CDS: 3.32 Total: -55.26 kcal Atomic # 7 Polarization: -56.47 SS G_CDS: -3.62 Total: -60.09 kcal Atomic # 8 Polarization: -84.32 SS G_CDS: -4.85 Total: -89.17 kcal Atomic # 14 Polarization: 38.63 SS G_CDS: 2.03 Total: 40.66 kcal Atomic # 16 Polarization: 54.49 SS G_CDS: -0.30 Total: 54.19 kcal Total: -75.36 -3.00 -78.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571103180.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.392 kcal (2) G-P(sol) polarization free energy of solvation -75.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds