Wall clock time and date at job start Tue Mar 31 2020 22:14:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.39662 * 120.12154 * 217.41648 * 3 2 1 5 5 C 1.37956 * 119.96157 * 179.97438 * 4 3 2 6 6 C 1.38292 * 120.21053 * 359.72276 * 5 4 3 7 7 C 1.38821 * 120.24650 * 0.55280 * 6 5 4 8 8 O 1.35911 * 119.98069 * 179.72267 * 7 6 5 9 9 C 1.42902 * 116.99738 * 359.72765 * 8 7 6 10 10 C 1.50707 * 109.47064 * 179.97438 * 9 8 7 11 11 O 1.20830 * 119.99700 * 359.97438 * 10 9 8 12 12 O 1.34261 * 120.00053 * 179.97438 * 10 9 8 13 13 C 1.35927 * 116.99955 * 175.01134 * 12 10 9 14 14 C 1.38830 * 120.01872 * 255.02551 * 13 12 10 15 15 C 1.38192 * 120.07719 * 179.72111 * 14 13 12 16 16 C 1.38160 * 120.12307 * 0.55067 * 15 14 13 17 17 C 1.38897 * 120.03939 * 359.72542 * 16 15 14 18 18 O 1.35753 * 120.03929 * 179.97438 * 17 16 15 19 19 C 1.34821 * 116.99969 * 185.61640 * 18 17 16 20 20 H 1.08003 * 120.00598 * 354.94157 * 19 18 17 21 21 C 1.38657 * 120.00044 * 174.94114 * 19 18 17 22 22 N 1.31560 * 120.00320 * 180.02562 * 21 19 18 23 23 Si 1.86807 * 119.99828 * 0.02562 * 21 19 18 24 24 H 1.48491 * 109.47276 * 89.99903 * 23 21 19 25 25 H 1.48501 * 109.46902 * 210.00117 * 23 21 19 26 26 H 1.48498 * 109.46796 * 329.99915 * 23 21 19 27 27 C 1.38565 * 120.01805 * 75.29630 * 13 12 10 28 28 C 1.38478 * 120.03859 * 359.44503 * 7 6 5 29 29 H 1.08001 * 120.02373 * 359.95027 * 4 3 2 30 30 H 1.08002 * 119.89670 * 179.97438 * 5 4 3 31 31 H 1.08001 * 119.87701 * 180.27105 * 6 5 4 32 32 H 1.08995 * 109.47524 * 60.00100 * 9 8 7 33 33 H 1.09002 * 109.47123 * 299.99579 * 9 8 7 34 34 H 1.07992 * 119.96113 * 359.97438 * 14 13 12 35 35 H 1.07996 * 119.93553 * 180.27335 * 15 14 13 36 36 H 1.07992 * 119.97921 * 179.69799 * 16 15 14 37 37 H 0.96998 * 120.00068 * 180.02562 * 22 21 19 38 38 H 1.07995 * 120.06675 * 359.97438 * 27 13 12 39 39 H 1.08007 * 120.10496 * 180.25502 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2684 0.9604 0.7340 5 6 4.6480 0.9576 0.7321 6 6 5.3409 0.0034 0.0098 7 6 4.6535 -0.9511 -0.7274 8 8 5.3400 -1.8830 -1.4398 9 6 6.7666 -1.8170 -1.3891 10 6 7.3509 -2.9210 -2.2323 11 8 6.6205 -3.6861 -2.8164 12 8 8.6830 -3.0543 -2.3346 13 6 9.1442 -4.1309 -3.0243 14 6 9.6850 -5.2128 -2.3428 15 6 10.1490 -6.3104 -3.0426 16 6 10.0868 -6.3298 -4.4226 17 6 9.5520 -5.2477 -5.1098 18 8 9.4913 -5.2666 -6.4659 19 6 9.0698 -4.1404 -7.0755 20 1 8.7214 -3.3052 -6.4860 21 6 9.0834 -4.0544 -8.4593 22 7 8.6726 -2.9552 -9.0542 23 14 9.6853 -5.4992 -9.4790 24 1 8.5422 -6.3932 -9.7939 25 1 10.2845 -4.9981 -10.7421 26 1 10.7079 -6.2547 -8.7117 27 6 9.0801 -4.1468 -4.4084 28 6 3.2688 -0.9580 -0.7328 29 1 2.7304 1.7046 1.3025 30 1 5.1886 1.7006 1.2997 31 1 6.4209 0.0036 0.0156 32 1 7.0993 -1.9333 -0.3577 33 1 7.0995 -0.8521 -1.7717 34 1 9.7393 -5.1983 -1.2643 35 1 10.5652 -7.1526 -2.5098 36 1 10.4546 -7.1867 -4.9673 37 1 8.6818 -2.8952 -10.0223 38 1 8.6634 -3.3044 -4.9405 39 1 2.7329 -1.7027 -1.3027 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001583692085.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:39 Heat of formation + Delta-G solvation = -40.740526 kcal Electronic energy + Delta-G solvation = -26634.610596 eV Core-core repulsion = 22475.117243 eV Total energy + Delta-G solvation = -4159.493353 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.098 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.26761 -40.59006 -39.08755 -38.37556 -37.13270 -36.51792 -35.92534 -32.46890 -31.94470 -31.16539 -30.12316 -29.37813 -28.60815 -25.43125 -24.61067 -23.28283 -22.85465 -21.68112 -20.81126 -19.77999 -18.35348 -18.17786 -17.65216 -17.01474 -16.95400 -16.67278 -16.25214 -15.80078 -15.60844 -15.38470 -14.60086 -14.55485 -14.26478 -14.13514 -13.98640 -13.81569 -13.67601 -13.38745 -13.10879 -12.91795 -12.86695 -12.55202 -12.31390 -12.29989 -11.80532 -11.62384 -11.52940 -11.43686 -11.19655 -10.87227 -10.57585 -10.48035 -10.28869 -9.59808 -9.54199 -8.96370 -8.80969 -8.35992 -7.58750 -6.49585 -4.17492 0.24336 0.85415 1.39434 1.99199 2.04045 2.15974 2.36968 2.51008 3.17745 3.19058 3.22283 3.34680 3.39799 3.56515 4.16394 4.17237 4.27164 4.44074 4.49221 4.56868 4.58234 4.64288 4.73528 4.81273 4.94597 5.01529 5.34360 5.41658 5.59825 5.61140 5.77049 5.77877 5.79919 5.96232 5.99781 6.10453 6.29737 6.68196 6.77784 6.84548 6.91249 6.97674 7.07173 7.32818 7.64864 7.87207 7.95720 8.84158 9.41946 10.57597 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.013358 B = 0.002245 C = 0.002033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2095.624209 B =12469.472769 C =13770.803453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C 0.256 3.744 3 C 0.011 3.989 4 C -0.108 4.108 5 C -0.077 4.077 6 C -0.181 4.181 7 C 0.135 3.865 8 O -0.288 6.288 9 C 0.073 3.927 10 C 0.453 3.547 11 O -0.456 6.456 12 O -0.290 6.290 13 C 0.117 3.883 14 C -0.202 4.202 15 C -0.067 4.067 16 C -0.184 4.184 17 C 0.169 3.831 18 O -0.208 6.208 19 C -0.393 4.393 20 H 0.106 0.894 21 C 0.066 3.934 22 N -0.874 5.874 23 Si 0.907 3.093 24 H -0.272 1.272 25 H -0.281 1.281 26 H -0.258 1.258 27 C -0.216 4.216 28 C -0.098 4.098 29 H 0.135 0.865 30 H 0.139 0.861 31 H 0.140 0.860 32 H 0.111 0.889 33 H 0.112 0.888 34 H 0.118 0.882 35 H 0.125 0.875 36 H 0.124 0.876 37 H 0.281 0.719 38 H 0.139 0.861 39 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.262 6.487 21.018 22.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.085 5.085 2 C -0.060 4.060 3 C 0.008 3.992 4 C -0.129 4.129 5 C -0.095 4.095 6 C -0.200 4.200 7 C 0.089 3.911 8 O -0.201 6.201 9 C -0.003 4.003 10 C 0.293 3.707 11 O -0.338 6.338 12 O -0.206 6.206 13 C 0.076 3.924 14 C -0.221 4.221 15 C -0.085 4.085 16 C -0.203 4.203 17 C 0.116 3.884 18 O -0.112 6.112 19 C -0.468 4.468 20 H 0.123 0.877 21 C -0.138 4.138 22 N -0.511 5.511 23 Si 0.732 3.268 24 H -0.197 1.197 25 H -0.207 1.207 26 H -0.182 1.182 27 C -0.235 4.235 28 C -0.120 4.120 29 H 0.153 0.847 30 H 0.157 0.843 31 H 0.158 0.842 32 H 0.128 0.872 33 H 0.130 0.870 34 H 0.136 0.864 35 H 0.143 0.857 36 H 0.142 0.858 37 H 0.091 0.909 38 H 0.157 0.843 39 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -4.326 6.023 20.268 21.582 hybrid contribution 0.742 -0.224 -0.578 0.967 sum -3.584 5.800 19.690 20.837 Atomic orbital electron populations 1.81282 1.11958 1.07454 1.07777 1.25550 0.92484 0.93971 0.93976 1.15613 0.84318 0.98155 1.01109 1.21108 0.94369 0.98146 0.99266 1.20896 0.93406 0.97645 0.97594 1.21592 1.01190 0.96892 1.00362 1.18681 0.91219 0.89085 0.92110 1.86138 1.17756 1.50105 1.66136 1.21903 0.79815 0.97828 1.00781 1.23107 0.81537 0.85346 0.80712 1.90800 1.59969 1.42093 1.40957 1.84447 1.22944 1.44796 1.68367 1.18178 0.98544 0.86086 0.89555 1.20562 1.08843 0.93385 0.99298 1.20501 0.98198 0.96809 0.92974 1.20357 1.06938 0.99191 0.93793 1.18851 0.92814 0.92781 0.83945 1.83590 1.75127 1.38254 1.14267 1.20757 1.43020 0.91855 0.91143 0.87697 1.24485 0.95891 0.97716 0.95749 1.69643 1.44454 1.26023 1.10989 0.86159 0.79998 0.81615 0.79031 1.19729 1.20656 1.18227 1.21332 1.07981 1.01518 0.92697 1.20381 0.91119 0.99738 1.00722 0.84687 0.84301 0.84227 0.87153 0.87016 0.86395 0.85671 0.85765 0.90857 0.84308 0.83708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -4.86 18.54 41.84 0.78 -4.08 16 2 C 0.26 2.41 15.33 -22.47 -0.34 2.06 16 3 C 0.01 0.09 5.73 -106.96 -0.61 -0.53 16 4 C -0.11 -0.58 9.75 -39.15 -0.38 -0.96 16 5 C -0.08 -0.35 10.03 -39.66 -0.40 -0.74 16 6 C -0.18 -1.03 9.03 -39.35 -0.36 -1.39 16 7 C 0.13 1.15 6.68 -39.28 -0.26 0.89 16 8 O -0.29 -3.23 9.67 -39.41 -0.38 -3.61 16 9 C 0.07 0.67 5.33 36.01 0.19 0.86 16 10 C 0.45 6.82 7.90 36.01 0.28 7.11 16 11 O -0.46 -9.01 15.93 -25.48 -0.41 -9.41 16 12 O -0.29 -4.63 10.03 -23.62 -0.24 -4.86 16 13 C 0.12 2.20 5.18 -39.24 -0.20 2.00 16 14 C -0.20 -3.31 9.99 -39.38 -0.39 -3.71 16 15 C -0.07 -1.06 10.03 -39.63 -0.40 -1.46 16 16 C -0.18 -3.47 9.99 -39.37 -0.39 -3.87 16 17 C 0.17 3.87 6.65 -39.13 -0.26 3.61 16 18 O -0.21 -5.42 8.58 0.06 0.00 -5.42 16 19 C -0.39 -11.02 9.95 30.89 0.31 -10.72 16 20 H 0.11 3.05 5.44 -52.48 -0.29 2.76 16 21 C 0.07 1.83 5.49 -17.51 -0.10 1.73 16 22 N -0.87 -25.07 13.96 55.48 0.77 -24.29 16 23 Si 0.91 21.35 28.62 -169.99 -4.86 16.48 16 24 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 25 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 26 H -0.26 -6.03 7.11 56.52 0.40 -5.63 16 27 C -0.22 -4.77 8.58 -39.25 -0.34 -5.11 16 28 C -0.10 -0.83 9.69 -39.01 -0.38 -1.21 16 29 H 0.14 0.47 8.06 -52.49 -0.42 0.05 16 30 H 0.14 0.26 8.06 -52.49 -0.42 -0.16 16 31 H 0.14 0.48 6.28 -52.49 -0.33 0.15 16 32 H 0.11 0.61 7.64 -51.93 -0.40 0.21 16 33 H 0.11 0.73 7.67 -51.93 -0.40 0.33 16 34 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 35 H 0.13 1.52 8.06 -52.49 -0.42 1.09 16 36 H 0.12 2.12 8.06 -52.49 -0.42 1.70 16 37 H 0.28 7.42 8.31 -40.82 -0.34 7.08 16 38 H 0.14 3.31 5.64 -52.49 -0.30 3.01 16 39 H 0.15 1.23 8.06 -52.48 -0.42 0.81 16 LS Contribution 361.29 15.07 5.44 5.44 Total: -1.00 -34.20 361.29 -6.30 -40.50 By element: Atomic # 1 Polarization: 4.06 SS G_CDS: -3.38 Total: 0.69 kcal Atomic # 6 Polarization: -7.40 SS G_CDS: -4.03 Total: -11.43 kcal Atomic # 7 Polarization: -29.92 SS G_CDS: 1.55 Total: -28.37 kcal Atomic # 8 Polarization: -22.29 SS G_CDS: -1.02 Total: -23.31 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.86 Total: 16.48 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.20 -6.30 -40.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001583692085.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.244 kcal (2) G-P(sol) polarization free energy of solvation -34.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds