Wall clock time and date at job start Tue Mar 31 2020 23:07:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50698 * 120.00447 * 2 1 4 4 N 1.46504 * 109.47200 * 125.00064 * 3 2 1 5 5 C 1.46501 * 119.99924 * 274.99929 * 4 3 2 6 6 C 1.50701 * 109.47012 * 275.00249 * 5 4 3 7 7 H 1.07997 * 120.00296 * 0.02562 * 6 5 4 8 8 C 1.37879 * 119.99621 * 179.97438 * 6 5 4 9 9 N 1.31509 * 120.00016 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 120.00000 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47207 * 90.00068 * 10 8 6 12 12 H 1.48499 * 109.47241 * 210.00608 * 10 8 6 13 13 H 1.48505 * 109.47152 * 330.00527 * 10 8 6 14 14 S 1.65597 * 119.99894 * 95.00494 * 4 3 2 15 15 O 1.42098 * 104.27600 * 333.92398 * 14 4 3 16 16 O 1.42099 * 104.27442 * 206.06954 * 14 4 3 17 17 C 1.81397 * 104.45217 * 89.99703 * 14 4 3 18 18 C 1.50697 * 109.47183 * 179.97438 * 17 14 4 19 19 C 1.38395 * 119.92624 * 270.29479 * 18 17 14 20 20 C 1.38342 * 120.30516 * 180.25590 * 19 18 17 21 21 C 1.37974 * 120.14875 * 359.44610 * 20 19 18 22 22 C 1.39608 * 119.84372 * 0.27850 * 21 20 19 23 23 C 1.47731 * 120.14574 * 179.97438 * 22 21 20 24 24 O 1.21470 * 119.99879 * 179.97438 * 23 22 21 25 25 O 1.34713 * 119.99818 * 359.97438 * 23 22 21 26 26 C 1.37925 * 119.92592 * 90.00031 * 18 17 14 27 27 H 1.08001 * 120.00278 * 180.02562 * 1 2 3 28 28 H 1.08001 * 119.99830 * 359.97438 * 1 2 3 29 29 H 1.08003 * 120.00137 * 179.97438 * 2 1 3 30 30 H 1.09007 * 109.46840 * 4.99889 * 3 2 1 31 31 H 1.09006 * 109.47248 * 245.00489 * 3 2 1 32 32 H 1.08996 * 109.47112 * 35.00023 * 5 4 3 33 33 H 1.08997 * 109.46564 * 154.99978 * 5 4 3 34 34 H 0.97004 * 119.99816 * 179.97438 * 9 8 6 35 35 H 1.09001 * 109.46879 * 59.99997 * 17 14 4 36 36 H 1.09000 * 109.47095 * 300.00178 * 17 14 4 37 37 H 1.08000 * 119.84625 * 359.97438 * 19 18 17 38 38 H 1.08002 * 119.92904 * 179.72812 * 20 19 18 39 39 H 1.07999 * 120.07593 * 180.25535 * 21 20 19 40 40 H 0.96703 * 116.99394 * 179.97438 * 25 23 22 41 41 H 1.07997 * 120.07375 * 0.04541 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9939 1.3318 1.1314 5 6 2.5286 1.7620 2.4523 6 6 2.5993 3.2645 2.5449 7 1 2.9548 3.8413 1.7039 8 6 2.2091 3.9029 3.7031 9 7 1.7757 3.2006 4.7270 10 14 2.2974 5.7652 3.8182 11 1 1.0131 6.3511 3.3572 12 1 2.5455 6.1629 5.2273 13 1 3.4039 6.2623 2.9615 14 16 4.5713 0.8758 0.9172 15 8 4.5314 -0.0151 -0.1891 16 8 4.9848 0.4305 2.2018 17 6 5.4291 2.4099 0.4687 18 6 6.8913 2.1211 0.2458 19 6 7.7796 2.1991 1.3042 20 6 9.1243 1.9408 1.1074 21 6 9.5870 1.5922 -0.1448 22 6 8.6955 1.5060 -1.2157 23 6 9.1837 1.1339 -2.5594 24 8 8.4056 1.0593 -3.4892 25 8 10.4919 0.8772 -2.7535 26 6 7.3403 1.7737 -1.0112 27 1 -0.5400 -0.9353 0.0004 28 1 -0.5400 0.9353 0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.3586 2.1316 0.0896 31 1 2.6213 1.4025 -0.9315 32 1 1.4985 1.4371 2.5982 33 1 3.1614 1.3203 3.2220 34 1 1.5016 3.6497 5.5419 35 1 5.3212 3.1355 1.2749 36 1 4.9950 2.8150 -0.4454 37 1 7.4220 2.4674 2.2874 38 1 9.8129 2.0078 1.9368 39 1 10.6364 1.3868 -0.2962 40 1 10.7638 0.6374 -3.6500 41 1 6.6454 1.7093 -1.8354 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001588826545.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:11 Heat of formation + Delta-G solvation = -138.147003 kcal Electronic energy + Delta-G solvation = -27182.238256 eV Core-core repulsion = 23153.964992 eV Total energy + Delta-G solvation = -4028.273264 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.52876 -39.95644 -38.23113 -37.92221 -37.14101 -36.96087 -35.00036 -34.30287 -33.54266 -32.39718 -29.32938 -28.62980 -26.53227 -25.90398 -24.19963 -23.05930 -22.13279 -21.00539 -19.82660 -19.07531 -18.72017 -18.37024 -18.34749 -17.49450 -17.27534 -17.07573 -16.71336 -16.57072 -16.22378 -15.91023 -15.50287 -15.20655 -14.67980 -14.52000 -14.32245 -14.17923 -13.93763 -13.77640 -13.68496 -13.39673 -13.17952 -13.02977 -12.91894 -12.83950 -12.65207 -12.45960 -12.42088 -12.35670 -12.28138 -12.09310 -11.83515 -11.74895 -11.64093 -10.57229 -10.32143 -10.22438 -10.07438 -9.65666 -8.15650 -6.31221 -0.83900 -0.44132 0.21498 1.31403 1.41860 1.45980 1.46940 1.56490 1.87253 1.95885 2.43270 2.58968 2.84468 3.15870 3.17233 3.28615 3.70928 3.86375 3.91901 3.99516 4.05412 4.14955 4.15691 4.38925 4.42752 4.50562 4.72907 4.77585 4.85314 4.94211 5.07480 5.09825 5.22874 5.28650 5.33281 5.46500 5.51176 5.68438 5.70787 5.76179 5.80211 6.00276 6.10021 6.82151 6.91006 7.40047 8.92509 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.011973 B = 0.003788 C = 0.003173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2338.061738 B = 7390.264523 C = 8821.179059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.189 4.189 3 C 0.148 3.852 4 N -0.986 5.986 5 C 0.259 3.741 6 C -0.551 4.551 7 H 0.079 0.921 8 C 0.013 3.987 9 N -0.927 5.927 10 Si 0.959 3.041 11 H -0.275 1.275 12 H -0.288 1.288 13 H -0.257 1.257 14 S 2.603 3.397 15 O -0.982 6.982 16 O -0.989 6.989 17 C -0.571 4.571 18 C -0.115 4.115 19 C -0.081 4.081 20 C -0.122 4.122 21 C -0.043 4.043 22 C -0.146 4.146 23 C 0.536 3.464 24 O -0.547 6.547 25 O -0.497 6.497 26 C -0.059 4.059 27 H 0.112 0.888 28 H 0.106 0.894 29 H 0.098 0.902 30 H 0.090 0.910 31 H 0.097 0.903 32 H 0.018 0.982 33 H 0.022 0.978 34 H 0.266 0.734 35 H 0.159 0.841 36 H 0.164 0.836 37 H 0.145 0.855 38 H 0.175 0.825 39 H 0.174 0.826 40 H 0.436 0.564 41 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.437 -0.442 -11.687 18.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.209 4.209 3 C 0.023 3.977 4 N -0.823 5.823 5 C 0.136 3.864 6 C -0.590 4.590 7 H 0.097 0.903 8 C -0.187 4.187 9 N -0.566 5.566 10 Si 0.784 3.216 11 H -0.200 1.200 12 H -0.213 1.213 13 H -0.181 1.181 14 S 2.700 3.300 15 O -0.973 6.973 16 O -0.980 6.980 17 C -0.700 4.700 18 C -0.117 4.117 19 C -0.101 4.101 20 C -0.140 4.140 21 C -0.062 4.062 22 C -0.147 4.147 23 C 0.382 3.618 24 O -0.439 6.439 25 O -0.311 6.311 26 C -0.078 4.078 27 H 0.131 0.869 28 H 0.125 0.875 29 H 0.116 0.884 30 H 0.109 0.891 31 H 0.115 0.885 32 H 0.036 0.964 33 H 0.040 0.960 34 H 0.075 0.925 35 H 0.177 0.823 36 H 0.182 0.818 37 H 0.163 0.837 38 H 0.192 0.808 39 H 0.192 0.808 40 H 0.298 0.702 41 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 14.346 -1.234 -11.255 18.276 hybrid contribution -0.472 1.190 -0.235 1.301 sum 13.874 -0.045 -11.491 18.015 Atomic orbital electron populations 1.24020 0.95194 1.02936 0.98621 1.23416 0.97089 0.98834 1.01538 1.20453 0.93291 0.96116 0.87838 1.57310 1.25014 1.82959 1.16990 1.18760 0.95290 0.94324 0.78024 1.21934 1.44510 0.92440 1.00161 0.90273 1.25832 0.94555 1.03149 0.95199 1.70078 1.44058 1.37686 1.04817 0.85541 0.79042 0.79637 0.77406 1.20041 1.21336 1.18087 1.05038 0.74047 0.77589 0.73323 1.93514 1.86335 1.61979 1.55427 1.93508 1.82484 1.80513 1.41473 1.29586 1.03046 1.22385 1.15027 1.19057 0.93061 1.04974 0.94651 1.21900 0.94388 0.94652 0.99115 1.21625 0.94998 0.98803 0.98567 1.21918 1.01070 0.92344 0.90839 1.19152 0.94171 1.09235 0.92176 1.20755 0.80515 0.72289 0.88289 1.90899 1.57769 1.50433 1.44813 1.84485 1.24586 1.80539 1.41473 1.21306 0.95270 0.94404 0.96845 0.86934 0.87549 0.88420 0.89138 0.88541 0.96388 0.95998 0.92527 0.82349 0.81826 0.83697 0.80788 0.80819 0.70185 0.84402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.88 14.32 67.78 0.97 -3.91 16 2 C -0.19 -6.35 9.84 25.65 0.25 -6.10 16 3 C 0.15 5.09 5.69 85.63 0.49 5.58 16 4 N -0.99 -40.27 2.68 -523.89 -1.41 -41.67 16 5 C 0.26 12.94 5.41 85.63 0.46 13.40 16 6 C -0.55 -27.66 9.38 25.60 0.24 -27.42 16 7 H 0.08 3.61 7.81 -2.91 -0.02 3.59 16 8 C 0.01 0.66 5.46 84.66 0.46 1.12 16 9 N -0.93 -52.71 13.29 21.45 0.28 -52.43 16 10 Si 0.96 40.38 29.54 68.60 2.03 42.40 16 11 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 12 H -0.29 -12.17 7.11 99.48 0.71 -11.46 16 13 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 14 S 2.60 101.07 5.35 -56.49 -0.30 100.77 16 15 O -0.98 -39.75 16.99 -127.65 -2.17 -41.92 16 16 O -0.99 -45.74 16.53 -127.65 -2.11 -47.85 16 17 C -0.57 -17.06 6.30 71.23 0.45 -16.61 16 18 C -0.12 -3.24 5.13 -19.90 -0.10 -3.34 16 19 C -0.08 -2.00 9.69 22.33 0.22 -1.78 16 20 C -0.12 -2.19 10.03 22.23 0.22 -1.97 16 21 C -0.04 -0.75 9.62 22.54 0.22 -0.54 16 22 C -0.15 -3.38 5.87 -20.10 -0.12 -3.50 16 23 C 0.54 11.83 8.27 70.33 0.58 12.41 16 24 O -0.55 -15.84 17.13 19.93 0.34 -15.50 16 25 O -0.50 -6.47 12.68 -56.23 -0.71 -7.19 16 26 C -0.06 -1.60 9.24 22.54 0.21 -1.39 16 27 H 0.11 2.75 8.06 -2.91 -0.02 2.73 16 28 H 0.11 2.86 7.84 -2.91 -0.02 2.84 16 29 H 0.10 3.44 8.06 -2.91 -0.02 3.42 16 30 H 0.09 3.01 7.76 -2.38 -0.02 2.99 16 31 H 0.10 2.81 7.61 -2.38 -0.02 2.79 16 32 H 0.02 0.97 8.11 -2.39 -0.02 0.95 16 33 H 0.02 1.23 6.82 -2.39 -0.02 1.21 16 34 H 0.27 14.29 8.31 -92.71 -0.77 13.52 16 35 H 0.16 4.71 8.09 -2.39 -0.02 4.69 16 36 H 0.16 3.96 8.08 -2.39 -0.02 3.94 16 37 H 0.15 3.42 8.06 -2.91 -0.02 3.40 16 38 H 0.17 1.84 8.06 -2.91 -0.02 1.82 16 39 H 0.17 1.85 7.61 -2.91 -0.02 1.83 16 40 H 0.44 1.70 9.11 -74.05 -0.67 1.03 16 41 H 0.14 3.82 7.65 -2.91 -0.02 3.80 16 Total: -1.00 -75.22 376.81 0.89 -74.33 By element: Atomic # 1 Polarization: 22.72 SS G_CDS: 0.38 Total: 23.10 kcal Atomic # 6 Polarization: -38.59 SS G_CDS: 4.55 Total: -34.04 kcal Atomic # 7 Polarization: -92.98 SS G_CDS: -1.12 Total: -94.10 kcal Atomic # 8 Polarization: -107.81 SS G_CDS: -4.65 Total: -112.46 kcal Atomic # 14 Polarization: 40.38 SS G_CDS: 2.03 Total: 42.40 kcal Atomic # 16 Polarization: 101.07 SS G_CDS: -0.30 Total: 100.77 kcal Total: -75.22 0.89 -74.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588826545.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.812 kcal (2) G-P(sol) polarization free energy of solvation -75.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds