Wall clock time and date at job start Tue Mar 31 2020 23:04:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33077 * 120.00225 * 2 1 4 4 C 1.50705 * 120.00185 * 356.30449 * 3 2 1 5 5 N 1.46497 * 109.47145 * 123.83252 * 4 3 2 6 6 S 1.65604 * 120.00020 * 165.00072 * 5 4 3 7 7 O 1.42102 * 104.27472 * 308.93442 * 6 5 4 8 8 O 1.42103 * 104.27707 * 181.07736 * 6 5 4 9 9 C 1.81403 * 104.44638 * 65.00346 * 6 5 4 10 10 C 1.50701 * 109.47057 * 179.97438 * 9 6 5 11 11 C 1.38630 * 119.75202 * 269.73129 * 10 9 6 12 12 C 1.37619 * 120.25066 * 179.71870 * 11 10 9 13 13 C 1.40722 * 119.74224 * 0.57372 * 12 11 10 14 14 C 1.41388 * 120.24140 * 179.68082 * 13 12 11 15 15 H 1.08005 * 119.99413 * 205.17497 * 14 13 12 16 16 C 1.39941 * 120.00465 * 25.18044 * 14 13 12 17 17 N 1.30824 * 119.99929 * 14.91561 * 16 14 13 18 18 Si 1.86801 * 119.99993 * 194.91851 * 16 14 13 19 19 H 1.48505 * 109.47177 * 89.99830 * 18 16 14 20 20 H 1.48499 * 109.46955 * 209.99609 * 18 16 14 21 21 H 1.48501 * 109.47291 * 329.99866 * 18 16 14 22 22 C 1.40712 * 119.51015 * 359.69959 * 13 12 11 23 23 C 1.37627 * 119.74832 * 0.02562 * 22 13 12 24 24 C 1.46948 * 119.99732 * 180.02562 * 2 1 3 25 25 O 1.21540 * 120.00131 * 179.97438 * 24 2 1 26 26 O 1.34800 * 120.00287 * 0.02562 * 24 2 1 27 27 H 1.09006 * 109.47221 * 64.43765 * 1 2 3 28 28 H 1.08998 * 109.47319 * 184.44295 * 1 2 3 29 29 H 1.09005 * 109.46965 * 304.44280 * 1 2 3 30 30 H 1.08002 * 120.00216 * 176.30703 * 3 2 1 31 31 H 1.09000 * 109.46722 * 3.84228 * 4 3 2 32 32 H 1.08994 * 109.47316 * 243.83813 * 4 3 2 33 33 H 0.97002 * 120.00148 * 345.00714 * 5 4 3 34 34 H 1.09004 * 109.46996 * 60.00526 * 9 6 5 35 35 H 1.08997 * 109.47303 * 300.00399 * 9 6 5 36 36 H 1.08008 * 119.87796 * 359.97438 * 11 10 9 37 37 H 1.08000 * 120.13170 * 180.27668 * 12 11 10 38 38 H 0.96999 * 120.00011 * 179.97438 * 17 16 14 39 39 H 1.08002 * 120.13226 * 179.97438 * 22 13 12 40 40 H 1.07997 * 119.87612 * 179.97438 * 23 22 13 41 41 H 0.96699 * 117.00344 * 180.02562 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1724 1.1525 0.0000 4 6 1.4213 2.4563 -0.0841 5 7 1.7792 3.3006 1.0583 6 16 1.4078 4.9144 1.0438 7 8 1.9194 5.3805 -0.1973 8 8 1.9188 5.4027 2.2766 9 6 -0.4056 4.9615 1.0429 10 6 -0.8708 6.3948 1.0306 11 6 -1.0889 7.0576 2.2285 12 6 -1.5083 8.3684 2.2293 13 6 -1.7273 9.0320 1.0078 14 6 -2.1647 10.3765 0.9963 15 1 -2.7100 10.7596 0.1464 16 6 -1.8911 11.2107 2.0860 17 7 -0.9975 10.8560 2.9732 18 14 -2.8018 12.8308 2.2738 19 1 -4.0381 12.6146 3.0676 20 1 -1.9306 13.8104 2.9715 21 1 -3.1607 13.3554 0.9317 22 6 -1.5082 8.3475 -0.2019 23 6 -1.0834 7.0386 -0.1787 24 6 2.2417 -1.2726 -0.0006 25 8 3.4570 -1.2727 -0.0010 26 8 1.5677 -2.4400 -0.0016 27 1 -0.3634 0.4435 -0.9271 28 1 -0.3634 -1.0245 0.0796 29 1 -0.3633 0.5813 0.8476 30 1 3.2507 1.1534 0.0602 31 1 0.3493 2.2596 -0.0687 32 1 1.6837 2.9677 -1.0102 33 1 2.2338 2.9144 1.8233 34 1 -0.7823 4.4653 1.9374 35 1 -0.7819 4.4493 0.1575 36 1 -0.9251 6.5447 3.1648 37 1 -1.6733 8.8842 3.1636 38 1 -0.8075 11.4344 3.7283 39 1 -1.6736 8.8469 -1.1451 40 1 -0.9149 6.5112 -1.1059 41 1 2.0943 -3.2511 -0.0016 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001588982686.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:17 Heat of formation + Delta-G solvation = -138.464189 kcal Electronic energy + Delta-G solvation = -25937.979456 eV Core-core repulsion = 21909.692438 eV Total energy + Delta-G solvation = -4028.287018 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.59880 -37.81071 -37.32304 -36.62759 -36.36462 -35.48764 -34.19116 -33.83307 -31.53336 -29.46370 -28.36492 -27.86241 -26.39365 -24.27282 -23.38111 -21.19615 -20.46239 -19.48891 -18.98068 -18.25436 -17.46688 -17.38268 -17.23684 -16.30330 -16.01205 -15.85592 -15.47710 -14.88035 -14.70943 -14.44783 -13.95462 -13.87239 -13.71665 -13.60043 -13.16337 -12.68978 -12.54276 -12.21183 -12.10596 -12.05835 -11.99538 -11.91004 -11.69421 -11.64200 -11.57029 -11.37517 -11.18108 -11.04852 -10.94899 -10.62355 -10.37431 -9.94960 -9.82117 -9.54801 -9.46592 -9.24892 -7.64127 -7.46293 -6.90633 -4.52243 0.41055 0.72753 2.46079 2.59313 2.61802 2.93381 2.99997 3.03467 3.08350 3.09605 3.81457 4.14375 4.32392 4.41900 4.48267 4.51332 4.71669 4.85091 5.01824 5.22699 5.24447 5.28229 5.35486 5.51723 5.52234 5.64044 5.85284 5.98332 5.99947 6.05584 6.16348 6.23632 6.81409 6.88628 6.90604 7.07706 7.17207 7.43807 7.46295 7.63809 7.87238 7.89193 8.11104 8.46532 8.70792 8.78120 10.01760 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.033662 B = 0.002076 C = 0.002039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.591234 B =13482.610784 C =13731.663250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.154 4.154 3 C -0.060 4.060 4 C 0.134 3.866 5 N -1.128 6.128 6 S 2.573 3.427 7 O -0.961 6.961 8 O -0.958 6.958 9 C -0.518 4.518 10 C -0.238 4.238 11 C -0.082 4.082 12 C -0.165 4.165 13 C 0.116 3.884 14 C -0.446 4.446 15 H 0.083 0.917 16 C 0.071 3.929 17 N -0.781 5.781 18 Si 0.915 3.085 19 H -0.266 1.266 20 H -0.276 1.276 21 H -0.261 1.261 22 C -0.224 4.224 23 C -0.068 4.068 24 C 0.521 3.479 25 O -0.517 6.517 26 O -0.511 6.511 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.138 0.862 31 H 0.081 0.919 32 H 0.103 0.897 33 H 0.414 0.586 34 H 0.123 0.877 35 H 0.120 0.880 36 H 0.095 0.905 37 H 0.126 0.874 38 H 0.285 0.715 39 H 0.099 0.901 40 H 0.096 0.904 41 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.432 -19.715 -3.162 19.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.157 4.157 3 C -0.080 4.080 4 C 0.008 3.992 5 N -0.884 5.884 6 S 2.673 3.327 7 O -0.951 6.951 8 O -0.948 6.948 9 C -0.649 4.649 10 C -0.243 4.243 11 C -0.101 4.101 12 C -0.185 4.185 13 C 0.113 3.887 14 C -0.476 4.476 15 H 0.101 0.899 16 C -0.149 4.149 17 N -0.406 5.406 18 Si 0.739 3.261 19 H -0.191 1.191 20 H -0.201 1.201 21 H -0.184 1.184 22 C -0.244 4.244 23 C -0.088 4.088 24 C 0.366 3.634 25 O -0.407 6.407 26 O -0.323 6.323 27 H 0.096 0.904 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.155 0.845 31 H 0.099 0.901 32 H 0.121 0.879 33 H 0.247 0.753 34 H 0.141 0.859 35 H 0.138 0.862 36 H 0.113 0.887 37 H 0.143 0.857 38 H 0.096 0.904 39 H 0.117 0.883 40 H 0.114 0.886 41 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges 1.276 -18.571 -3.126 18.875 hybrid contribution -0.173 -0.463 0.487 0.694 sum 1.103 -19.033 -2.640 19.247 Atomic orbital electron populations 1.20877 0.89573 1.04249 1.03135 1.20727 0.97211 0.89518 1.08232 1.23815 1.01455 0.92552 0.90178 1.20516 0.98970 0.88920 0.90793 1.56014 1.76032 1.29492 1.26899 1.06839 0.79381 0.71968 0.74480 1.93529 1.77793 1.78321 1.45466 1.93562 1.78537 1.77300 1.45406 1.28915 1.22231 1.03863 1.09859 1.18096 1.20002 0.91506 0.94725 1.20628 0.98957 0.95421 0.95132 1.21395 1.05294 0.92735 0.99058 1.17760 0.87199 0.92756 0.91019 1.19754 1.30433 0.94901 1.02485 0.89916 1.26034 0.93534 1.00697 0.94612 1.69807 1.23297 1.37312 1.10137 0.86188 0.79935 0.80246 0.79691 1.19119 1.20101 1.18449 1.20995 1.10977 0.95154 0.97322 1.20465 0.98176 0.95059 0.95113 1.21038 0.85537 0.84772 0.72039 1.90934 1.15199 1.88225 1.46363 1.84590 1.44953 1.16970 1.85746 0.90442 0.90349 0.90300 0.84468 0.90114 0.87912 0.75288 0.85865 0.86211 0.88668 0.85669 0.90371 0.88302 0.88624 0.72849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.72 8.53 36.00 0.31 -0.41 16 2 C -0.15 -1.21 5.99 -102.89 -0.62 -1.83 16 3 C -0.06 -0.50 9.23 -36.10 -0.33 -0.83 16 4 C 0.13 1.16 6.41 -5.19 -0.03 1.13 16 5 N -1.13 -12.36 5.88 -11.66 -0.07 -12.43 16 6 S 2.57 41.61 5.44 -107.50 -0.59 41.02 16 7 O -0.96 -18.59 17.50 -57.54 -1.01 -19.60 16 8 O -0.96 -19.18 18.08 -57.54 -1.04 -20.22 16 9 C -0.52 -7.78 6.19 36.01 0.22 -7.56 16 10 C -0.24 -4.94 5.16 -104.33 -0.54 -5.48 16 11 C -0.08 -1.86 9.67 -39.66 -0.38 -2.24 16 12 C -0.17 -4.18 8.69 -38.87 -0.34 -4.52 16 13 C 0.12 3.00 5.58 -106.83 -0.60 2.40 16 14 C -0.45 -11.33 9.07 -37.75 -0.34 -11.67 16 15 H 0.08 1.99 7.89 -52.48 -0.41 1.58 16 16 C 0.07 1.71 5.20 -17.34 -0.09 1.62 16 17 N -0.78 -19.61 10.83 55.55 0.60 -19.01 16 18 Si 0.92 17.86 29.58 -169.99 -5.03 12.83 16 19 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 20 H -0.28 -5.30 7.11 56.52 0.40 -4.90 16 21 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 22 C -0.22 -5.33 9.80 -38.87 -0.38 -5.71 16 23 C -0.07 -1.48 9.67 -39.66 -0.38 -1.86 16 24 C 0.52 4.65 8.25 34.26 0.28 4.94 16 25 O -0.52 -6.23 17.01 -19.30 -0.33 -6.56 16 26 O -0.51 -3.14 12.41 -40.77 -0.51 -3.65 16 27 H 0.08 0.37 7.91 -51.93 -0.41 -0.04 16 28 H 0.08 0.44 7.17 -51.93 -0.37 0.07 16 29 H 0.08 0.42 7.65 -51.93 -0.40 0.02 16 30 H 0.14 1.23 7.50 -52.49 -0.39 0.84 16 31 H 0.08 0.51 5.85 -51.93 -0.30 0.20 16 32 H 0.10 0.92 7.69 -51.93 -0.40 0.52 16 33 H 0.41 3.92 8.61 -34.47 -0.30 3.62 16 34 H 0.12 1.54 8.08 -51.92 -0.42 1.12 16 35 H 0.12 1.40 8.08 -51.93 -0.42 0.98 16 36 H 0.10 1.95 8.06 -52.48 -0.42 1.52 16 37 H 0.13 3.24 6.10 -52.49 -0.32 2.92 16 38 H 0.29 6.47 8.30 -40.82 -0.34 6.13 16 39 H 0.10 2.18 8.06 -52.49 -0.42 1.76 16 40 H 0.10 1.78 8.06 -52.49 -0.42 1.36 16 41 H 0.41 0.81 9.11 45.56 0.42 1.23 16 LS Contribution 369.58 15.07 5.57 5.57 Total: -1.00 -34.73 369.58 -9.75 -44.48 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: -4.13 Total: 9.60 kcal Atomic # 6 Polarization: -28.81 SS G_CDS: -3.22 Total: -32.04 kcal Atomic # 7 Polarization: -31.97 SS G_CDS: 0.53 Total: -31.44 kcal Atomic # 8 Polarization: -47.15 SS G_CDS: -2.88 Total: -50.03 kcal Atomic # 14 Polarization: 17.86 SS G_CDS: -5.03 Total: 12.83 kcal Atomic # 16 Polarization: 41.61 SS G_CDS: -0.59 Total: 41.02 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.73 -9.75 -44.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588982686.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.980 kcal (2) G-P(sol) polarization free energy of solvation -34.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds