Wall clock time and date at job start Tue Mar 31 2020 23:04:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.33088 * 119.99814 * 2 1 4 4 C 1.50708 * 119.99943 * 187.93406 * 3 2 1 5 5 N 1.46493 * 109.46788 * 152.75519 * 4 3 2 6 6 S 1.65602 * 119.99492 * 164.99876 * 5 4 3 7 7 O 1.42095 * 104.28045 * 308.93057 * 6 5 4 8 8 O 1.42104 * 104.27913 * 181.07119 * 6 5 4 9 9 C 1.81401 * 104.44982 * 65.00492 * 6 5 4 10 10 C 1.50702 * 109.47460 * 180.02562 * 9 6 5 11 11 C 1.38640 * 119.74497 * 269.72756 * 10 9 6 12 12 C 1.37617 * 120.24292 * 179.72089 * 11 10 9 13 13 C 1.40714 * 119.74708 * 0.56614 * 12 11 10 14 14 C 1.41391 * 120.24375 * 179.68348 * 13 12 11 15 15 H 1.08003 * 120.00021 * 211.32804 * 14 13 12 16 16 C 1.39949 * 120.00101 * 31.33050 * 14 13 12 17 17 N 1.30827 * 119.99895 * 13.11379 * 16 14 13 18 18 Si 1.86801 * 120.00258 * 193.10636 * 16 14 13 19 19 H 1.48498 * 109.47000 * 60.00013 * 18 16 14 20 20 H 1.48495 * 109.47263 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47130 * 300.00397 * 18 16 14 22 22 C 1.40715 * 119.51211 * 359.70303 * 13 12 11 23 23 C 1.37620 * 119.74304 * 0.02562 * 22 13 12 24 24 C 1.46953 * 120.00131 * 180.02562 * 2 1 3 25 25 O 1.21537 * 120.00024 * 187.38783 * 24 2 1 26 26 O 1.34795 * 120.00016 * 7.38219 * 24 2 1 27 27 H 1.09006 * 109.47159 * 89.99499 * 1 2 3 28 28 H 1.08998 * 109.46843 * 209.99712 * 1 2 3 29 29 H 1.09002 * 109.47185 * 329.99634 * 1 2 3 30 30 H 1.07991 * 120.00145 * 7.94227 * 3 2 1 31 31 H 1.09002 * 109.46977 * 32.75304 * 4 3 2 32 32 H 1.08996 * 109.46702 * 272.75609 * 4 3 2 33 33 H 0.96997 * 120.00569 * 345.00012 * 5 4 3 34 34 H 1.09001 * 109.47674 * 59.99303 * 9 6 5 35 35 H 1.09004 * 109.46877 * 299.99297 * 9 6 5 36 36 H 1.08002 * 119.87383 * 359.97238 * 11 10 9 37 37 H 1.08004 * 120.12083 * 180.27548 * 12 11 10 38 38 H 0.96995 * 119.99939 * 180.02562 * 17 16 14 39 39 H 1.07994 * 120.12596 * 179.97438 * 22 13 12 40 40 H 1.08000 * 119.87465 * 179.97438 * 23 22 13 41 41 H 0.96698 * 116.99830 * 180.02562 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1724 1.1526 0.0000 4 6 3.6686 1.1589 -0.1802 5 7 4.0828 2.4296 -0.7800 6 16 5.6774 2.8758 -0.7555 7 8 6.0610 2.7310 0.6050 8 8 5.6954 4.1469 -1.3905 9 6 6.5099 1.6373 -1.7869 10 6 7.9853 1.9392 -1.8422 11 6 8.4822 2.7617 -2.8416 12 6 9.8269 3.0488 -2.8984 13 6 10.7000 2.4945 -1.9442 14 6 12.0844 2.7772 -1.9967 15 1 12.7990 2.0410 -1.6592 16 6 12.5287 4.0108 -2.4858 17 7 11.6801 4.9924 -2.6524 18 14 14.3335 4.2560 -2.9005 19 1 14.7359 3.2874 -3.9517 20 1 14.5441 5.6401 -3.3954 21 1 15.1555 4.0354 -1.6835 22 6 10.1853 1.6566 -0.9377 23 6 8.8363 1.3877 -0.8969 24 6 2.2418 -1.2726 -0.0006 25 8 3.4496 -1.2770 0.1348 26 8 1.5762 -2.4351 -0.1511 27 1 -0.3634 0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3634 0.8900 0.5139 30 1 1.6402 2.0833 0.1292 31 1 3.9593 0.3365 -0.8339 32 1 4.1518 1.0403 0.7896 33 1 3.4232 3.0095 -1.1915 34 1 6.0949 1.6651 -2.7944 35 1 6.3581 0.6465 -1.3586 36 1 7.8108 3.1818 -3.5759 37 1 10.2111 3.6933 -3.6752 38 1 11.9879 5.8473 -2.9918 39 1 10.8466 1.2256 -0.2006 40 1 8.4390 0.7445 -0.1256 41 1 2.1025 -3.2463 -0.1446 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001588982685.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:13 Heat of formation + Delta-G solvation = -160.820975 kcal Electronic energy + Delta-G solvation = -26254.471400 eV Core-core repulsion = 22225.214919 eV Total energy + Delta-G solvation = -4029.256481 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.33704 -39.61795 -38.19756 -37.75245 -36.98089 -36.68284 -35.90996 -34.86094 -33.22731 -31.32911 -29.56475 -29.44500 -26.00161 -25.89691 -24.41674 -23.04396 -22.20897 -20.90244 -20.10221 -19.28296 -18.90197 -18.66101 -17.81444 -17.41172 -17.18550 -16.87503 -16.43307 -16.04506 -15.82668 -15.68275 -15.44149 -15.16053 -14.65385 -14.35994 -14.13427 -13.92814 -13.89299 -13.76214 -13.54366 -13.48392 -13.16415 -13.13924 -13.07058 -13.02610 -12.81437 -12.78135 -12.53003 -12.37559 -12.23038 -11.95086 -11.58136 -11.44207 -11.37485 -11.07636 -10.70601 -10.06503 -9.49846 -9.23604 -8.67617 -6.43256 -0.78405 0.05213 0.86363 1.02705 1.37733 1.49298 1.51394 1.74914 1.95363 2.19318 2.20024 2.64850 2.85417 3.22150 3.59315 3.60901 3.74289 3.98502 4.08684 4.14869 4.33608 4.41192 4.48063 4.49054 4.66675 4.71133 4.79734 4.90662 4.96180 5.09201 5.14509 5.20843 5.22568 5.31637 5.50954 5.60360 5.62339 5.79625 5.98860 6.01325 6.11819 6.27272 6.58862 6.85195 6.90699 6.98385 8.31037 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.026596 B = 0.002332 C = 0.002217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.541518 B =12005.264286 C =12624.659200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.164 4.164 3 C -0.056 4.056 4 C 0.122 3.878 5 N -1.111 6.111 6 S 2.603 3.397 7 O -0.997 6.997 8 O -0.995 6.995 9 C -0.526 4.526 10 C -0.225 4.225 11 C -0.093 4.093 12 C -0.183 4.183 13 C 0.087 3.913 14 C -0.496 4.496 15 H 0.082 0.918 16 C 0.030 3.970 17 N -0.829 5.829 18 Si 0.989 3.011 19 H -0.257 1.257 20 H -0.268 1.268 21 H -0.259 1.259 22 C -0.238 4.238 23 C -0.081 4.081 24 C 0.508 3.492 25 O -0.542 6.542 26 O -0.507 6.507 27 H 0.085 0.915 28 H 0.073 0.927 29 H 0.088 0.912 30 H 0.174 0.826 31 H 0.098 0.902 32 H 0.088 0.912 33 H 0.427 0.573 34 H 0.156 0.844 35 H 0.150 0.850 36 H 0.118 0.882 37 H 0.103 0.897 38 H 0.290 0.710 39 H 0.107 0.893 40 H 0.123 0.877 41 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.849 -10.159 1.428 25.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.166 4.166 3 C -0.076 4.076 4 C -0.002 4.002 5 N -0.873 5.873 6 S 2.702 3.298 7 O -0.987 6.987 8 O -0.985 6.985 9 C -0.657 4.657 10 C -0.229 4.229 11 C -0.113 4.113 12 C -0.203 4.203 13 C 0.085 3.915 14 C -0.525 4.525 15 H 0.101 0.899 16 C -0.184 4.184 17 N -0.455 5.455 18 Si 0.809 3.191 19 H -0.181 1.181 20 H -0.193 1.193 21 H -0.183 1.183 22 C -0.257 4.257 23 C -0.100 4.100 24 C 0.356 3.644 25 O -0.435 6.435 26 O -0.320 6.320 27 H 0.103 0.897 28 H 0.092 0.908 29 H 0.107 0.893 30 H 0.191 0.809 31 H 0.116 0.884 32 H 0.106 0.894 33 H 0.264 0.736 34 H 0.174 0.826 35 H 0.168 0.832 36 H 0.136 0.864 37 H 0.121 0.879 38 H 0.101 0.899 39 H 0.125 0.875 40 H 0.141 0.859 41 H 0.291 0.709 Dipole moment (debyes) X Y Z Total from point charges -22.403 -8.938 1.986 24.202 hybrid contribution 1.138 -0.530 -0.587 1.386 sum -21.265 -9.468 1.399 23.320 Atomic orbital electron populations 1.20772 0.87166 1.04313 1.03877 1.20972 0.98486 0.88584 1.08551 1.23957 0.94085 0.99033 0.90526 1.20954 0.94841 0.84559 0.99854 1.55458 1.26173 1.31492 1.74185 1.05258 0.73743 0.75682 0.75161 1.93495 1.82848 1.87370 1.34952 1.93516 1.86064 1.40437 1.78506 1.29016 1.02938 1.17134 1.16623 1.18557 0.92221 1.09352 1.02765 1.20953 0.95396 0.97174 0.97742 1.21264 0.93360 1.04815 1.00844 1.18092 0.94338 0.89660 0.89459 1.19887 0.92618 1.01133 1.38875 0.89949 1.26868 1.05117 0.94514 0.91944 1.69860 1.39179 1.03318 1.33130 0.85145 0.75797 0.78368 0.79744 1.18134 1.19257 1.18323 1.21298 0.95207 1.08194 1.01044 1.20886 0.93446 0.98265 0.97422 1.21518 0.85119 0.85818 0.71984 1.90923 1.16971 1.88246 1.47376 1.84564 1.45578 1.17638 1.84224 0.89658 0.90834 0.89349 0.80862 0.88408 0.89426 0.73648 0.82576 0.83176 0.86415 0.87929 0.89910 0.87530 0.85883 0.70941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.70 9.81 71.23 0.70 0.00 16 2 C -0.16 -2.02 5.99 -18.74 -0.11 -2.13 16 3 C -0.06 -0.72 9.34 24.53 0.23 -0.49 16 4 C 0.12 2.44 4.95 85.64 0.42 2.86 16 5 N -1.11 -23.88 5.88 -190.79 -1.12 -25.00 16 6 S 2.60 86.65 5.44 -56.49 -0.31 86.34 16 7 O -1.00 -40.58 17.50 -127.65 -2.23 -42.81 16 8 O -1.00 -40.07 18.08 -127.65 -2.31 -42.38 16 9 C -0.53 -16.43 6.19 71.24 0.44 -15.99 16 10 C -0.23 -9.73 5.16 -19.67 -0.10 -9.83 16 11 C -0.09 -4.43 9.67 22.22 0.21 -4.22 16 12 C -0.18 -9.93 8.65 22.73 0.20 -9.73 16 13 C 0.09 4.86 5.50 -21.29 -0.12 4.74 16 14 C -0.50 -27.13 9.04 23.46 0.21 -26.92 16 15 H 0.08 4.28 7.88 -2.91 -0.02 4.26 16 16 C 0.03 1.56 5.19 85.26 0.44 2.00 16 17 N -0.83 -44.82 11.16 21.83 0.24 -44.58 16 18 Si 0.99 38.70 29.58 68.60 2.03 40.73 16 19 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 20 H -0.27 -9.96 7.11 99.48 0.71 -9.25 16 21 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 22 C -0.24 -12.11 9.80 22.73 0.22 -11.89 16 23 C -0.08 -3.69 9.67 22.22 0.21 -3.48 16 24 C 0.51 8.18 8.06 70.11 0.56 8.74 16 25 O -0.54 -12.27 14.13 19.71 0.28 -12.00 16 26 O -0.51 -5.39 12.79 -57.06 -0.73 -6.12 16 27 H 0.08 0.44 8.14 -2.38 -0.02 0.42 16 28 H 0.07 0.51 7.79 -2.39 -0.02 0.49 16 29 H 0.09 0.32 8.06 -2.39 -0.02 0.30 16 30 H 0.17 1.18 8.04 -2.92 -0.02 1.16 16 31 H 0.10 1.95 6.03 -2.39 -0.01 1.94 16 32 H 0.09 2.09 7.65 -2.39 -0.02 2.07 16 33 H 0.43 6.75 8.61 -96.75 -0.83 5.92 16 34 H 0.16 3.86 8.08 -2.39 -0.02 3.84 16 35 H 0.15 3.90 8.08 -2.39 -0.02 3.88 16 36 H 0.12 4.92 8.06 -2.91 -0.02 4.90 16 37 H 0.10 5.74 6.52 -2.91 -0.02 5.72 16 38 H 0.29 14.21 8.30 -92.71 -0.77 13.44 16 39 H 0.11 5.08 8.06 -2.91 -0.02 5.05 16 40 H 0.12 4.85 8.06 -2.91 -0.02 4.83 16 41 H 0.43 1.35 9.11 -74.06 -0.67 0.67 16 Total: -1.00 -79.56 369.32 -1.04 -80.60 By element: Atomic # 1 Polarization: 31.96 SS G_CDS: -0.42 Total: 31.54 kcal Atomic # 6 Polarization: -69.86 SS G_CDS: 3.53 Total: -66.33 kcal Atomic # 7 Polarization: -68.70 SS G_CDS: -0.88 Total: -69.58 kcal Atomic # 8 Polarization: -98.31 SS G_CDS: -4.99 Total: -103.30 kcal Atomic # 14 Polarization: 38.70 SS G_CDS: 2.03 Total: 40.73 kcal Atomic # 16 Polarization: 86.65 SS G_CDS: -0.31 Total: 86.34 kcal Total: -79.56 -1.04 -80.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588982685.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.225 kcal (2) G-P(sol) polarization free energy of solvation -79.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds