Wall clock time and date at job start Tue Mar 31 2020 22:03:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30822 * 1 3 3 Si 1.86792 * 120.00442 * 2 1 4 4 H 1.48506 * 109.47137 * 240.00242 * 3 2 1 5 5 H 1.48503 * 109.47162 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47383 * 120.00060 * 3 2 1 7 7 C 1.39952 * 120.00020 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00532 * 189.56065 * 7 2 1 9 9 C 1.41400 * 119.99799 * 9.56536 * 7 2 1 10 10 C 1.40733 * 120.24231 * 27.63531 * 9 7 2 11 11 C 1.37602 * 119.74490 * 180.02562 * 10 9 7 12 12 C 1.38662 * 120.24534 * 0.02562 * 11 10 9 13 13 C 1.38614 * 120.50355 * 359.71830 * 12 11 10 14 14 C 1.37637 * 120.24362 * 0.56295 * 13 12 11 15 15 S 1.76205 * 120.12622 * 179.71917 * 14 13 12 16 16 O 1.42102 * 106.40119 * 134.75179 * 15 14 13 17 17 O 1.42100 * 106.40066 * 1.83680 * 15 14 13 18 18 N 1.65590 * 107.21989 * 248.29558 * 15 14 13 19 19 C 1.46505 * 120.00060 * 64.72952 * 18 15 14 20 20 H 1.08998 * 110.01547 * 331.85080 * 19 18 15 21 21 C 1.53869 * 110.02794 * 93.24075 * 19 18 15 22 22 C 1.54267 * 106.64085 * 119.26185 * 21 19 18 23 23 C 1.54957 * 104.16059 * 336.44310 * 22 21 19 24 24 C 1.54264 * 110.03257 * 210.40631 * 19 18 15 25 25 H 1.08996 * 110.48491 * 145.51648 * 24 19 18 26 26 C 1.50702 * 110.48654 * 23.00195 * 24 19 18 27 27 O 1.20821 * 120.00070 * 0.02562 * 26 24 19 28 28 O 1.34234 * 119.99987 * 179.97438 * 26 24 19 29 29 H 0.96997 * 119.99552 * 0.02562 * 1 2 3 30 30 H 1.08001 * 120.13213 * 0.02562 * 10 9 7 31 31 H 1.08001 * 119.87787 * 179.97438 * 11 10 9 32 32 H 1.08000 * 119.74781 * 180.02562 * 12 11 10 33 33 H 1.07996 * 119.88070 * 180.30239 * 13 12 11 34 34 H 0.97007 * 120.00050 * 244.73128 * 18 15 14 35 35 H 1.09009 * 110.03239 * 238.57017 * 21 19 18 36 36 H 1.08995 * 110.04189 * 359.95106 * 21 19 18 37 37 H 1.09004 * 110.48936 * 95.08970 * 22 21 19 38 38 H 1.09000 * 110.48770 * 217.73205 * 22 21 19 39 39 H 1.09001 * 110.71787 * 279.57618 * 23 22 21 40 40 H 1.08996 * 110.92617 * 156.29322 * 23 22 21 41 41 H 0.96691 * 117.00135 * 180.02562 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6176 0.0000 4 1 3.0960 1.6962 -1.2126 5 1 1.2774 2.7464 -0.0006 6 1 3.0961 1.6962 1.2124 7 6 2.0080 -1.2120 0.0005 8 1 3.0767 -1.2185 0.1559 9 6 1.3157 -2.4281 -0.2024 10 6 0.1235 -2.4489 -0.9500 11 6 -0.5421 -3.6380 -1.1407 12 6 -0.0427 -4.8127 -0.5990 13 6 1.1334 -4.8049 0.1345 14 6 1.8128 -3.6261 0.3428 15 16 3.3036 -3.6187 1.2820 16 8 4.2298 -2.8202 0.5583 17 8 3.5575 -4.9696 1.6425 18 7 2.9905 -2.8094 2.6923 19 6 2.0318 -3.3583 3.6546 20 1 1.2866 -3.9615 3.1361 21 6 2.7669 -4.2138 4.7012 22 6 2.5004 -3.5596 6.0727 23 6 2.1675 -2.0852 5.7311 24 6 1.3431 -2.2137 4.4261 25 1 0.3084 -2.4731 4.6501 26 6 1.4049 -0.9325 3.6350 27 8 1.9440 -0.9155 2.5538 28 8 0.8601 0.1896 4.1310 29 1 -0.4849 0.8401 -0.0004 30 1 -0.2675 -1.5350 -1.3724 31 1 -1.4574 -3.6563 -1.7137 32 1 -0.5715 -5.7415 -0.7540 33 1 1.5159 -5.7265 0.5477 34 1 3.4417 -1.9717 2.8814 35 1 2.3778 -5.2320 4.6913 36 1 3.8368 -4.2213 4.4928 37 1 1.6535 -4.0375 6.5652 38 1 3.3893 -3.6151 6.7011 39 1 3.0796 -1.5143 5.5572 40 1 1.5717 -1.6276 6.5208 41 1 0.9243 0.9864 3.5870 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574242036.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:26 Heat of formation + Delta-G solvation = -128.837741 kcal Electronic energy + Delta-G solvation = -29827.824488 eV Core-core repulsion = 25799.954904 eV Total energy + Delta-G solvation = -4027.869584 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.21003 -37.72572 -37.44619 -36.10425 -35.48663 -34.73004 -33.75519 -32.62516 -30.06960 -29.45318 -29.40644 -27.08420 -25.36974 -22.75513 -21.53168 -20.99684 -20.67319 -19.71649 -18.77166 -17.59616 -17.52294 -16.83162 -16.35393 -15.76481 -15.35678 -15.13020 -15.05991 -14.81254 -14.26191 -14.02117 -13.87968 -13.18169 -13.08673 -12.94639 -12.67316 -12.33743 -11.88790 -11.82046 -11.67939 -11.39631 -11.20063 -11.16859 -11.13788 -11.05158 -11.02205 -10.97848 -10.77216 -10.57061 -10.49561 -10.46691 -10.25445 -9.80849 -9.73781 -9.28682 -9.03508 -8.41189 -7.90933 -7.45675 -6.89058 -4.55455 1.73895 2.46211 2.80364 2.84656 2.97500 3.06726 3.20655 3.44179 3.87624 4.10162 4.45194 4.54268 4.60928 4.92502 4.98640 5.39893 5.40818 5.45904 5.51694 5.54434 5.66542 5.78148 5.82909 5.87548 5.98228 6.04913 6.13531 6.20731 6.33993 6.40100 6.50363 6.68272 6.93255 7.06325 7.13210 7.23773 7.48602 7.63391 7.82589 7.91283 7.94243 8.11404 8.50538 8.56165 8.71226 8.81389 10.01849 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.009925 B = 0.007917 C = 0.005739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2820.382809 B = 3535.969989 C = 4877.918750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.094 3.906 3 Si 0.910 3.090 4 H -0.263 1.263 5 H -0.281 1.281 6 H -0.258 1.258 7 C -0.421 4.421 8 H 0.113 0.887 9 C 0.186 3.814 10 C -0.160 4.160 11 C -0.082 4.082 12 C -0.257 4.257 13 C -0.005 4.005 14 C -0.779 4.779 15 S 2.705 3.295 16 O -0.979 6.979 17 O -1.004 7.004 18 N -1.092 6.092 19 C 0.175 3.825 20 H 0.092 0.908 21 C -0.140 4.140 22 C -0.122 4.122 23 C -0.110 4.110 24 C -0.087 4.087 25 H 0.113 0.887 26 C 0.454 3.546 27 O -0.433 6.433 28 O -0.530 6.530 29 H 0.280 0.720 30 H 0.126 0.874 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.104 0.896 34 H 0.416 0.584 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.071 0.929 40 H 0.076 0.924 41 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.067 0.409 11.318 11.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C -0.126 4.126 3 Si 0.734 3.266 4 H -0.187 1.187 5 H -0.206 1.206 6 H -0.183 1.183 7 C -0.449 4.449 8 H 0.130 0.870 9 C 0.181 3.819 10 C -0.179 4.179 11 C -0.101 4.101 12 C -0.278 4.278 13 C -0.025 4.025 14 C -0.875 4.875 15 S 2.803 3.197 16 O -0.970 6.970 17 O -0.994 6.994 18 N -0.852 5.852 19 C 0.065 3.935 20 H 0.110 0.890 21 C -0.179 4.179 22 C -0.160 4.160 23 C -0.148 4.148 24 C -0.108 4.108 25 H 0.131 0.869 26 C 0.292 3.708 27 O -0.314 6.314 28 O -0.343 6.343 29 H 0.091 0.909 30 H 0.144 0.856 31 H 0.107 0.893 32 H 0.109 0.891 33 H 0.122 0.878 34 H 0.254 0.746 35 H 0.094 0.906 36 H 0.097 0.903 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.090 0.910 40 H 0.095 0.905 41 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges 0.646 -0.304 10.995 11.018 hybrid contribution -0.637 1.808 -0.526 1.988 sum 0.009 1.504 10.469 10.576 Atomic orbital electron populations 1.69826 1.07722 1.29356 1.34191 1.25879 0.94466 1.01472 0.90763 0.86338 0.80135 0.79356 0.80769 1.18714 1.20641 1.18270 1.20366 0.97768 0.89861 1.36910 0.86975 1.17001 0.90065 0.89932 0.84885 1.21633 0.98054 0.96710 1.01528 1.20866 0.97653 0.93650 0.97900 1.20422 1.00119 0.96846 1.10387 1.20224 0.93118 0.95039 0.94078 1.29699 1.28002 1.00799 1.28979 1.00816 0.74554 0.71816 0.72502 1.93463 1.62624 1.69806 1.71074 1.93439 1.85586 1.36429 1.83946 1.55643 1.55625 1.38528 1.35376 1.21014 0.90439 0.92232 0.89791 0.89011 1.22762 1.02066 0.99385 0.93699 1.22366 1.01577 0.94768 0.97273 1.22474 0.99579 0.97614 0.95152 1.22009 1.02664 0.90445 0.95655 0.86903 1.23201 0.77283 0.84840 0.85446 1.91016 1.37604 1.84245 1.18559 1.84449 1.75286 1.20923 1.53650 0.90863 0.85589 0.89266 0.89142 0.87779 0.74551 0.90562 0.90316 0.91224 0.91267 0.91002 0.90499 0.73969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -18.42 10.70 55.55 0.59 -17.83 16 2 C 0.09 2.19 4.11 -17.34 -0.07 2.12 16 3 Si 0.91 18.18 29.55 -169.99 -5.02 13.16 16 4 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 5 H -0.28 -5.33 7.11 56.52 0.40 -4.93 16 6 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 7 C -0.42 -10.66 5.67 -37.74 -0.21 -10.87 16 8 H 0.11 2.95 5.21 -52.49 -0.27 2.68 16 9 C 0.19 4.80 5.57 -106.82 -0.59 4.21 16 10 C -0.16 -4.03 8.67 -38.87 -0.34 -4.37 16 11 C -0.08 -1.89 10.02 -39.66 -0.40 -2.29 16 12 C -0.26 -5.78 10.05 -39.29 -0.39 -6.18 16 13 C 0.00 -0.11 9.53 -39.66 -0.38 -0.49 16 14 C -0.78 -18.89 5.79 -38.87 -0.23 -19.12 16 15 S 2.71 60.13 5.10 -107.50 -0.55 59.58 16 16 O -0.98 -24.50 15.41 -57.17 -0.88 -25.39 16 17 O -1.00 -22.79 16.73 -57.17 -0.96 -23.74 16 18 N -1.09 -19.83 3.45 -3.94 -0.01 -19.84 16 19 C 0.17 2.66 3.24 -66.81 -0.22 2.44 16 20 H 0.09 1.49 7.89 -51.93 -0.41 1.08 16 21 C -0.14 -1.77 6.59 -25.62 -0.17 -1.94 16 22 C -0.12 -1.18 6.84 -25.03 -0.17 -1.35 16 23 C -0.11 -1.15 6.32 -24.70 -0.16 -1.30 16 24 C -0.09 -1.15 3.33 -90.11 -0.30 -1.45 16 25 H 0.11 1.34 8.14 -51.93 -0.42 0.92 16 26 C 0.45 7.18 7.33 36.01 0.26 7.44 16 27 O -0.43 -8.32 9.34 -18.75 -0.18 -8.50 16 28 O -0.53 -7.33 13.42 -39.27 -0.53 -7.86 16 29 H 0.28 6.02 8.30 -40.82 -0.34 5.69 16 30 H 0.13 3.23 6.09 -52.49 -0.32 2.91 16 31 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 32 H 0.09 1.79 8.06 -52.49 -0.42 1.36 16 33 H 0.10 2.22 7.33 -52.49 -0.38 1.84 16 34 H 0.42 7.29 6.68 -34.46 -0.23 7.06 16 35 H 0.08 0.92 8.14 -51.92 -0.42 0.50 16 36 H 0.08 1.06 7.92 -51.93 -0.41 0.65 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.07 0.77 8.05 -51.93 -0.42 0.35 16 40 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.40 4.70 9.10 45.56 0.41 5.12 16 LS Contribution 341.48 15.07 5.15 5.15 Total: -1.00 -31.00 341.48 -9.87 -40.87 By element: Atomic # 1 Polarization: 21.66 SS G_CDS: -4.13 Total: 17.53 kcal Atomic # 6 Polarization: -29.77 SS G_CDS: -3.36 Total: -33.13 kcal Atomic # 7 Polarization: -38.26 SS G_CDS: 0.58 Total: -37.67 kcal Atomic # 8 Polarization: -62.94 SS G_CDS: -2.54 Total: -65.48 kcal Atomic # 14 Polarization: 18.18 SS G_CDS: -5.02 Total: 13.16 kcal Atomic # 16 Polarization: 60.13 SS G_CDS: -0.55 Total: 59.58 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.00 -9.87 -40.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574242036.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.968 kcal (2) G-P(sol) polarization free energy of solvation -30.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds