Wall clock time and date at job start Tue Mar 31 2020 22:02:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86794 * 120.00125 * 2 1 4 4 H 1.48505 * 109.47240 * 240.00093 * 3 2 1 5 5 H 1.48503 * 109.47161 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46575 * 120.00395 * 3 2 1 7 7 C 1.39954 * 119.99590 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99479 * 197.84622 * 7 2 1 9 9 C 1.41396 * 120.00029 * 17.84570 * 7 2 1 10 10 C 1.40714 * 120.24723 * 24.38022 * 9 7 2 11 11 C 1.37618 * 119.74734 * 180.02562 * 10 9 7 12 12 C 1.38633 * 120.24653 * 0.02562 * 11 10 9 13 13 C 1.50693 * 119.74778 * 179.97438 * 12 11 10 14 14 S 1.81396 * 109.47275 * 89.99944 * 13 12 11 15 15 O 1.42101 * 110.54465 * 68.37558 * 14 13 12 16 16 O 1.42099 * 110.54387 * 291.62232 * 14 13 12 17 17 N 1.65598 * 104.45049 * 179.97438 * 14 13 12 18 18 C 1.46506 * 120.00140 * 64.99885 * 17 14 13 19 19 H 1.09004 * 112.90280 * 13.75233 * 18 17 14 20 20 C 1.53778 * 113.61577 * 144.99849 * 18 17 14 21 21 C 1.53781 * 87.08169 * 89.11711 * 20 18 17 22 22 H 1.08997 * 113.61510 * 270.79948 * 21 20 18 23 23 C 1.50700 * 113.61758 * 139.97930 * 21 20 18 24 24 O 1.20832 * 119.99722 * 1.53280 * 23 21 20 25 25 O 1.34219 * 120.00329 * 181.53096 * 23 21 20 26 26 C 1.53782 * 87.16974 * 25.38937 * 21 20 18 27 27 C 1.38635 * 120.50268 * 0.24802 * 12 11 10 28 28 C 1.37627 * 120.24388 * 359.45004 * 27 12 11 29 29 H 0.97003 * 119.99794 * 359.97438 * 1 2 3 30 30 H 1.08006 * 120.12284 * 0.04670 * 10 9 7 31 31 H 1.07995 * 119.87512 * 179.97438 * 11 10 9 32 32 H 1.09001 * 109.47468 * 329.99741 * 13 12 11 33 33 H 1.09006 * 109.47164 * 209.99583 * 13 12 11 34 34 H 0.97002 * 120.00373 * 244.99428 * 17 14 13 35 35 H 1.09001 * 113.61501 * 334.57102 * 20 18 17 36 36 H 1.08995 * 113.69373 * 203.67624 * 20 18 17 37 37 H 0.96705 * 117.00562 * 180.02562 * 25 23 21 38 38 H 1.09003 * 113.61565 * 89.16326 * 26 21 20 39 39 H 1.08997 * 113.61239 * 220.05985 * 26 21 20 40 40 H 1.07997 * 119.87590 * 179.70663 * 27 12 11 41 41 H 1.08006 * 120.12338 * 180.27158 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.0960 1.6963 -1.2125 5 1 1.2772 2.7464 0.0006 6 1 3.0960 1.6961 1.2125 7 6 2.0079 -1.2121 -0.0005 8 1 3.0489 -1.2347 0.2861 9 6 1.3519 -2.4069 -0.3763 10 6 0.2204 -2.3618 -1.2117 11 6 -0.4104 -3.5310 -1.5706 12 6 0.0645 -4.7500 -1.1119 13 6 -0.6354 -6.0234 -1.5115 14 16 0.0938 -6.6581 -3.0464 15 8 1.4218 -7.1092 -2.8183 16 8 -0.2110 -5.7984 -4.1360 17 7 -0.7575 -8.0419 -3.3669 18 6 -2.1869 -7.9669 -3.6793 19 1 -2.5194 -6.9534 -3.9038 20 6 -2.6473 -9.0092 -4.7119 21 6 -2.9016 -9.9556 -3.5267 22 1 -2.0340 -10.5561 -3.2535 23 6 -4.1592 -10.7740 -3.6667 24 8 -4.8417 -10.6681 -4.6582 25 8 -4.5211 -11.6207 -2.6901 26 6 -3.0783 -8.6981 -2.6592 27 6 1.1749 -4.8061 -0.2839 28 6 1.8253 -3.6499 0.0828 29 1 -0.4850 0.8401 0.0004 30 1 -0.1512 -1.4131 -1.5701 31 1 -1.2792 -3.4987 -2.2113 32 1 -1.6949 -5.8217 -1.6688 33 1 -0.5201 -6.7648 -0.7208 34 1 -0.3097 -8.9022 -3.3479 35 1 -1.8519 -9.3461 -5.3767 36 1 -3.5538 -8.7255 -5.2464 37 1 -5.3354 -12.1245 -2.8252 38 1 -4.1032 -8.3280 -2.6304 39 1 -2.6304 -8.7843 -1.6692 40 1 1.5334 -5.7608 0.0714 41 1 2.6929 -3.6962 0.7245 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001574790728.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:02:00 Heat of formation + Delta-G solvation = -157.670640 kcal Electronic energy + Delta-G solvation = -26403.063991 eV Core-core repulsion = 22373.944119 eV Total energy + Delta-G solvation = -4029.119872 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.68003 -39.56990 -39.55585 -38.04106 -37.03712 -36.89885 -35.93176 -33.74095 -33.18346 -31.25318 -29.50957 -27.65906 -26.73538 -25.93373 -23.05228 -22.97021 -22.14419 -20.78517 -20.16833 -19.28167 -19.18533 -18.70327 -17.62157 -17.45292 -17.23942 -16.97028 -16.74129 -16.13972 -16.00348 -15.64994 -15.48146 -15.17362 -14.61683 -14.36420 -14.01240 -13.88225 -13.61866 -13.53528 -13.44145 -13.35778 -13.22138 -13.08480 -13.01119 -12.76211 -12.55462 -12.54009 -12.41262 -12.31983 -11.96375 -11.75981 -11.68384 -11.56775 -11.32519 -11.30600 -11.01176 -10.41804 -9.44715 -9.25476 -8.70471 -6.39249 -0.71360 0.90661 1.09092 1.19914 1.38133 1.48984 1.53340 1.87440 2.18483 2.19526 2.64666 2.91575 3.29734 3.35017 3.43888 3.67317 3.70753 3.81358 4.00095 4.08913 4.27585 4.46737 4.48853 4.55049 4.64194 4.77073 4.77954 4.86110 4.99522 5.01440 5.05043 5.09897 5.28007 5.36599 5.38597 5.63189 5.64477 5.86203 6.03987 6.06327 6.15723 6.30450 6.62498 6.86471 6.94862 7.02363 8.25699 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.026335 B = 0.002272 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.986863 B =12321.442573 C =12578.546771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.815 5.815 2 C 0.035 3.965 3 Si 0.984 3.016 4 H -0.262 1.262 5 H -0.265 1.265 6 H -0.257 1.257 7 C -0.492 4.492 8 H 0.080 0.920 9 C 0.084 3.916 10 C -0.196 4.196 11 C -0.091 4.091 12 C -0.231 4.231 13 C -0.522 4.522 14 S 2.603 3.397 15 O -0.996 6.996 16 O -0.998 6.998 17 N -1.091 6.091 18 C 0.114 3.886 19 H 0.114 0.886 20 C -0.126 4.126 21 C -0.110 4.110 22 H 0.147 0.853 23 C 0.493 3.507 24 O -0.552 6.552 25 O -0.512 6.512 26 C -0.131 4.131 27 C -0.077 4.077 28 C -0.247 4.247 29 H 0.292 0.708 30 H 0.106 0.894 31 H 0.116 0.884 32 H 0.154 0.846 33 H 0.160 0.840 34 H 0.425 0.575 35 H 0.089 0.911 36 H 0.103 0.897 37 H 0.425 0.575 38 H 0.107 0.893 39 H 0.109 0.891 40 H 0.127 0.873 41 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.154 -18.369 -3.085 20.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C -0.182 4.182 3 Si 0.804 3.196 4 H -0.186 1.186 5 H -0.190 1.190 6 H -0.181 1.181 7 C -0.520 4.520 8 H 0.098 0.902 9 C 0.081 3.919 10 C -0.216 4.216 11 C -0.110 4.110 12 C -0.235 4.235 13 C -0.653 4.653 14 S 2.702 3.298 15 O -0.986 6.986 16 O -0.988 6.988 17 N -0.850 5.850 18 C 0.006 3.994 19 H 0.132 0.868 20 C -0.165 4.165 21 C -0.129 4.129 22 H 0.164 0.836 23 C 0.337 3.663 24 O -0.443 6.443 25 O -0.326 6.326 26 C -0.171 4.171 27 C -0.096 4.096 28 C -0.267 4.267 29 H 0.102 0.898 30 H 0.124 0.876 31 H 0.134 0.866 32 H 0.172 0.828 33 H 0.178 0.822 34 H 0.262 0.738 35 H 0.107 0.893 36 H 0.121 0.879 37 H 0.287 0.713 38 H 0.126 0.874 39 H 0.127 0.873 40 H 0.145 0.855 41 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -8.584 -17.527 -3.867 19.895 hybrid contribution -0.498 0.079 0.375 0.628 sum -9.081 -17.448 -3.492 19.978 Atomic orbital electron populations 1.69850 1.09035 1.31018 1.34057 1.26827 0.95571 1.04689 0.91098 0.85222 0.78835 0.75385 0.80138 1.18642 1.18951 1.18113 1.19936 0.98589 0.92464 1.41053 0.90159 1.18087 0.91716 0.93311 0.88804 1.21341 1.00425 0.97364 1.02429 1.20945 0.98861 0.92489 0.98730 1.18550 1.01995 0.92249 1.10748 1.29022 1.11644 1.04975 1.19692 1.05345 0.73789 0.73371 0.77310 1.93508 1.37093 1.80556 1.87485 1.93511 1.85217 1.67906 1.52145 1.55217 1.18476 1.24798 1.86501 1.21800 0.79505 1.01238 0.96843 0.86813 1.23326 1.03081 0.94114 0.95971 1.22678 0.94270 0.95114 1.00812 0.83552 1.23613 0.86725 0.76837 0.79114 1.90723 1.55159 1.65976 1.32415 1.84529 1.48053 1.53029 1.46941 1.23555 1.01819 0.92178 0.99503 1.20900 0.94702 0.97728 0.96273 1.21236 1.04608 0.93037 1.07781 0.89757 0.87644 0.86601 0.82816 0.82170 0.73786 0.89266 0.87872 0.71324 0.87417 0.87292 0.85488 0.87781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -41.70 10.95 21.83 0.24 -41.47 16 2 C 0.03 1.72 5.14 85.26 0.44 2.15 16 3 Si 0.98 37.52 29.59 68.60 2.03 39.56 16 4 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 5 H -0.27 -9.50 7.11 99.48 0.71 -8.79 16 6 H -0.26 -9.43 7.11 99.48 0.71 -8.72 16 7 C -0.49 -26.31 9.05 23.46 0.21 -26.10 16 8 H 0.08 4.12 7.91 -2.91 -0.02 4.09 16 9 C 0.08 4.53 5.57 -21.29 -0.12 4.41 16 10 C -0.20 -10.31 8.70 22.73 0.20 -10.11 16 11 C -0.09 -4.12 9.67 22.22 0.21 -3.90 16 12 C -0.23 -9.24 5.16 -19.68 -0.10 -9.34 16 13 C -0.52 -13.75 6.19 71.23 0.44 -13.31 16 14 S 2.60 74.37 5.41 -56.49 -0.31 74.06 16 15 O -1.00 -35.37 18.08 -127.65 -2.31 -37.68 16 16 O -1.00 -36.62 17.59 -127.65 -2.24 -38.86 16 17 N -1.09 -18.67 5.61 -166.95 -0.94 -19.60 16 18 C 0.11 1.64 4.40 45.57 0.20 1.84 16 19 H 0.11 1.73 7.77 -2.38 -0.02 1.71 16 20 C -0.13 -1.70 7.19 31.12 0.22 -1.48 16 21 C -0.11 -1.18 4.08 -11.01 -0.04 -1.22 16 22 H 0.15 0.97 8.11 -2.39 -0.02 0.96 16 23 C 0.49 6.96 7.85 71.24 0.56 7.52 16 24 O -0.55 -11.71 16.67 21.95 0.37 -11.34 16 25 O -0.51 -4.97 13.42 -51.31 -0.69 -5.66 16 26 C -0.13 -1.28 7.44 31.18 0.23 -1.05 16 27 C -0.08 -3.27 9.67 22.22 0.21 -3.05 16 28 C -0.25 -12.07 9.80 22.73 0.22 -11.85 16 29 H 0.29 13.42 8.30 -92.71 -0.77 12.65 16 30 H 0.11 5.77 6.16 -2.91 -0.02 5.75 16 31 H 0.12 4.61 8.06 -2.91 -0.02 4.58 16 32 H 0.15 3.11 8.08 -2.39 -0.02 3.09 16 33 H 0.16 3.08 8.08 -2.39 -0.02 3.06 16 34 H 0.43 5.35 8.75 -96.74 -0.85 4.50 16 35 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.10 1.56 7.45 -2.39 -0.02 1.54 16 37 H 0.43 0.93 9.10 -74.05 -0.67 0.25 16 38 H 0.11 0.93 8.09 -2.39 -0.02 0.91 16 39 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.13 4.49 8.06 -2.91 -0.02 4.47 16 41 H 0.10 4.77 8.06 -2.91 -0.02 4.75 16 Total: -1.00 -77.61 366.80 -1.39 -79.00 By element: Atomic # 1 Polarization: 27.92 SS G_CDS: -0.43 Total: 27.48 kcal Atomic # 6 Polarization: -68.38 SS G_CDS: 2.89 Total: -65.49 kcal Atomic # 7 Polarization: -60.37 SS G_CDS: -0.70 Total: -61.07 kcal Atomic # 8 Polarization: -88.67 SS G_CDS: -4.88 Total: -93.55 kcal Atomic # 14 Polarization: 37.52 SS G_CDS: 2.03 Total: 39.56 kcal Atomic # 16 Polarization: 74.37 SS G_CDS: -0.31 Total: 74.06 kcal Total: -77.61 -1.39 -79.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574790728.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.670 kcal (2) G-P(sol) polarization free energy of solvation -77.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds