Wall clock time and date at job start Tue Mar 31 2020 23:04:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33077 * 120.00225 * 2 1 4 4 C 1.50705 * 120.00185 * 356.30449 * 3 2 1 5 5 N 1.46497 * 109.47145 * 123.83252 * 4 3 2 6 6 S 1.65604 * 120.00020 * 165.00072 * 5 4 3 7 7 O 1.42102 * 104.27472 * 308.93442 * 6 5 4 8 8 O 1.42103 * 104.27707 * 181.07736 * 6 5 4 9 9 C 1.81403 * 104.44638 * 65.00346 * 6 5 4 10 10 C 1.50701 * 109.47057 * 179.97438 * 9 6 5 11 11 C 1.38630 * 119.75202 * 269.73129 * 10 9 6 12 12 C 1.37619 * 120.25066 * 179.71870 * 11 10 9 13 13 C 1.40722 * 119.74224 * 0.57372 * 12 11 10 14 14 C 1.41388 * 120.24140 * 179.68082 * 13 12 11 15 15 H 1.08005 * 119.99413 * 205.17497 * 14 13 12 16 16 C 1.39941 * 120.00465 * 25.18044 * 14 13 12 17 17 N 1.30824 * 119.99929 * 14.91561 * 16 14 13 18 18 Si 1.86801 * 119.99993 * 194.91851 * 16 14 13 19 19 H 1.48505 * 109.47177 * 89.99830 * 18 16 14 20 20 H 1.48499 * 109.46955 * 209.99609 * 18 16 14 21 21 H 1.48501 * 109.47291 * 329.99866 * 18 16 14 22 22 C 1.40712 * 119.51015 * 359.69959 * 13 12 11 23 23 C 1.37627 * 119.74832 * 0.02562 * 22 13 12 24 24 C 1.46948 * 119.99732 * 180.02562 * 2 1 3 25 25 O 1.21540 * 120.00131 * 179.97438 * 24 2 1 26 26 O 1.34800 * 120.00287 * 0.02562 * 24 2 1 27 27 H 1.09006 * 109.47221 * 64.43765 * 1 2 3 28 28 H 1.08998 * 109.47319 * 184.44295 * 1 2 3 29 29 H 1.09005 * 109.46965 * 304.44280 * 1 2 3 30 30 H 1.08002 * 120.00216 * 176.30703 * 3 2 1 31 31 H 1.09000 * 109.46722 * 3.84228 * 4 3 2 32 32 H 1.08994 * 109.47316 * 243.83813 * 4 3 2 33 33 H 0.97002 * 120.00148 * 345.00714 * 5 4 3 34 34 H 1.09004 * 109.46996 * 60.00526 * 9 6 5 35 35 H 1.08997 * 109.47303 * 300.00399 * 9 6 5 36 36 H 1.08008 * 119.87796 * 359.97438 * 11 10 9 37 37 H 1.08000 * 120.13170 * 180.27668 * 12 11 10 38 38 H 0.96999 * 120.00011 * 179.97438 * 17 16 14 39 39 H 1.08002 * 120.13226 * 179.97438 * 22 13 12 40 40 H 1.07997 * 119.87612 * 179.97438 * 23 22 13 41 41 H 0.96699 * 117.00344 * 180.02562 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1724 1.1525 0.0000 4 6 1.4213 2.4563 -0.0841 5 7 1.7792 3.3006 1.0583 6 16 1.4078 4.9144 1.0438 7 8 1.9194 5.3805 -0.1973 8 8 1.9188 5.4027 2.2766 9 6 -0.4056 4.9615 1.0429 10 6 -0.8708 6.3948 1.0306 11 6 -1.0889 7.0576 2.2285 12 6 -1.5083 8.3684 2.2293 13 6 -1.7273 9.0320 1.0078 14 6 -2.1647 10.3765 0.9963 15 1 -2.7100 10.7596 0.1464 16 6 -1.8911 11.2107 2.0860 17 7 -0.9975 10.8560 2.9732 18 14 -2.8018 12.8308 2.2738 19 1 -4.0381 12.6146 3.0676 20 1 -1.9306 13.8104 2.9715 21 1 -3.1607 13.3554 0.9317 22 6 -1.5082 8.3475 -0.2019 23 6 -1.0834 7.0386 -0.1787 24 6 2.2417 -1.2726 -0.0006 25 8 3.4570 -1.2727 -0.0010 26 8 1.5677 -2.4400 -0.0016 27 1 -0.3634 0.4435 -0.9271 28 1 -0.3634 -1.0245 0.0796 29 1 -0.3633 0.5813 0.8476 30 1 3.2507 1.1534 0.0602 31 1 0.3493 2.2596 -0.0687 32 1 1.6837 2.9677 -1.0102 33 1 2.2338 2.9144 1.8233 34 1 -0.7823 4.4653 1.9374 35 1 -0.7819 4.4493 0.1575 36 1 -0.9251 6.5447 3.1648 37 1 -1.6733 8.8842 3.1636 38 1 -0.8075 11.4344 3.7283 39 1 -1.6736 8.8469 -1.1451 40 1 -0.9149 6.5112 -1.1059 41 1 2.0943 -3.2511 -0.0016 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001588982686.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:16 Heat of formation + Delta-G solvation = -164.323753 kcal Electronic energy + Delta-G solvation = -25939.100811 eV Core-core repulsion = 21909.692438 eV Total energy + Delta-G solvation = -4029.408373 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.25620 -39.55827 -38.20855 -37.81802 -37.05235 -36.90064 -35.92867 -34.60459 -33.18108 -31.24901 -29.51541 -28.96196 -27.00044 -25.96655 -24.05143 -22.98720 -22.14241 -20.44738 -19.93020 -19.27713 -18.89857 -18.50996 -17.93393 -17.50064 -17.16176 -17.07285 -16.69940 -16.00622 -15.89378 -15.64895 -15.50477 -15.38393 -14.41392 -14.37052 -14.22539 -13.87679 -13.77807 -13.66945 -13.50036 -13.12987 -13.08132 -13.02174 -12.98586 -12.86645 -12.76302 -12.71955 -12.62813 -12.58747 -12.18905 -11.91267 -11.64107 -11.53582 -11.31736 -11.05369 -10.67651 -10.17234 -9.44276 -9.23671 -8.67430 -6.40193 -0.77005 -0.02464 0.90306 1.09691 1.38556 1.51203 1.52708 1.75251 1.98110 2.14343 2.18977 2.65898 2.92807 3.29279 3.67004 3.69910 3.83748 3.87434 4.09263 4.16890 4.28470 4.41060 4.47662 4.55775 4.72218 4.77329 4.89247 4.94251 5.02594 5.04955 5.10512 5.25104 5.29121 5.37471 5.46099 5.60516 5.63849 5.86262 6.04281 6.06011 6.07912 6.31023 6.63575 6.87186 6.93008 6.95455 8.28084 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.033662 B = 0.002076 C = 0.002039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.591234 B =13482.610784 C =13731.663250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.148 4.148 3 C -0.066 4.066 4 C 0.126 3.874 5 N -1.112 6.112 6 S 2.595 3.405 7 O -0.996 6.996 8 O -1.002 7.002 9 C -0.518 4.518 10 C -0.230 4.230 11 C -0.094 4.094 12 C -0.194 4.194 13 C 0.082 3.918 14 C -0.488 4.488 15 H 0.082 0.918 16 C 0.029 3.971 17 N -0.822 5.822 18 Si 0.989 3.011 19 H -0.260 1.260 20 H -0.270 1.270 21 H -0.256 1.256 22 C -0.244 4.244 23 C -0.076 4.076 24 C 0.521 3.479 25 O -0.556 6.556 26 O -0.503 6.503 27 H 0.093 0.907 28 H 0.080 0.920 29 H 0.091 0.909 30 H 0.124 0.876 31 H 0.116 0.884 32 H 0.102 0.898 33 H 0.424 0.576 34 H 0.158 0.842 35 H 0.166 0.834 36 H 0.114 0.886 37 H 0.107 0.893 38 H 0.290 0.710 39 H 0.105 0.895 40 H 0.131 0.869 41 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.591 -22.207 -3.846 22.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.150 4.150 3 C -0.086 4.086 4 C 0.002 3.998 5 N -0.872 5.872 6 S 2.695 3.305 7 O -0.986 6.986 8 O -0.993 6.993 9 C -0.650 4.650 10 C -0.234 4.234 11 C -0.113 4.113 12 C -0.214 4.214 13 C 0.079 3.921 14 C -0.517 4.517 15 H 0.100 0.900 16 C -0.186 4.186 17 N -0.448 5.448 18 Si 0.809 3.191 19 H -0.184 1.184 20 H -0.194 1.194 21 H -0.180 1.180 22 C -0.264 4.264 23 C -0.095 4.095 24 C 0.368 3.632 25 O -0.450 6.450 26 O -0.316 6.316 27 H 0.112 0.888 28 H 0.099 0.901 29 H 0.110 0.890 30 H 0.142 0.858 31 H 0.134 0.866 32 H 0.120 0.880 33 H 0.259 0.741 34 H 0.176 0.824 35 H 0.184 0.816 36 H 0.132 0.868 37 H 0.125 0.875 38 H 0.101 0.899 39 H 0.123 0.877 40 H 0.149 0.851 41 H 0.292 0.708 Dipole moment (debyes) X Y Z Total from point charges 0.233 -21.069 -3.815 21.413 hybrid contribution 0.231 -0.111 0.627 0.677 sum 0.464 -21.180 -3.188 21.424 Atomic orbital electron populations 1.20996 0.87669 1.04969 1.04463 1.20919 0.98404 0.88763 1.06930 1.23636 1.00918 0.92694 0.91394 1.20827 1.01052 0.88320 0.89626 1.55437 1.75858 1.27781 1.28161 1.05574 0.79392 0.72702 0.72801 1.93498 1.78661 1.79767 1.46646 1.93515 1.79609 1.79050 1.47090 1.28973 1.21158 1.00765 1.14092 1.18559 1.17195 0.94161 0.93486 1.20972 0.98444 0.94778 0.97117 1.21406 1.07396 0.94177 0.98437 1.18122 0.88377 0.93592 0.92015 1.19976 1.32409 0.95620 1.03705 0.89976 1.26897 0.93788 1.04126 0.93802 1.69874 1.24844 1.39030 1.11027 0.85095 0.78592 0.75660 0.79715 1.18415 1.19420 1.17984 1.21255 1.11591 0.96547 0.97000 1.20913 0.97101 0.94465 0.97063 1.21301 0.85061 0.85790 0.71061 1.90926 1.16899 1.88833 1.48297 1.84554 1.44912 1.17223 1.84905 0.88838 0.90119 0.89017 0.85763 0.86624 0.87964 0.74078 0.82365 0.81576 0.86752 0.87469 0.89882 0.87666 0.85125 0.70759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.92 8.53 71.24 0.61 -0.31 16 2 C -0.15 -1.88 5.99 -18.74 -0.11 -1.99 16 3 C -0.07 -0.93 9.23 24.53 0.23 -0.70 16 4 C 0.13 1.70 6.41 85.64 0.55 2.25 16 5 N -1.11 -20.70 5.88 -190.79 -1.12 -21.83 16 6 S 2.60 77.10 5.44 -56.49 -0.31 76.79 16 7 O -1.00 -36.52 17.50 -127.65 -2.23 -38.76 16 8 O -1.00 -38.93 18.08 -127.65 -2.31 -41.24 16 9 C -0.52 -13.23 6.19 71.24 0.44 -12.79 16 10 C -0.23 -9.04 5.16 -19.68 -0.10 -9.14 16 11 C -0.09 -4.24 9.67 22.22 0.21 -4.02 16 12 C -0.19 -10.22 8.69 22.73 0.20 -10.03 16 13 C 0.08 4.40 5.58 -21.29 -0.12 4.28 16 14 C -0.49 -25.97 9.07 23.46 0.21 -25.76 16 15 H 0.08 4.16 7.89 -2.91 -0.02 4.13 16 16 C 0.03 1.46 5.20 85.26 0.44 1.91 16 17 N -0.82 -43.28 10.83 21.83 0.24 -43.05 16 18 Si 0.99 37.67 29.58 68.60 2.03 39.70 16 19 H -0.26 -9.50 7.11 99.48 0.71 -8.79 16 20 H -0.27 -9.85 7.11 99.48 0.71 -9.15 16 21 H -0.26 -9.44 7.11 99.48 0.71 -8.73 16 22 C -0.24 -11.76 9.80 22.73 0.22 -11.54 16 23 C -0.08 -3.16 9.67 22.22 0.21 -2.95 16 24 C 0.52 8.29 8.25 70.10 0.58 8.87 16 25 O -0.56 -12.94 17.01 19.71 0.34 -12.60 16 26 O -0.50 -4.90 12.41 -57.12 -0.71 -5.61 16 27 H 0.09 0.43 7.91 -2.38 -0.02 0.41 16 28 H 0.08 0.59 7.17 -2.39 -0.02 0.58 16 29 H 0.09 0.49 7.65 -2.38 -0.02 0.47 16 30 H 0.12 2.09 7.50 -2.91 -0.02 2.06 16 31 H 0.12 0.78 5.85 -2.39 -0.01 0.77 16 32 H 0.10 1.46 7.69 -2.39 -0.02 1.44 16 33 H 0.42 6.82 8.61 -96.74 -0.83 5.99 16 34 H 0.16 3.06 8.08 -2.39 -0.02 3.04 16 35 H 0.17 2.78 8.08 -2.39 -0.02 2.76 16 36 H 0.11 4.58 8.06 -2.91 -0.02 4.55 16 37 H 0.11 5.89 6.10 -2.91 -0.02 5.88 16 38 H 0.29 13.79 8.30 -92.71 -0.77 13.02 16 39 H 0.11 4.74 8.06 -2.91 -0.02 4.71 16 40 H 0.13 4.42 8.06 -2.91 -0.02 4.39 16 41 H 0.43 0.71 9.11 -74.06 -0.67 0.04 16 Total: -1.00 -80.02 369.58 -0.92 -80.94 By element: Atomic # 1 Polarization: 27.99 SS G_CDS: -0.41 Total: 27.58 kcal Atomic # 6 Polarization: -65.50 SS G_CDS: 3.57 Total: -61.93 kcal Atomic # 7 Polarization: -63.99 SS G_CDS: -0.89 Total: -64.87 kcal Atomic # 8 Polarization: -93.29 SS G_CDS: -4.91 Total: -98.21 kcal Atomic # 14 Polarization: 37.67 SS G_CDS: 2.03 Total: 39.70 kcal Atomic # 16 Polarization: 77.10 SS G_CDS: -0.31 Total: 76.79 kcal Total: -80.02 -0.92 -80.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588982686.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.386 kcal (2) G-P(sol) polarization free energy of solvation -80.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds