Wall clock time and date at job start Tue Mar 31 2020 22:53:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46501 * 109.47137 * 2 1 4 4 S 1.65599 * 119.99945 * 59.99843 * 3 2 1 5 5 O 1.42097 * 106.39954 * 178.54404 * 4 3 2 6 6 O 1.42098 * 106.40096 * 311.45884 * 4 3 2 7 7 C 1.76197 * 107.21990 * 65.00060 * 4 3 2 8 8 C 1.38658 * 119.87375 * 269.72810 * 7 4 3 9 9 C 1.38614 * 120.49904 * 179.72349 * 8 7 4 10 10 C 1.37638 * 120.24794 * 0.54940 * 9 8 7 11 11 C 1.40696 * 119.74530 * 359.72754 * 10 9 8 12 12 C 1.41397 * 120.24608 * 180.02562 * 11 10 9 13 13 H 1.08002 * 120.00024 * 155.25380 * 12 11 10 14 14 C 1.39945 * 119.99752 * 335.24894 * 12 11 10 15 15 N 1.30827 * 120.00281 * 342.24810 * 14 12 11 16 16 Si 1.86808 * 119.99884 * 162.25037 * 14 12 11 17 17 H 1.48497 * 109.47175 * 89.99755 * 16 14 12 18 18 H 1.48496 * 109.46705 * 209.99659 * 16 14 12 19 19 H 1.48501 * 109.47094 * 329.99815 * 16 14 12 20 20 C 1.37599 * 119.87592 * 90.00002 * 7 4 3 21 21 C 1.50704 * 109.47053 * 119.99933 * 2 1 3 22 22 O 1.20831 * 120.00043 * 24.99583 * 21 2 1 23 23 O 1.34231 * 120.00221 * 204.72978 * 21 2 1 24 24 C 1.52997 * 109.47334 * 239.99705 * 2 1 3 25 25 C 1.53002 * 117.49799 * 3.74596 * 24 2 1 26 26 C 1.53002 * 117.49790 * 295.08920 * 24 2 1 27 27 H 1.08996 * 109.47213 * 300.00040 * 1 2 3 28 28 H 1.09000 * 109.47391 * 60.00331 * 1 2 3 29 29 H 1.09006 * 109.46893 * 179.97438 * 1 2 3 30 30 H 0.96995 * 119.99412 * 240.00072 * 3 2 1 31 31 H 1.07999 * 119.75331 * 359.97438 * 8 7 4 32 32 H 1.07997 * 119.87942 * 180.25347 * 9 8 7 33 33 H 1.08001 * 120.13172 * 179.75012 * 10 9 8 34 34 H 0.96991 * 119.99952 * 180.02562 * 15 14 12 35 35 H 1.07996 * 120.12651 * 359.97438 * 20 7 4 36 36 H 0.96696 * 117.00064 * 180.27557 * 23 21 2 37 37 H 1.08999 * 115.55209 * 149.42175 * 24 2 1 38 38 H 1.08996 * 117.50043 * 0.02562 * 25 24 2 39 39 H 1.09004 * 117.50014 * 145.02147 * 25 24 2 40 40 H 1.09004 * 117.49490 * 214.97777 * 26 24 2 41 41 H 1.08996 * 117.50248 * 359.97438 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 16 1.6182 2.4009 1.2420 5 8 2.2642 3.6370 0.9701 6 8 0.2139 2.2811 1.4229 7 6 2.3646 1.7603 2.7038 8 6 1.6687 0.8613 3.4976 9 6 2.2456 0.3448 4.6473 10 6 3.5139 0.7289 5.0194 11 6 4.2272 1.6449 4.2247 12 6 5.5310 2.0463 4.5966 13 1 6.2210 2.4027 3.8461 14 6 5.9271 1.9819 5.9373 15 7 5.0265 1.8920 6.8819 16 14 7.7420 2.0243 6.3780 17 1 8.1702 3.4321 6.5774 18 1 7.9654 1.2569 7.6295 19 1 8.5330 1.4175 5.2773 20 6 3.6337 2.1583 3.0564 21 6 2.0323 -0.7104 1.2305 22 8 1.3395 -1.5362 1.7765 23 8 3.2515 -0.4297 1.7169 24 6 2.0400 -0.7213 -1.2492 25 6 0.9987 -1.2033 -2.2612 26 6 1.7330 -2.2147 -1.3775 27 1 -0.3633 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 2.5759 1.6984 -0.7275 31 1 0.6712 0.5580 3.2159 32 1 1.6961 -0.3579 5.2561 33 1 3.9600 0.3284 5.9177 34 1 5.3011 1.8478 7.8111 35 1 4.1724 2.8617 2.4388 36 1 3.5316 -0.9139 2.5056 37 1 2.9950 -0.3686 -1.6388 38 1 -0.0496 -1.0062 -2.0374 39 1 1.2687 -1.1680 -3.3167 40 1 2.4858 -2.8443 -1.8519 41 1 1.1680 -2.6834 -0.5718 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001593339228.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:39 Heat of formation + Delta-G solvation = -104.617327 kcal Electronic energy + Delta-G solvation = -29096.654948 eV Core-core repulsion = 25069.835640 eV Total energy + Delta-G solvation = -4026.819308 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.64949 -38.18501 -37.52802 -36.77573 -35.65146 -35.40813 -34.58338 -33.85291 -30.09565 -29.83388 -29.45035 -25.79452 -25.51137 -22.99606 -22.33591 -21.82886 -21.00787 -19.64946 -19.12186 -18.13859 -17.77904 -17.44958 -16.86710 -16.21045 -15.90403 -15.24199 -15.16588 -14.88858 -14.68707 -14.34553 -13.77679 -13.52440 -13.34842 -13.23225 -12.80003 -12.57465 -12.35056 -11.97176 -11.85404 -11.66024 -11.61016 -11.57392 -11.40072 -11.36344 -11.10652 -11.03531 -10.98079 -10.73320 -10.66968 -10.60246 -10.51235 -10.42303 -9.80369 -9.68173 -9.35163 -9.28815 -8.01681 -7.70199 -6.94257 -4.54998 0.89097 2.16457 2.35213 2.64129 2.98781 2.99944 3.06178 3.08465 3.35404 3.67906 3.81168 4.12996 4.34267 4.40329 4.60236 4.67645 4.82863 4.88291 5.10120 5.33434 5.41404 5.44234 5.47407 5.65826 5.78192 5.86164 5.92424 6.04021 6.05328 6.17619 6.45338 6.65592 6.75053 6.79845 6.90560 6.99658 7.05780 7.20071 7.36306 7.72138 7.78757 7.92344 8.22237 8.38436 8.65232 8.69889 10.01075 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.017439 B = 0.004187 C = 0.003944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.184177 B = 6686.204490 C = 7097.339966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.232 3.768 3 N -1.103 6.103 4 S 2.679 3.321 5 O -0.966 6.966 6 O -0.968 6.968 7 C -0.618 4.618 8 C -0.158 4.158 9 C -0.116 4.116 10 C -0.125 4.125 11 C 0.095 3.905 12 C -0.460 4.460 13 H 0.082 0.918 14 C 0.075 3.925 15 N -0.792 5.792 16 Si 0.910 3.090 17 H -0.268 1.268 18 H -0.276 1.276 19 H -0.260 1.260 20 C -0.105 4.105 21 C 0.468 3.532 22 O -0.505 6.505 23 O -0.487 6.487 24 C -0.158 4.158 25 C -0.170 4.170 26 C -0.173 4.173 27 H 0.107 0.893 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.420 0.580 31 H 0.103 0.897 32 H 0.096 0.904 33 H 0.123 0.877 34 H 0.283 0.717 35 H 0.110 0.890 36 H 0.411 0.589 37 H 0.123 0.877 38 H 0.108 0.892 39 H 0.099 0.901 40 H 0.100 0.900 41 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.192 -6.635 -12.876 14.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.141 3.859 3 N -0.861 5.861 4 S 2.776 3.224 5 O -0.957 6.957 6 O -0.958 6.958 7 C -0.710 4.710 8 C -0.179 4.179 9 C -0.136 4.136 10 C -0.144 4.144 11 C 0.091 3.909 12 C -0.489 4.489 13 H 0.100 0.900 14 C -0.143 4.143 15 N -0.417 5.417 16 Si 0.734 3.266 17 H -0.193 1.193 18 H -0.201 1.201 19 H -0.183 1.183 20 C -0.126 4.126 21 C 0.307 3.693 22 O -0.392 6.392 23 O -0.298 6.298 24 C -0.177 4.177 25 C -0.207 4.207 26 C -0.211 4.211 27 H 0.125 0.875 28 H 0.099 0.901 29 H 0.098 0.902 30 H 0.254 0.746 31 H 0.121 0.879 32 H 0.114 0.886 33 H 0.141 0.859 34 H 0.094 0.906 35 H 0.128 0.872 36 H 0.271 0.729 37 H 0.141 0.859 38 H 0.127 0.873 39 H 0.118 0.882 40 H 0.119 0.881 41 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -4.167 -5.928 -12.767 14.680 hybrid contribution 1.768 -0.582 1.106 2.166 sum -2.399 -6.510 -11.661 13.569 Atomic orbital electron populations 1.22765 0.90343 1.04370 1.06468 1.19334 0.95163 0.80987 0.90441 1.55701 1.67994 1.21690 1.40700 1.01967 0.73925 0.72813 0.73663 1.93552 1.76877 1.40345 1.84889 1.93480 1.30127 1.85981 1.86211 1.29538 1.07601 1.14365 1.19542 1.20110 0.98585 1.01247 0.97954 1.20763 0.96175 1.00287 0.96369 1.21596 0.94354 0.97527 1.00969 1.17623 0.92891 0.89759 0.90599 1.19605 0.97801 1.38241 0.93225 0.89977 1.25930 0.99963 0.92172 0.96236 1.69781 1.35569 1.34697 1.01648 0.86276 0.82217 0.79326 0.78781 1.19349 1.20051 1.18334 1.20663 0.92186 0.99778 1.00007 1.23529 0.80102 0.81004 0.84620 1.90677 1.57216 1.32884 1.58426 1.84599 1.33347 1.64790 1.47055 1.22332 1.01408 0.97576 0.96415 1.23249 0.98333 1.02710 0.96370 1.23127 1.03698 0.90948 1.03300 0.87484 0.90112 0.90223 0.74552 0.87890 0.88599 0.85917 0.90554 0.87222 0.72904 0.85914 0.87346 0.88236 0.88150 0.87726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.41 6.22 37.16 0.23 -2.18 16 2 C 0.23 3.11 0.96 -132.97 -0.13 2.98 16 3 N -1.10 -15.39 5.32 -0.40 0.00 -15.39 16 4 S 2.68 49.42 5.64 -107.50 -0.61 48.81 16 5 O -0.97 -20.05 17.27 -57.17 -0.99 -21.04 16 6 O -0.97 -19.03 13.87 -57.17 -0.79 -19.82 16 7 C -0.62 -12.95 3.47 -39.66 -0.14 -13.09 16 8 C -0.16 -3.33 6.25 -39.29 -0.25 -3.58 16 9 C -0.12 -2.52 9.63 -39.66 -0.38 -2.90 16 10 C -0.12 -2.93 8.70 -38.87 -0.34 -3.26 16 11 C 0.09 2.31 5.57 -106.82 -0.60 1.71 16 12 C -0.46 -11.32 9.05 -37.74 -0.34 -11.66 16 13 H 0.08 1.94 7.91 -52.49 -0.41 1.53 16 14 C 0.08 1.78 5.14 -17.34 -0.09 1.69 16 15 N -0.79 -19.35 10.97 55.55 0.61 -18.74 16 16 Si 0.91 17.65 29.60 -169.99 -5.03 12.62 16 17 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 18 H -0.28 -5.24 7.11 56.52 0.40 -4.84 16 19 H -0.26 -4.98 7.11 56.52 0.40 -4.57 16 20 C -0.10 -2.39 8.75 -38.87 -0.34 -2.73 16 21 C 0.47 7.41 3.73 36.01 0.13 7.54 16 22 O -0.50 -8.86 15.90 -18.75 -0.30 -9.16 16 23 O -0.49 -7.88 9.65 -39.26 -0.38 -8.26 16 24 C -0.16 -1.62 5.33 -90.62 -0.48 -2.10 16 25 C -0.17 -1.39 9.51 -26.69 -0.25 -1.65 16 26 C -0.17 -1.63 9.48 -26.69 -0.25 -1.88 16 27 H 0.11 1.72 5.36 -51.93 -0.28 1.44 16 28 H 0.08 0.89 7.22 -51.93 -0.38 0.52 16 29 H 0.08 0.96 6.91 -51.93 -0.36 0.60 16 30 H 0.42 4.65 8.53 -34.47 -0.29 4.36 16 31 H 0.10 2.14 7.30 -52.49 -0.38 1.75 16 32 H 0.10 1.91 8.06 -52.49 -0.42 1.49 16 33 H 0.12 2.98 6.18 -52.49 -0.32 2.66 16 34 H 0.28 6.32 8.30 -40.82 -0.34 5.98 16 35 H 0.11 2.45 7.60 -52.49 -0.40 2.05 16 36 H 0.41 6.41 8.62 45.56 0.39 6.80 16 37 H 0.12 1.10 8.04 -51.93 -0.42 0.69 16 38 H 0.11 0.86 5.82 -51.93 -0.30 0.56 16 39 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.10 1.12 7.44 -51.93 -0.39 0.74 16 LS Contribution 340.87 15.07 5.14 5.14 Total: -1.00 -29.89 340.87 -9.51 -39.40 By element: Atomic # 1 Polarization: 21.48 SS G_CDS: -3.94 Total: 17.53 kcal Atomic # 6 Polarization: -27.88 SS G_CDS: -3.22 Total: -31.10 kcal Atomic # 7 Polarization: -34.74 SS G_CDS: 0.61 Total: -34.13 kcal Atomic # 8 Polarization: -55.82 SS G_CDS: -2.46 Total: -58.28 kcal Atomic # 14 Polarization: 17.65 SS G_CDS: -5.03 Total: 12.62 kcal Atomic # 16 Polarization: 49.42 SS G_CDS: -0.61 Total: 48.81 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -29.89 -9.51 -39.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001593339228.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.214 kcal (2) G-P(sol) polarization free energy of solvation -29.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds