Wall clock time and date at job start Tue Mar 31 2020 22:02:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86794 * 120.00125 * 2 1 4 4 H 1.48505 * 109.47240 * 240.00093 * 3 2 1 5 5 H 1.48503 * 109.47161 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46575 * 120.00395 * 3 2 1 7 7 C 1.39954 * 119.99590 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99479 * 197.84622 * 7 2 1 9 9 C 1.41396 * 120.00029 * 17.84570 * 7 2 1 10 10 C 1.40714 * 120.24723 * 24.38022 * 9 7 2 11 11 C 1.37618 * 119.74734 * 180.02562 * 10 9 7 12 12 C 1.38633 * 120.24653 * 0.02562 * 11 10 9 13 13 C 1.50693 * 119.74778 * 179.97438 * 12 11 10 14 14 S 1.81396 * 109.47275 * 89.99944 * 13 12 11 15 15 O 1.42101 * 110.54465 * 68.37558 * 14 13 12 16 16 O 1.42099 * 110.54387 * 291.62232 * 14 13 12 17 17 N 1.65598 * 104.45049 * 179.97438 * 14 13 12 18 18 C 1.46506 * 120.00140 * 64.99885 * 17 14 13 19 19 H 1.09004 * 112.90280 * 13.75233 * 18 17 14 20 20 C 1.53778 * 113.61577 * 144.99849 * 18 17 14 21 21 C 1.53781 * 87.08169 * 89.11711 * 20 18 17 22 22 H 1.08997 * 113.61510 * 270.79948 * 21 20 18 23 23 C 1.50700 * 113.61758 * 139.97930 * 21 20 18 24 24 O 1.20832 * 119.99722 * 1.53280 * 23 21 20 25 25 O 1.34219 * 120.00329 * 181.53096 * 23 21 20 26 26 C 1.53782 * 87.16974 * 25.38937 * 21 20 18 27 27 C 1.38635 * 120.50268 * 0.24802 * 12 11 10 28 28 C 1.37627 * 120.24388 * 359.45004 * 27 12 11 29 29 H 0.97003 * 119.99794 * 359.97438 * 1 2 3 30 30 H 1.08006 * 120.12284 * 0.04670 * 10 9 7 31 31 H 1.07995 * 119.87512 * 179.97438 * 11 10 9 32 32 H 1.09001 * 109.47468 * 329.99741 * 13 12 11 33 33 H 1.09006 * 109.47164 * 209.99583 * 13 12 11 34 34 H 0.97002 * 120.00373 * 244.99428 * 17 14 13 35 35 H 1.09001 * 113.61501 * 334.57102 * 20 18 17 36 36 H 1.08995 * 113.69373 * 203.67624 * 20 18 17 37 37 H 0.96705 * 117.00562 * 180.02562 * 25 23 21 38 38 H 1.09003 * 113.61565 * 89.16326 * 26 21 20 39 39 H 1.08997 * 113.61239 * 220.05985 * 26 21 20 40 40 H 1.07997 * 119.87590 * 179.70663 * 27 12 11 41 41 H 1.08006 * 120.12338 * 180.27158 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.0960 1.6963 -1.2125 5 1 1.2772 2.7464 0.0006 6 1 3.0960 1.6961 1.2125 7 6 2.0079 -1.2121 -0.0005 8 1 3.0489 -1.2347 0.2861 9 6 1.3519 -2.4069 -0.3763 10 6 0.2204 -2.3618 -1.2117 11 6 -0.4104 -3.5310 -1.5706 12 6 0.0645 -4.7500 -1.1119 13 6 -0.6354 -6.0234 -1.5115 14 16 0.0938 -6.6581 -3.0464 15 8 1.4218 -7.1092 -2.8183 16 8 -0.2110 -5.7984 -4.1360 17 7 -0.7575 -8.0419 -3.3669 18 6 -2.1869 -7.9669 -3.6793 19 1 -2.5194 -6.9534 -3.9038 20 6 -2.6473 -9.0092 -4.7119 21 6 -2.9016 -9.9556 -3.5267 22 1 -2.0340 -10.5561 -3.2535 23 6 -4.1592 -10.7740 -3.6667 24 8 -4.8417 -10.6681 -4.6582 25 8 -4.5211 -11.6207 -2.6901 26 6 -3.0783 -8.6981 -2.6592 27 6 1.1749 -4.8061 -0.2839 28 6 1.8253 -3.6499 0.0828 29 1 -0.4850 0.8401 0.0004 30 1 -0.1512 -1.4131 -1.5701 31 1 -1.2792 -3.4987 -2.2113 32 1 -1.6949 -5.8217 -1.6688 33 1 -0.5201 -6.7648 -0.7208 34 1 -0.3097 -8.9022 -3.3479 35 1 -1.8519 -9.3461 -5.3767 36 1 -3.5538 -8.7255 -5.2464 37 1 -5.3354 -12.1245 -2.8252 38 1 -4.1032 -8.3280 -2.6304 39 1 -2.6304 -8.7843 -1.6692 40 1 1.5334 -5.7608 0.0714 41 1 2.6929 -3.6962 0.7245 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574790728.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:02:01 Heat of formation + Delta-G solvation = -132.669457 kcal Electronic energy + Delta-G solvation = -26401.979859 eV Core-core repulsion = 22373.944119 eV Total energy + Delta-G solvation = -4028.035740 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.06222 -38.92530 -37.80259 -36.65668 -36.42682 -35.50811 -34.19438 -32.88539 -31.53508 -29.45857 -27.87783 -27.00916 -26.15240 -24.25277 -22.38933 -21.18982 -20.47786 -19.93399 -19.24085 -18.47441 -17.71967 -17.46009 -16.83528 -16.38453 -16.05115 -15.94503 -15.42066 -14.99706 -14.56051 -14.47564 -14.02219 -13.89353 -13.78095 -13.29742 -12.90275 -12.70917 -12.53668 -12.19606 -12.09716 -11.92559 -11.78284 -11.66857 -11.61104 -11.60075 -11.47468 -11.22972 -11.16704 -11.12244 -10.84657 -10.78761 -10.66702 -10.29974 -9.86972 -9.58359 -9.53973 -9.23514 -7.63563 -7.47442 -6.94422 -4.51597 0.54796 1.80688 2.62085 2.67227 2.94006 2.95941 2.99298 3.01151 3.10884 3.81018 3.91280 4.00317 4.14685 4.31778 4.44751 4.48974 4.59212 4.88855 4.99235 5.19825 5.29054 5.30115 5.32383 5.50119 5.51977 5.52981 5.61838 6.01308 6.05320 6.12395 6.17885 6.24037 6.81547 6.89365 6.90351 7.07953 7.16585 7.43878 7.52044 7.64626 7.87621 7.88774 8.10930 8.45843 8.70312 8.78249 9.98759 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.026335 B = 0.002272 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.986863 B =12321.442573 C =12578.546771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.781 5.781 2 C 0.074 3.926 3 Si 0.913 3.087 4 H -0.261 1.261 5 H -0.277 1.277 6 H -0.264 1.264 7 C -0.448 4.448 8 H 0.083 0.917 9 C 0.118 3.882 10 C -0.167 4.167 11 C -0.080 4.080 12 C -0.239 4.239 13 C -0.517 4.517 14 S 2.575 3.425 15 O -0.963 6.963 16 O -0.960 6.960 17 N -1.111 6.111 18 C 0.128 3.872 19 H 0.116 0.884 20 C -0.124 4.124 21 C -0.112 4.112 22 H 0.126 0.874 23 C 0.489 3.511 24 O -0.515 6.515 25 O -0.516 6.516 26 C -0.140 4.140 27 C -0.067 4.067 28 C -0.226 4.226 29 H 0.285 0.715 30 H 0.123 0.877 31 H 0.095 0.905 32 H 0.121 0.879 33 H 0.122 0.878 34 H 0.412 0.588 35 H 0.087 0.913 36 H 0.109 0.891 37 H 0.409 0.591 38 H 0.099 0.901 39 H 0.092 0.908 40 H 0.095 0.905 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.251 -16.157 -3.401 18.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.405 5.405 2 C -0.146 4.146 3 Si 0.737 3.263 4 H -0.185 1.185 5 H -0.202 1.202 6 H -0.188 1.188 7 C -0.477 4.477 8 H 0.101 0.899 9 C 0.114 3.886 10 C -0.186 4.186 11 C -0.100 4.100 12 C -0.244 4.244 13 C -0.648 4.648 14 S 2.675 3.325 15 O -0.953 6.953 16 O -0.950 6.950 17 N -0.865 5.865 18 C 0.019 3.981 19 H 0.134 0.866 20 C -0.163 4.163 21 C -0.131 4.131 22 H 0.144 0.856 23 C 0.331 3.669 24 O -0.403 6.403 25 O -0.327 6.327 26 C -0.180 4.180 27 C -0.087 4.087 28 C -0.246 4.246 29 H 0.096 0.904 30 H 0.141 0.859 31 H 0.113 0.887 32 H 0.139 0.861 33 H 0.140 0.860 34 H 0.245 0.755 35 H 0.106 0.894 36 H 0.127 0.873 37 H 0.267 0.733 38 H 0.118 0.882 39 H 0.111 0.889 40 H 0.113 0.887 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -7.689 -15.311 -4.222 17.645 hybrid contribution -0.622 -0.263 0.549 0.870 sum -8.311 -15.574 -3.673 18.031 Atomic orbital electron populations 1.69806 1.07750 1.29886 1.33045 1.26020 0.94823 1.01729 0.92036 0.86279 0.80163 0.79643 0.80232 1.18535 1.20158 1.18807 1.19723 0.98328 0.91195 1.38434 0.89897 1.17736 0.90829 0.92172 0.87849 1.21327 0.99368 0.96855 1.01091 1.20601 0.98351 0.92382 0.98636 1.18092 1.02885 0.90487 1.12966 1.28923 1.10304 1.06914 1.18671 1.06786 0.74583 0.73118 0.78034 1.93544 1.34778 1.79842 1.87157 1.93542 1.84764 1.66036 1.50637 1.55852 1.17785 1.25865 1.87005 1.21577 0.80581 1.00730 0.95238 0.86620 1.23347 1.03308 0.93986 0.95650 1.22592 0.94066 0.94980 1.01489 0.85597 1.23415 0.86853 0.77050 0.79586 1.90726 1.53921 1.64701 1.30920 1.84567 1.46975 1.53369 1.47815 1.23559 1.01821 0.93243 0.99371 1.20475 0.94667 0.97146 0.96413 1.20985 1.03839 0.92608 1.07159 0.90385 0.85937 0.88673 0.86097 0.85989 0.75539 0.89449 0.87302 0.73280 0.88232 0.88945 0.88658 0.88320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.20 10.95 55.55 0.61 -18.59 16 2 C 0.07 1.77 5.14 -17.34 -0.09 1.68 16 3 Si 0.91 17.83 29.59 -169.99 -5.03 12.80 16 4 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 5 H -0.28 -5.25 7.11 56.52 0.40 -4.85 16 6 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 7 C -0.45 -11.39 9.05 -37.74 -0.34 -11.73 16 8 H 0.08 2.01 7.91 -52.49 -0.42 1.59 16 9 C 0.12 3.04 5.57 -106.83 -0.60 2.45 16 10 C -0.17 -4.22 8.70 -38.87 -0.34 -4.56 16 11 C -0.08 -1.82 9.67 -39.66 -0.38 -2.20 16 12 C -0.24 -4.98 5.16 -104.33 -0.54 -5.52 16 13 C -0.52 -7.81 6.19 36.00 0.22 -7.59 16 14 S 2.57 40.23 5.41 -107.50 -0.58 39.65 16 15 O -0.96 -18.17 18.08 -57.54 -1.04 -19.21 16 16 O -0.96 -18.34 17.59 -57.54 -1.01 -19.35 16 17 N -1.11 -11.48 5.61 -4.12 -0.02 -11.50 16 18 C 0.13 1.13 4.40 -67.03 -0.29 0.83 16 19 H 0.12 1.04 7.77 -51.93 -0.40 0.64 16 20 C -0.12 -0.99 7.19 -25.92 -0.19 -1.18 16 21 C -0.11 -0.79 4.08 -90.96 -0.37 -1.17 16 22 H 0.13 0.69 8.11 -51.93 -0.42 0.27 16 23 C 0.49 4.09 7.85 36.01 0.28 4.37 16 24 O -0.51 -5.87 16.67 -18.76 -0.31 -6.18 16 25 O -0.52 -3.29 13.42 -39.23 -0.53 -3.81 16 26 C -0.14 -0.97 7.44 -25.83 -0.19 -1.16 16 27 C -0.07 -1.47 9.67 -39.66 -0.38 -1.86 16 28 C -0.23 -5.40 9.80 -38.87 -0.38 -5.79 16 29 H 0.29 6.35 8.30 -40.82 -0.34 6.01 16 30 H 0.12 3.16 6.16 -52.48 -0.32 2.84 16 31 H 0.10 1.93 8.06 -52.49 -0.42 1.50 16 32 H 0.12 1.51 8.08 -51.92 -0.42 1.09 16 33 H 0.12 1.51 8.08 -51.92 -0.42 1.09 16 34 H 0.41 3.39 8.75 -34.47 -0.30 3.09 16 35 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.11 0.91 7.45 -51.93 -0.39 0.52 16 37 H 0.41 0.98 9.10 45.56 0.41 1.40 16 38 H 0.10 0.62 8.09 -51.93 -0.42 0.20 16 39 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.10 1.81 8.06 -52.49 -0.42 1.39 16 41 H 0.10 2.19 8.06 -52.48 -0.42 1.77 16 LS Contribution 366.80 15.07 5.53 5.53 Total: -1.00 -34.18 366.80 -10.32 -44.50 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -4.34 Total: 9.60 kcal Atomic # 6 Polarization: -29.83 SS G_CDS: -3.59 Total: -33.42 kcal Atomic # 7 Polarization: -30.68 SS G_CDS: 0.59 Total: -30.09 kcal Atomic # 8 Polarization: -45.67 SS G_CDS: -2.89 Total: -48.56 kcal Atomic # 14 Polarization: 17.83 SS G_CDS: -5.03 Total: 12.80 kcal Atomic # 16 Polarization: 40.23 SS G_CDS: -0.58 Total: 39.65 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -34.18 -10.32 -44.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574790728.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.166 kcal (2) G-P(sol) polarization free energy of solvation -34.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds