Wall clock time and date at job start Tue Mar 31 2020 23:07:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50698 * 120.00447 * 2 1 4 4 N 1.46504 * 109.47200 * 125.00064 * 3 2 1 5 5 C 1.46501 * 119.99924 * 274.99929 * 4 3 2 6 6 C 1.50701 * 109.47012 * 275.00249 * 5 4 3 7 7 H 1.07997 * 120.00296 * 0.02562 * 6 5 4 8 8 C 1.37879 * 119.99621 * 179.97438 * 6 5 4 9 9 N 1.31509 * 120.00016 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 120.00000 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47207 * 90.00068 * 10 8 6 12 12 H 1.48499 * 109.47241 * 210.00608 * 10 8 6 13 13 H 1.48505 * 109.47152 * 330.00527 * 10 8 6 14 14 S 1.65597 * 119.99894 * 95.00494 * 4 3 2 15 15 O 1.42098 * 104.27600 * 333.92398 * 14 4 3 16 16 O 1.42099 * 104.27442 * 206.06954 * 14 4 3 17 17 C 1.81397 * 104.45217 * 89.99703 * 14 4 3 18 18 C 1.50697 * 109.47183 * 179.97438 * 17 14 4 19 19 C 1.38395 * 119.92624 * 270.29479 * 18 17 14 20 20 C 1.38342 * 120.30516 * 180.25590 * 19 18 17 21 21 C 1.37974 * 120.14875 * 359.44610 * 20 19 18 22 22 C 1.39608 * 119.84372 * 0.27850 * 21 20 19 23 23 C 1.47731 * 120.14574 * 179.97438 * 22 21 20 24 24 O 1.21470 * 119.99879 * 179.97438 * 23 22 21 25 25 O 1.34713 * 119.99818 * 359.97438 * 23 22 21 26 26 C 1.37925 * 119.92592 * 90.00031 * 18 17 14 27 27 H 1.08001 * 120.00278 * 180.02562 * 1 2 3 28 28 H 1.08001 * 119.99830 * 359.97438 * 1 2 3 29 29 H 1.08003 * 120.00137 * 179.97438 * 2 1 3 30 30 H 1.09007 * 109.46840 * 4.99889 * 3 2 1 31 31 H 1.09006 * 109.47248 * 245.00489 * 3 2 1 32 32 H 1.08996 * 109.47112 * 35.00023 * 5 4 3 33 33 H 1.08997 * 109.46564 * 154.99978 * 5 4 3 34 34 H 0.97004 * 119.99816 * 179.97438 * 9 8 6 35 35 H 1.09001 * 109.46879 * 59.99997 * 17 14 4 36 36 H 1.09000 * 109.47095 * 300.00178 * 17 14 4 37 37 H 1.08000 * 119.84625 * 359.97438 * 19 18 17 38 38 H 1.08002 * 119.92904 * 179.72812 * 20 19 18 39 39 H 1.07999 * 120.07593 * 180.25535 * 21 20 19 40 40 H 0.96703 * 116.99394 * 179.97438 * 25 23 22 41 41 H 1.07997 * 120.07375 * 0.04541 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9939 1.3318 1.1314 5 6 2.5286 1.7620 2.4523 6 6 2.5993 3.2645 2.5449 7 1 2.9548 3.8413 1.7039 8 6 2.2091 3.9029 3.7031 9 7 1.7757 3.2006 4.7270 10 14 2.2974 5.7652 3.8182 11 1 1.0131 6.3511 3.3572 12 1 2.5455 6.1629 5.2273 13 1 3.4039 6.2623 2.9615 14 16 4.5713 0.8758 0.9172 15 8 4.5314 -0.0151 -0.1891 16 8 4.9848 0.4305 2.2018 17 6 5.4291 2.4099 0.4687 18 6 6.8913 2.1211 0.2458 19 6 7.7796 2.1991 1.3042 20 6 9.1243 1.9408 1.1074 21 6 9.5870 1.5922 -0.1448 22 6 8.6955 1.5060 -1.2157 23 6 9.1837 1.1339 -2.5594 24 8 8.4056 1.0593 -3.4892 25 8 10.4919 0.8772 -2.7535 26 6 7.3403 1.7737 -1.0112 27 1 -0.5400 -0.9353 0.0004 28 1 -0.5400 0.9353 0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.3586 2.1316 0.0896 31 1 2.6213 1.4025 -0.9315 32 1 1.4985 1.4371 2.5982 33 1 3.1614 1.3203 3.2220 34 1 1.5016 3.6497 5.5419 35 1 5.3212 3.1355 1.2749 36 1 4.9950 2.8150 -0.4454 37 1 7.4220 2.4674 2.2874 38 1 9.8129 2.0078 1.9368 39 1 10.6364 1.3868 -0.2962 40 1 10.7638 0.6374 -3.6500 41 1 6.6454 1.7093 -1.8354 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001588826545.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:12 Heat of formation + Delta-G solvation = -115.141539 kcal Electronic energy + Delta-G solvation = -27181.240664 eV Core-core repulsion = 23153.964992 eV Total energy + Delta-G solvation = -4027.275672 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.63334 -39.03351 -36.67939 -36.36161 -36.31752 -35.37588 -33.31721 -33.20389 -31.93628 -31.47180 -27.54153 -27.51167 -24.99150 -24.95906 -22.50460 -22.01839 -21.21585 -19.68629 -18.39736 -18.12266 -17.58241 -16.91678 -16.55114 -16.18317 -16.00323 -15.88437 -15.75197 -15.35159 -14.74451 -14.49633 -14.47560 -13.71140 -13.64208 -13.40769 -13.03170 -12.92806 -12.52077 -12.49479 -12.16575 -11.89753 -11.81496 -11.77646 -11.57687 -11.43024 -11.31151 -11.21232 -10.96098 -10.85112 -10.81676 -10.72248 -10.53753 -10.12416 -9.88633 -9.28104 -9.04592 -8.94921 -8.56596 -8.09792 -6.18135 -4.26678 0.41053 0.65405 1.21727 2.33453 2.61612 2.73132 3.19599 3.26685 3.27889 3.36469 3.53362 4.17195 4.30023 4.47070 4.52318 4.66682 4.79790 4.89738 5.06966 5.12408 5.16679 5.29770 5.39145 5.45934 5.54712 5.64788 5.67464 5.88630 6.00074 6.11853 6.12445 6.19113 6.27328 6.30403 6.42758 6.58200 6.99817 7.07139 7.33208 7.37315 7.58069 7.63847 7.77930 8.06526 8.78123 9.40258 10.89515 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.011973 B = 0.003788 C = 0.003173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2338.061738 B = 7390.264523 C = 8821.179059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.158 4.158 3 C 0.155 3.845 4 N -0.979 5.979 5 C 0.242 3.758 6 C -0.551 4.551 7 H 0.062 0.938 8 C 0.067 3.933 9 N -0.885 5.885 10 Si 0.893 3.107 11 H -0.279 1.279 12 H -0.284 1.284 13 H -0.273 1.273 14 S 2.607 3.393 15 O -0.967 6.967 16 O -0.947 6.947 17 C -0.596 4.596 18 C -0.091 4.091 19 C -0.066 4.066 20 C -0.130 4.130 21 C -0.060 4.060 22 C -0.132 4.132 23 C 0.529 3.471 24 O -0.510 6.510 25 O -0.513 6.513 26 C -0.044 4.044 27 H 0.093 0.907 28 H 0.097 0.903 29 H 0.108 0.892 30 H 0.087 0.913 31 H 0.074 0.926 32 H 0.042 0.958 33 H 0.055 0.945 34 H 0.266 0.734 35 H 0.157 0.843 36 H 0.138 0.862 37 H 0.144 0.856 38 H 0.139 0.861 39 H 0.141 0.859 40 H 0.414 0.586 41 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.395 -1.933 -10.511 16.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.178 4.178 3 C 0.029 3.971 4 N -0.817 5.817 5 C 0.121 3.879 6 C -0.590 4.590 7 H 0.080 0.920 8 C -0.137 4.137 9 N -0.522 5.522 10 Si 0.720 3.280 11 H -0.205 1.205 12 H -0.210 1.210 13 H -0.198 1.198 14 S 2.698 3.302 15 O -0.957 6.957 16 O -0.938 6.938 17 C -0.721 4.721 18 C -0.093 4.093 19 C -0.085 4.085 20 C -0.148 4.148 21 C -0.078 4.078 22 C -0.133 4.133 23 C 0.373 3.627 24 O -0.399 6.399 25 O -0.325 6.325 26 C -0.063 4.063 27 H 0.111 0.889 28 H 0.116 0.884 29 H 0.126 0.874 30 H 0.105 0.895 31 H 0.092 0.908 32 H 0.060 0.940 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.175 0.825 36 H 0.156 0.844 37 H 0.162 0.838 38 H 0.157 0.843 39 H 0.159 0.841 40 H 0.273 0.727 41 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 12.314 -2.671 -10.052 16.119 hybrid contribution 0.023 1.723 -0.530 1.803 sum 12.336 -0.948 -10.583 16.281 Atomic orbital electron populations 1.23772 0.95799 1.01556 1.01562 1.23427 0.96259 0.99361 0.98779 1.20225 0.93180 0.95681 0.87999 1.57446 1.23799 1.82712 1.17697 1.19270 0.97380 0.94610 0.76673 1.21578 1.45570 0.92028 0.99817 0.91977 1.24952 0.94804 0.98463 0.95488 1.69933 1.42517 1.35685 1.04111 0.86590 0.78556 0.85328 0.77503 1.20497 1.21002 1.19797 1.05119 0.74322 0.76436 0.74275 1.93544 1.86222 1.60285 1.55696 1.93567 1.82032 1.78731 1.39434 1.29914 1.02364 1.26009 1.13847 1.19066 0.93684 1.02788 0.93776 1.21652 0.93136 0.94327 0.99417 1.21213 0.95643 1.00564 0.97358 1.21523 0.99895 0.94633 0.91789 1.18948 0.94334 1.08989 0.91009 1.20847 0.79772 0.73084 0.88972 1.90909 1.56562 1.48617 1.43801 1.84546 1.26981 1.81399 1.39544 1.21268 0.94237 0.93659 0.97162 0.88897 0.88421 0.87411 0.89459 0.90772 0.93968 0.92689 0.92450 0.82545 0.84383 0.83828 0.84322 0.84117 0.72722 0.83730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.77 14.32 29.02 0.42 -2.36 16 2 C -0.16 -2.63 9.84 -36.03 -0.35 -2.98 16 3 C 0.16 2.66 5.69 -5.19 -0.03 2.63 16 4 N -0.98 -19.49 2.68 -116.94 -0.31 -19.80 16 5 C 0.24 5.82 5.41 -5.19 -0.03 5.79 16 6 C -0.55 -13.75 9.38 -34.44 -0.32 -14.07 16 7 H 0.06 1.45 7.81 -52.49 -0.41 1.04 16 8 C 0.07 1.74 5.46 -17.82 -0.10 1.65 16 9 N -0.88 -24.57 13.29 55.43 0.74 -23.83 16 10 Si 0.89 19.90 29.54 -169.99 -5.02 14.88 16 11 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 12 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 13 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 14 S 2.61 49.36 5.35 -107.50 -0.58 48.78 16 15 O -0.97 -19.11 16.99 -57.54 -0.98 -20.09 16 16 O -0.95 -20.92 16.53 -57.54 -0.95 -21.87 16 17 C -0.60 -9.07 6.30 36.00 0.23 -8.84 16 18 C -0.09 -1.32 5.13 -104.68 -0.54 -1.86 16 19 C -0.07 -0.86 9.69 -39.49 -0.38 -1.24 16 20 C -0.13 -1.36 10.03 -39.64 -0.40 -1.76 16 21 C -0.06 -0.62 9.62 -39.17 -0.38 -1.00 16 22 C -0.13 -1.65 5.87 -104.98 -0.62 -2.27 16 23 C 0.53 6.33 8.27 34.61 0.29 6.62 16 24 O -0.51 -7.58 17.13 -19.24 -0.33 -7.91 16 25 O -0.51 -4.16 12.68 -40.53 -0.51 -4.67 16 26 C -0.04 -0.62 9.24 -39.17 -0.36 -0.98 16 27 H 0.09 1.20 8.06 -52.49 -0.42 0.77 16 28 H 0.10 1.37 7.84 -52.49 -0.41 0.95 16 29 H 0.11 1.83 8.06 -52.48 -0.42 1.40 16 30 H 0.09 1.46 7.76 -51.92 -0.40 1.06 16 31 H 0.07 1.10 7.61 -51.93 -0.40 0.70 16 32 H 0.04 1.07 8.11 -51.93 -0.42 0.65 16 33 H 0.06 1.45 6.82 -51.93 -0.35 1.10 16 34 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 35 H 0.16 2.38 8.09 -51.92 -0.42 1.96 16 36 H 0.14 1.76 8.08 -51.92 -0.42 1.34 16 37 H 0.14 1.75 8.06 -52.49 -0.42 1.33 16 38 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 39 H 0.14 1.10 7.61 -52.49 -0.40 0.70 16 40 H 0.41 1.46 9.11 45.56 0.42 1.87 16 41 H 0.14 1.99 7.65 -52.49 -0.40 1.59 16 LS Contribution 376.81 15.07 5.68 5.68 Total: -1.00 -33.74 376.81 -9.29 -43.03 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -4.45 Total: 6.48 kcal Atomic # 6 Polarization: -18.10 SS G_CDS: -2.58 Total: -20.68 kcal Atomic # 7 Polarization: -44.05 SS G_CDS: 0.42 Total: -43.63 kcal Atomic # 8 Polarization: -51.77 SS G_CDS: -2.77 Total: -54.54 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.02 Total: 14.88 kcal Atomic # 16 Polarization: 49.36 SS G_CDS: -0.58 Total: 48.78 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.74 -9.29 -43.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588826545.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.110 kcal (2) G-P(sol) polarization free energy of solvation -33.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds