Wall clock time and date at job start Tue Mar 31 2020 22:03:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30822 * 1 3 3 Si 1.86792 * 120.00442 * 2 1 4 4 H 1.48506 * 109.47137 * 240.00242 * 3 2 1 5 5 H 1.48503 * 109.47162 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47383 * 120.00060 * 3 2 1 7 7 C 1.39952 * 120.00020 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00532 * 189.56065 * 7 2 1 9 9 C 1.41400 * 119.99799 * 9.56536 * 7 2 1 10 10 C 1.40733 * 120.24231 * 27.63531 * 9 7 2 11 11 C 1.37602 * 119.74490 * 180.02562 * 10 9 7 12 12 C 1.38662 * 120.24534 * 0.02562 * 11 10 9 13 13 C 1.38614 * 120.50355 * 359.71830 * 12 11 10 14 14 C 1.37637 * 120.24362 * 0.56295 * 13 12 11 15 15 S 1.76205 * 120.12622 * 179.71917 * 14 13 12 16 16 O 1.42102 * 106.40119 * 134.75179 * 15 14 13 17 17 O 1.42100 * 106.40066 * 1.83680 * 15 14 13 18 18 N 1.65590 * 107.21989 * 248.29558 * 15 14 13 19 19 C 1.46505 * 120.00060 * 64.72952 * 18 15 14 20 20 H 1.08998 * 110.01547 * 331.85080 * 19 18 15 21 21 C 1.53869 * 110.02794 * 93.24075 * 19 18 15 22 22 C 1.54267 * 106.64085 * 119.26185 * 21 19 18 23 23 C 1.54957 * 104.16059 * 336.44310 * 22 21 19 24 24 C 1.54264 * 110.03257 * 210.40631 * 19 18 15 25 25 H 1.08996 * 110.48491 * 145.51648 * 24 19 18 26 26 C 1.50702 * 110.48654 * 23.00195 * 24 19 18 27 27 O 1.20821 * 120.00070 * 0.02562 * 26 24 19 28 28 O 1.34234 * 119.99987 * 179.97438 * 26 24 19 29 29 H 0.96997 * 119.99552 * 0.02562 * 1 2 3 30 30 H 1.08001 * 120.13213 * 0.02562 * 10 9 7 31 31 H 1.08001 * 119.87787 * 179.97438 * 11 10 9 32 32 H 1.08000 * 119.74781 * 180.02562 * 12 11 10 33 33 H 1.07996 * 119.88070 * 180.30239 * 13 12 11 34 34 H 0.97007 * 120.00050 * 244.73128 * 18 15 14 35 35 H 1.09009 * 110.03239 * 238.57017 * 21 19 18 36 36 H 1.08995 * 110.04189 * 359.95106 * 21 19 18 37 37 H 1.09004 * 110.48936 * 95.08970 * 22 21 19 38 38 H 1.09000 * 110.48770 * 217.73205 * 22 21 19 39 39 H 1.09001 * 110.71787 * 279.57618 * 23 22 21 40 40 H 1.08996 * 110.92617 * 156.29322 * 23 22 21 41 41 H 0.96691 * 117.00135 * 180.02562 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6176 0.0000 4 1 3.0960 1.6962 -1.2126 5 1 1.2774 2.7464 -0.0006 6 1 3.0961 1.6962 1.2124 7 6 2.0080 -1.2120 0.0005 8 1 3.0767 -1.2185 0.1559 9 6 1.3157 -2.4281 -0.2024 10 6 0.1235 -2.4489 -0.9500 11 6 -0.5421 -3.6380 -1.1407 12 6 -0.0427 -4.8127 -0.5990 13 6 1.1334 -4.8049 0.1345 14 6 1.8128 -3.6261 0.3428 15 16 3.3036 -3.6187 1.2820 16 8 4.2298 -2.8202 0.5583 17 8 3.5575 -4.9696 1.6425 18 7 2.9905 -2.8094 2.6923 19 6 2.0318 -3.3583 3.6546 20 1 1.2866 -3.9615 3.1361 21 6 2.7669 -4.2138 4.7012 22 6 2.5004 -3.5596 6.0727 23 6 2.1675 -2.0852 5.7311 24 6 1.3431 -2.2137 4.4261 25 1 0.3084 -2.4731 4.6501 26 6 1.4049 -0.9325 3.6350 27 8 1.9440 -0.9155 2.5538 28 8 0.8601 0.1896 4.1310 29 1 -0.4849 0.8401 -0.0004 30 1 -0.2675 -1.5350 -1.3724 31 1 -1.4574 -3.6563 -1.7137 32 1 -0.5715 -5.7415 -0.7540 33 1 1.5159 -5.7265 0.5477 34 1 3.4417 -1.9717 2.8814 35 1 2.3778 -5.2320 4.6913 36 1 3.8368 -4.2213 4.4928 37 1 1.6535 -4.0375 6.5652 38 1 3.3893 -3.6151 6.7011 39 1 3.0796 -1.5143 5.5572 40 1 1.5717 -1.6276 6.5208 41 1 0.9243 0.9864 3.5870 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001574242036.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:25 Heat of formation + Delta-G solvation = -150.000152 kcal Electronic energy + Delta-G solvation = -29828.742159 eV Core-core repulsion = 25799.954904 eV Total energy + Delta-G solvation = -4028.787255 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.39875 -39.26622 -38.84755 -37.90944 -36.70734 -36.57774 -35.55273 -33.90756 -31.89042 -31.24943 -30.45115 -28.17912 -27.19945 -23.89774 -23.34256 -22.81233 -21.56965 -20.89960 -20.35800 -19.41584 -18.88893 -18.32958 -17.76436 -17.33636 -17.07854 -16.51156 -16.35294 -16.01731 -15.97786 -15.49002 -15.00338 -14.88588 -14.84538 -14.41516 -14.05040 -13.63019 -13.60531 -13.15375 -13.12886 -12.91737 -12.91079 -12.82829 -12.80003 -12.71733 -12.29457 -12.19216 -12.11082 -11.97551 -11.91756 -11.70283 -11.59388 -11.40621 -11.05901 -11.02414 -10.79449 -9.84928 -9.73072 -9.31219 -8.65514 -6.41277 0.01849 0.63157 1.05246 1.36040 1.45178 1.52591 1.62594 2.22594 2.32050 2.53042 2.74464 3.10035 3.43823 3.63556 3.71831 3.94396 4.10002 4.32930 4.38357 4.46101 4.51701 4.54008 4.55914 4.69882 4.78832 4.80467 4.86797 5.09593 5.12866 5.26904 5.30130 5.30253 5.39452 5.45007 5.56531 5.65470 5.80103 5.91679 5.99081 6.09366 6.27332 6.47581 6.67518 6.87666 6.95976 7.33496 8.27486 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.009925 B = 0.007917 C = 0.005739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2820.382809 B = 3535.969989 C = 4877.918750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.071 3.929 3 Si 0.959 3.041 4 H -0.276 1.276 5 H -0.260 1.260 6 H -0.253 1.253 7 C -0.438 4.438 8 H 0.095 0.905 9 C 0.162 3.838 10 C -0.189 4.189 11 C -0.081 4.081 12 C -0.261 4.261 13 C -0.015 4.015 14 C -0.797 4.797 15 S 2.721 3.279 16 O -1.013 7.013 17 O -1.012 7.012 18 N -1.080 6.080 19 C 0.162 3.838 20 H 0.076 0.924 21 C -0.140 4.140 22 C -0.110 4.110 23 C -0.102 4.102 24 C -0.085 4.085 25 H 0.130 0.870 26 C 0.451 3.549 27 O -0.473 6.473 28 O -0.523 6.523 29 H 0.289 0.711 30 H 0.115 0.885 31 H 0.115 0.885 32 H 0.121 0.879 33 H 0.118 0.882 34 H 0.419 0.581 35 H 0.081 0.919 36 H 0.067 0.933 37 H 0.090 0.910 38 H 0.086 0.914 39 H 0.067 0.933 40 H 0.099 0.901 41 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.863 0.568 13.444 13.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C -0.147 4.147 3 Si 0.781 3.219 4 H -0.202 1.202 5 H -0.184 1.184 6 H -0.177 1.177 7 C -0.465 4.465 8 H 0.113 0.887 9 C 0.157 3.843 10 C -0.209 4.209 11 C -0.100 4.100 12 C -0.281 4.281 13 C -0.035 4.035 14 C -0.891 4.891 15 S 2.817 3.183 16 O -1.004 7.004 17 O -1.002 7.002 18 N -0.843 5.843 19 C 0.054 3.946 20 H 0.094 0.906 21 C -0.179 4.179 22 C -0.148 4.148 23 C -0.140 4.140 24 C -0.105 4.105 25 H 0.148 0.852 26 C 0.292 3.708 27 O -0.357 6.357 28 O -0.336 6.336 29 H 0.100 0.900 30 H 0.133 0.867 31 H 0.133 0.867 32 H 0.139 0.861 33 H 0.136 0.864 34 H 0.259 0.741 35 H 0.099 0.901 36 H 0.086 0.914 37 H 0.109 0.891 38 H 0.104 0.896 39 H 0.086 0.914 40 H 0.118 0.882 41 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges -0.187 -0.146 13.134 13.136 hybrid contribution -0.444 1.720 -1.164 2.124 sum -0.631 1.574 11.970 12.089 Atomic orbital electron populations 1.69836 1.08476 1.30495 1.33676 1.26369 0.95040 1.03330 0.89977 0.85606 0.79347 0.76762 0.80188 1.20153 1.18354 1.17650 1.20286 0.97017 0.90877 1.38340 0.88731 1.17266 0.90727 0.90724 0.85556 1.21655 0.98966 0.97284 1.02963 1.21177 0.98206 0.93149 0.97454 1.20785 0.99973 0.97879 1.09476 1.20527 0.93525 0.95266 0.94176 1.30022 1.28614 1.00902 1.29567 1.00213 0.73673 0.71563 0.72826 1.93407 1.63778 1.70507 1.72668 1.93415 1.85574 1.37061 1.84155 1.55292 1.56243 1.38459 1.34286 1.21330 0.90065 0.93378 0.89849 0.90626 1.22747 1.00960 0.99475 0.94757 1.22350 1.03230 0.93722 0.95491 1.22495 0.99200 0.98373 0.93927 1.22106 1.03897 0.88269 0.96252 0.85230 1.23741 0.76205 0.85794 0.85089 1.91014 1.39487 1.84898 1.20299 1.84430 1.74651 1.21007 1.53526 0.89982 0.86687 0.86654 0.86070 0.86379 0.74117 0.90064 0.91404 0.89140 0.89576 0.91398 0.88227 0.72960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -37.69 10.70 21.83 0.23 -37.45 16 2 C 0.07 3.37 4.11 85.26 0.35 3.72 16 3 Si 0.96 37.21 29.55 68.60 2.03 39.24 16 4 H -0.28 -11.27 7.11 99.48 0.71 -10.56 16 5 H -0.26 -9.07 7.11 99.48 0.71 -8.37 16 6 H -0.25 -9.48 7.11 99.48 0.71 -8.77 16 7 C -0.44 -22.78 5.67 23.46 0.13 -22.65 16 8 H 0.09 5.19 5.21 -2.91 -0.02 5.17 16 9 C 0.16 8.58 5.57 -21.29 -0.12 8.46 16 10 C -0.19 -9.71 8.67 22.73 0.20 -9.51 16 11 C -0.08 -3.71 10.02 22.22 0.22 -3.49 16 12 C -0.26 -11.44 10.05 22.46 0.23 -11.22 16 13 C -0.02 -0.70 9.53 22.22 0.21 -0.49 16 14 C -0.80 -39.43 5.79 22.73 0.13 -39.30 16 15 S 2.72 123.84 5.10 -56.49 -0.29 123.56 16 16 O -1.01 -52.60 15.41 -128.00 -1.97 -54.57 16 17 O -1.01 -46.38 16.73 -128.00 -2.14 -48.52 16 18 N -1.08 -39.67 3.45 -166.38 -0.57 -40.24 16 19 C 0.16 4.83 3.24 45.71 0.15 4.97 16 20 H 0.08 2.47 7.89 -2.39 -0.02 2.45 16 21 C -0.14 -3.31 6.59 31.32 0.21 -3.10 16 22 C -0.11 -1.75 6.84 31.69 0.22 -1.53 16 23 C -0.10 -1.81 6.32 31.91 0.20 -1.61 16 24 C -0.08 -2.08 3.33 -10.46 -0.03 -2.12 16 25 H 0.13 2.77 8.14 -2.39 -0.02 2.75 16 26 C 0.45 13.85 7.33 71.24 0.52 14.37 16 27 O -0.47 -18.27 9.34 21.98 0.21 -18.07 16 28 O -0.52 -13.58 13.42 -51.46 -0.69 -14.27 16 29 H 0.29 12.30 8.30 -92.71 -0.77 11.53 16 30 H 0.12 6.05 6.09 -2.91 -0.02 6.03 16 31 H 0.12 4.54 8.06 -2.91 -0.02 4.52 16 32 H 0.12 4.48 8.06 -2.91 -0.02 4.46 16 33 H 0.12 5.00 7.33 -2.91 -0.02 4.97 16 34 H 0.42 14.98 6.68 -96.74 -0.65 14.33 16 35 H 0.08 1.83 8.14 -2.38 -0.02 1.81 16 36 H 0.07 1.75 7.92 -2.39 -0.02 1.74 16 37 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.07 1.27 8.05 -2.39 -0.02 1.25 16 40 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.41 9.04 9.10 -74.06 -0.67 8.37 16 Total: -1.00 -67.77 341.48 -0.81 -68.58 By element: Atomic # 1 Polarization: 45.47 SS G_CDS: -0.22 Total: 45.25 kcal Atomic # 6 Polarization: -66.11 SS G_CDS: 2.61 Total: -63.49 kcal Atomic # 7 Polarization: -77.36 SS G_CDS: -0.34 Total: -77.70 kcal Atomic # 8 Polarization: -130.84 SS G_CDS: -4.60 Total: -135.44 kcal Atomic # 14 Polarization: 37.21 SS G_CDS: 2.03 Total: 39.24 kcal Atomic # 16 Polarization: 123.84 SS G_CDS: -0.29 Total: 123.56 kcal Total: -67.77 -0.81 -68.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574242036.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.420 kcal (2) G-P(sol) polarization free energy of solvation -67.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds