Wall clock time and date at job start Tue Mar 31 2020 22:53:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46501 * 109.47137 * 2 1 4 4 S 1.65599 * 119.99945 * 59.99843 * 3 2 1 5 5 O 1.42097 * 106.39954 * 178.54404 * 4 3 2 6 6 O 1.42098 * 106.40096 * 311.45884 * 4 3 2 7 7 C 1.76197 * 107.21990 * 65.00060 * 4 3 2 8 8 C 1.38658 * 119.87375 * 269.72810 * 7 4 3 9 9 C 1.38614 * 120.49904 * 179.72349 * 8 7 4 10 10 C 1.37638 * 120.24794 * 0.54940 * 9 8 7 11 11 C 1.40696 * 119.74530 * 359.72754 * 10 9 8 12 12 C 1.41397 * 120.24608 * 180.02562 * 11 10 9 13 13 H 1.08002 * 120.00024 * 155.25380 * 12 11 10 14 14 C 1.39945 * 119.99752 * 335.24894 * 12 11 10 15 15 N 1.30827 * 120.00281 * 342.24810 * 14 12 11 16 16 Si 1.86808 * 119.99884 * 162.25037 * 14 12 11 17 17 H 1.48497 * 109.47175 * 89.99755 * 16 14 12 18 18 H 1.48496 * 109.46705 * 209.99659 * 16 14 12 19 19 H 1.48501 * 109.47094 * 329.99815 * 16 14 12 20 20 C 1.37599 * 119.87592 * 90.00002 * 7 4 3 21 21 C 1.50704 * 109.47053 * 119.99933 * 2 1 3 22 22 O 1.20831 * 120.00043 * 24.99583 * 21 2 1 23 23 O 1.34231 * 120.00221 * 204.72978 * 21 2 1 24 24 C 1.52997 * 109.47334 * 239.99705 * 2 1 3 25 25 C 1.53002 * 117.49799 * 3.74596 * 24 2 1 26 26 C 1.53002 * 117.49790 * 295.08920 * 24 2 1 27 27 H 1.08996 * 109.47213 * 300.00040 * 1 2 3 28 28 H 1.09000 * 109.47391 * 60.00331 * 1 2 3 29 29 H 1.09006 * 109.46893 * 179.97438 * 1 2 3 30 30 H 0.96995 * 119.99412 * 240.00072 * 3 2 1 31 31 H 1.07999 * 119.75331 * 359.97438 * 8 7 4 32 32 H 1.07997 * 119.87942 * 180.25347 * 9 8 7 33 33 H 1.08001 * 120.13172 * 179.75012 * 10 9 8 34 34 H 0.96991 * 119.99952 * 180.02562 * 15 14 12 35 35 H 1.07996 * 120.12651 * 359.97438 * 20 7 4 36 36 H 0.96696 * 117.00064 * 180.27557 * 23 21 2 37 37 H 1.08999 * 115.55209 * 149.42175 * 24 2 1 38 38 H 1.08996 * 117.50043 * 0.02562 * 25 24 2 39 39 H 1.09004 * 117.50014 * 145.02147 * 25 24 2 40 40 H 1.09004 * 117.49490 * 214.97777 * 26 24 2 41 41 H 1.08996 * 117.50248 * 359.97438 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 16 1.6182 2.4009 1.2420 5 8 2.2642 3.6370 0.9701 6 8 0.2139 2.2811 1.4229 7 6 2.3646 1.7603 2.7038 8 6 1.6687 0.8613 3.4976 9 6 2.2456 0.3448 4.6473 10 6 3.5139 0.7289 5.0194 11 6 4.2272 1.6449 4.2247 12 6 5.5310 2.0463 4.5966 13 1 6.2210 2.4027 3.8461 14 6 5.9271 1.9819 5.9373 15 7 5.0265 1.8920 6.8819 16 14 7.7420 2.0243 6.3780 17 1 8.1702 3.4321 6.5774 18 1 7.9654 1.2569 7.6295 19 1 8.5330 1.4175 5.2773 20 6 3.6337 2.1583 3.0564 21 6 2.0323 -0.7104 1.2305 22 8 1.3395 -1.5362 1.7765 23 8 3.2515 -0.4297 1.7169 24 6 2.0400 -0.7213 -1.2492 25 6 0.9987 -1.2033 -2.2612 26 6 1.7330 -2.2147 -1.3775 27 1 -0.3633 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 2.5759 1.6984 -0.7275 31 1 0.6712 0.5580 3.2159 32 1 1.6961 -0.3579 5.2561 33 1 3.9600 0.3284 5.9177 34 1 5.3011 1.8478 7.8111 35 1 4.1724 2.8617 2.4388 36 1 3.5316 -0.9139 2.5056 37 1 2.9950 -0.3686 -1.6388 38 1 -0.0496 -1.0062 -2.0374 39 1 1.2687 -1.1680 -3.3167 40 1 2.4858 -2.8443 -1.8519 41 1 1.1680 -2.6834 -0.5718 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001593339228.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:38 Heat of formation + Delta-G solvation = -124.907651 kcal Electronic energy + Delta-G solvation = -29097.534802 eV Core-core repulsion = 25069.835640 eV Total energy + Delta-G solvation = -4027.699162 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.84045 -39.55874 -38.93123 -38.32159 -37.01678 -36.94457 -35.63937 -35.62580 -31.89769 -31.59303 -30.56872 -27.33348 -26.85426 -24.06591 -23.52554 -23.05566 -22.76864 -20.74134 -20.59683 -19.70715 -19.06742 -18.79576 -18.15065 -17.75048 -17.19350 -16.86149 -16.57735 -16.45060 -16.14820 -15.37780 -15.20938 -15.10075 -14.75151 -14.47059 -14.32096 -14.02683 -13.71954 -13.36895 -13.27771 -13.16477 -13.07048 -13.01403 -12.85027 -12.75153 -12.64074 -12.33698 -12.23560 -12.19084 -12.04967 -11.72661 -11.56748 -11.49590 -11.30708 -11.16820 -11.10563 -10.59233 -9.77726 -9.51567 -8.71328 -6.41773 -0.60888 0.42908 0.85069 1.14087 1.39143 1.45285 1.53459 1.95414 1.97159 2.18860 2.53457 2.73690 2.88020 3.34950 3.44445 3.54860 3.67920 3.88941 4.05722 4.12084 4.28217 4.31473 4.40611 4.46839 4.74227 4.83683 4.86595 4.92577 4.94409 5.01465 5.07475 5.15473 5.22259 5.29152 5.38534 5.42794 5.57687 5.64853 5.92267 5.96360 5.98954 6.11563 6.55497 6.83074 6.87549 6.94152 8.26307 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.017439 B = 0.004187 C = 0.003944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.184177 B = 6686.204490 C = 7097.339966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.231 3.769 3 N -1.084 6.084 4 S 2.704 3.296 5 O -0.988 6.988 6 O -0.977 6.977 7 C -0.621 4.621 8 C -0.153 4.153 9 C -0.116 4.116 10 C -0.137 4.137 11 C 0.075 3.925 12 C -0.493 4.493 13 H 0.082 0.918 14 C 0.038 3.962 15 N -0.824 5.824 16 Si 0.980 3.020 17 H -0.266 1.266 18 H -0.267 1.267 19 H -0.256 1.256 20 C -0.117 4.117 21 C 0.463 3.537 22 O -0.526 6.526 23 O -0.493 6.493 24 C -0.171 4.171 25 C -0.149 4.149 26 C -0.178 4.178 27 H 0.079 0.921 28 H 0.106 0.894 29 H 0.090 0.910 30 H 0.436 0.564 31 H 0.109 0.891 32 H 0.111 0.889 33 H 0.110 0.890 34 H 0.290 0.710 35 H 0.109 0.891 36 H 0.410 0.590 37 H 0.139 0.861 38 H 0.112 0.888 39 H 0.125 0.875 40 H 0.116 0.884 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.099 -7.132 -14.930 16.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.140 3.860 3 N -0.847 5.847 4 S 2.798 3.202 5 O -0.978 6.978 6 O -0.966 6.966 7 C -0.711 4.711 8 C -0.174 4.174 9 C -0.135 4.135 10 C -0.157 4.157 11 C 0.072 3.928 12 C -0.522 4.522 13 H 0.100 0.900 14 C -0.177 4.177 15 N -0.450 5.450 16 Si 0.801 3.199 17 H -0.191 1.191 18 H -0.192 1.192 19 H -0.179 1.179 20 C -0.138 4.138 21 C 0.304 3.696 22 O -0.414 6.414 23 O -0.304 6.304 24 C -0.191 4.191 25 C -0.186 4.186 26 C -0.216 4.216 27 H 0.098 0.902 28 H 0.124 0.876 29 H 0.109 0.891 30 H 0.274 0.726 31 H 0.127 0.873 32 H 0.129 0.871 33 H 0.128 0.872 34 H 0.101 0.899 35 H 0.127 0.873 36 H 0.270 0.730 37 H 0.157 0.843 38 H 0.130 0.870 39 H 0.143 0.857 40 H 0.134 0.866 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -4.067 -6.422 -14.808 16.645 hybrid contribution 1.610 -0.486 1.663 2.365 sum -2.457 -6.908 -13.145 15.052 Atomic orbital electron populations 1.22815 0.90028 1.05112 1.06318 1.19547 0.95368 0.80229 0.90859 1.55275 1.68176 1.21671 1.39535 1.01233 0.73278 0.72440 0.73272 1.93521 1.77269 1.41985 1.85042 1.93487 1.30477 1.86208 1.86462 1.29957 1.06827 1.13344 1.20966 1.20208 0.98667 1.00913 0.97602 1.20920 0.95653 1.00283 0.96668 1.21496 0.95142 0.98206 1.00828 1.17882 0.93357 0.90202 0.91404 1.19870 0.98377 1.39851 0.94143 0.90025 1.26722 1.04162 0.91198 0.95650 1.69829 1.37577 1.35367 1.02222 0.85220 0.76677 0.79328 0.78657 1.19062 1.19192 1.17922 1.20688 0.93024 1.00197 0.99865 1.24156 0.79599 0.80858 0.85015 1.90663 1.57622 1.33992 1.59163 1.84609 1.33815 1.64866 1.47065 1.22375 1.03048 0.97949 0.95690 1.23396 0.97922 1.00136 0.97107 1.23171 1.04342 0.90587 1.03458 0.90241 0.87565 0.89129 0.72561 0.87308 0.87071 0.87205 0.89887 0.87330 0.73031 0.84343 0.86978 0.85729 0.86612 0.89448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.53 6.22 71.98 0.45 -4.08 16 2 C 0.23 5.75 0.96 2.86 0.00 5.76 16 3 N -1.08 -28.24 5.32 -155.18 -0.83 -29.07 16 4 S 2.70 97.37 5.64 -56.49 -0.32 97.05 16 5 O -0.99 -40.24 17.27 -128.00 -2.21 -42.45 16 6 O -0.98 -37.38 13.87 -128.00 -1.78 -39.16 16 7 C -0.62 -26.12 3.47 22.22 0.08 -26.04 16 8 C -0.15 -6.49 6.25 22.46 0.14 -6.35 16 9 C -0.12 -5.09 9.63 22.22 0.21 -4.88 16 10 C -0.14 -6.62 8.70 22.73 0.20 -6.43 16 11 C 0.07 3.75 5.57 -21.29 -0.12 3.63 16 12 C -0.49 -24.96 9.05 23.46 0.21 -24.74 16 13 H 0.08 3.98 7.91 -2.91 -0.02 3.95 16 14 C 0.04 1.82 5.14 85.26 0.44 2.26 16 15 N -0.82 -41.11 10.97 21.83 0.24 -40.87 16 16 Si 0.98 36.32 29.60 68.60 2.03 38.35 16 17 H -0.27 -9.67 7.11 99.48 0.71 -8.97 16 18 H -0.27 -9.47 7.11 99.48 0.71 -8.76 16 19 H -0.26 -9.21 7.11 99.48 0.71 -8.50 16 20 C -0.12 -5.42 8.75 22.73 0.20 -5.22 16 21 C 0.46 14.34 3.73 71.24 0.27 14.60 16 22 O -0.53 -18.31 15.90 21.95 0.35 -17.96 16 23 O -0.49 -15.95 9.65 -51.43 -0.50 -16.44 16 24 C -0.17 -3.00 5.33 -10.79 -0.06 -3.06 16 25 C -0.15 -1.86 9.51 30.62 0.29 -1.57 16 26 C -0.18 -2.87 9.48 30.62 0.29 -2.58 16 27 H 0.08 2.45 5.36 -2.39 -0.01 2.43 16 28 H 0.11 2.02 7.22 -2.39 -0.02 2.00 16 29 H 0.09 2.01 6.91 -2.38 -0.02 1.99 16 30 H 0.44 8.58 8.53 -96.75 -0.83 7.76 16 31 H 0.11 4.49 7.30 -2.91 -0.02 4.47 16 32 H 0.11 4.45 8.06 -2.91 -0.02 4.42 16 33 H 0.11 5.56 6.18 -2.91 -0.02 5.54 16 34 H 0.29 13.13 8.30 -92.72 -0.77 12.36 16 35 H 0.11 4.96 7.60 -2.91 -0.02 4.94 16 36 H 0.41 13.17 8.62 -74.06 -0.64 12.53 16 37 H 0.14 2.01 8.04 -2.39 -0.02 1.99 16 38 H 0.11 1.35 5.82 -2.39 -0.01 1.33 16 39 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.12 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.09 1.74 7.44 -2.39 -0.02 1.73 16 Total: -1.00 -64.81 340.87 -0.76 -65.57 By element: Atomic # 1 Polarization: 44.03 SS G_CDS: -0.36 Total: 43.67 kcal Atomic # 6 Polarization: -61.30 SS G_CDS: 2.60 Total: -58.70 kcal Atomic # 7 Polarization: -69.35 SS G_CDS: -0.59 Total: -69.93 kcal Atomic # 8 Polarization: -111.88 SS G_CDS: -4.13 Total: -116.01 kcal Atomic # 14 Polarization: 36.32 SS G_CDS: 2.03 Total: 38.35 kcal Atomic # 16 Polarization: 97.37 SS G_CDS: -0.32 Total: 97.05 kcal Total: -64.81 -0.76 -65.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001593339228.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.334 kcal (2) G-P(sol) polarization free energy of solvation -64.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds