Wall clock time and date at job start Tue Mar 31 2020 22:53:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46490 * 109.47206 * 2 1 4 4 S 1.65603 * 120.00222 * 306.96026 * 3 2 1 5 5 O 1.42104 * 106.40119 * 51.33051 * 4 3 2 6 6 O 1.42103 * 106.40407 * 184.24159 * 4 3 2 7 7 C 1.76194 * 107.22128 * 297.78714 * 4 3 2 8 8 C 1.38660 * 119.87587 * 276.68710 * 7 4 3 9 9 C 1.38611 * 120.50099 * 179.71827 * 8 7 4 10 10 C 1.37639 * 120.24711 * 0.55620 * 9 8 7 11 11 C 1.40707 * 119.74534 * 359.72201 * 10 9 8 12 12 C 1.41393 * 120.24311 * 180.02562 * 11 10 9 13 13 H 1.08001 * 119.99460 * 145.71607 * 12 11 10 14 14 C 1.39945 * 120.00333 * 325.72210 * 12 11 10 15 15 N 1.30821 * 119.99899 * 163.97612 * 14 12 11 16 16 Si 1.86797 * 119.99927 * 343.98123 * 14 12 11 17 17 H 1.48507 * 109.47360 * 84.56177 * 16 14 12 18 18 H 1.48501 * 109.47278 * 204.56335 * 16 14 12 19 19 H 1.48500 * 109.47121 * 324.56514 * 16 14 12 20 20 C 1.37599 * 119.87464 * 96.95863 * 7 4 3 21 21 C 1.50699 * 109.46868 * 239.99981 * 2 1 3 22 22 O 1.20833 * 120.00152 * 335.00192 * 21 2 1 23 23 O 1.34227 * 120.00238 * 155.00110 * 21 2 1 24 24 C 1.52995 * 109.46932 * 120.00343 * 2 1 3 25 25 C 1.52999 * 117.50091 * 123.74495 * 24 2 1 26 26 C 1.53000 * 117.50248 * 55.08256 * 24 2 1 27 27 H 1.08996 * 109.47252 * 188.46189 * 1 2 3 28 28 H 1.09001 * 109.46850 * 308.47091 * 1 2 3 29 29 H 1.09006 * 109.46676 * 68.46473 * 1 2 3 30 30 H 0.97003 * 119.99906 * 126.96646 * 3 2 1 31 31 H 1.08000 * 119.74928 * 0.02562 * 8 7 4 32 32 H 1.07995 * 119.88072 * 180.25511 * 9 8 7 33 33 H 1.08000 * 120.12772 * 179.74428 * 10 9 8 34 34 H 0.97002 * 119.99766 * 179.97438 * 15 14 12 35 35 H 1.07997 * 120.12783 * 359.97438 * 20 7 4 36 36 H 0.96698 * 117.00524 * 179.97438 * 23 21 2 37 37 H 1.09000 * 115.55146 * 269.41564 * 24 2 1 38 38 H 1.09003 * 117.49721 * 359.97438 * 25 24 2 39 39 H 1.08996 * 117.50030 * 145.01895 * 25 24 2 40 40 H 1.09001 * 117.50250 * 214.98398 * 26 24 2 41 41 H 1.09005 * 117.49869 * 359.97438 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 16 1.4815 2.4493 -1.1459 5 8 0.0622 2.3815 -1.1240 6 8 2.2051 3.6550 -0.9411 7 6 1.9851 1.8272 -2.7156 8 6 3.2663 2.0819 -3.1808 9 6 3.6780 1.5939 -4.4111 10 6 2.8132 0.8594 -5.1903 11 6 1.5088 0.5997 -4.7310 12 6 0.6120 -0.1541 -5.5226 13 1 -0.1048 -0.8097 -5.0506 14 6 0.6532 -0.0508 -6.9176 15 7 0.0632 -0.9536 -7.6581 16 14 1.5508 1.3761 -7.7223 17 1 2.9953 1.0510 -7.8368 18 1 0.9884 1.6146 -9.0759 19 1 1.3824 2.5971 -6.8941 20 6 1.1037 1.0952 -3.4777 21 6 2.0323 -0.7104 -1.2305 22 8 1.3395 -1.5363 -1.7764 23 8 3.2493 -0.4258 -1.7200 24 6 2.0400 -0.7213 1.2492 25 6 2.9862 -1.9060 1.0441 26 6 1.5431 -2.1475 1.4938 27 1 -0.3633 -1.0164 0.1512 28 1 -0.3633 0.6393 0.8046 29 1 -0.3633 0.3773 -0.9560 30 1 2.6563 1.6700 0.6712 31 1 3.9502 2.6607 -2.5777 32 1 4.6795 1.7948 -4.7618 33 1 3.1347 0.4836 -6.1504 34 1 0.0915 -0.8818 -8.6250 35 1 0.1050 0.9014 -3.1152 36 1 3.5281 -0.9075 -2.5108 37 1 2.2062 -0.0897 2.1219 38 1 3.2451 -2.1718 0.0192 39 1 3.7747 -2.0540 1.7820 40 1 1.3827 -2.4543 2.5274 41 1 0.8525 -2.5719 0.7650 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001593339229.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:41 Heat of formation + Delta-G solvation = -105.332473 kcal Electronic energy + Delta-G solvation = -29417.944672 eV Core-core repulsion = 25391.094353 eV Total energy + Delta-G solvation = -4026.850319 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.74652 -38.04582 -37.65992 -36.88029 -35.73172 -35.50707 -34.78428 -33.73739 -30.72452 -30.24332 -29.60590 -25.38543 -25.38367 -23.20811 -22.44738 -22.26157 -20.94698 -19.76324 -19.24141 -18.23249 -17.85308 -17.46636 -16.98626 -16.35964 -16.13026 -15.38281 -15.12712 -14.83500 -14.75601 -14.37485 -13.84814 -13.65377 -13.28492 -13.19880 -12.92475 -12.83607 -12.49864 -12.20651 -11.92076 -11.84548 -11.77218 -11.71336 -11.58519 -11.50182 -11.13826 -10.98291 -10.96180 -10.78177 -10.74437 -10.56858 -10.38974 -10.33495 -9.99282 -9.81480 -9.49885 -9.18348 -8.33822 -7.84324 -7.03240 -4.61849 0.76501 1.83637 2.32217 2.44749 2.99584 3.08779 3.10226 3.17011 3.22102 3.59158 3.85866 4.00974 4.28419 4.30853 4.56466 4.67094 4.78433 4.92280 5.07806 5.13311 5.27919 5.43402 5.50502 5.63769 5.76940 5.77762 5.87134 5.94709 5.97562 6.09046 6.20789 6.37633 6.49049 6.54274 6.85364 6.85815 6.92014 7.06153 7.16327 7.36375 7.63434 7.76060 8.17280 8.24249 8.43449 8.64861 9.99370 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.014871 B = 0.005205 C = 0.004582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.360766 B = 5378.193715 C = 6109.273313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.230 3.770 3 N -1.102 6.102 4 S 2.681 3.319 5 O -0.960 6.960 6 O -0.967 6.967 7 C -0.627 4.627 8 C -0.130 4.130 9 C -0.097 4.097 10 C -0.199 4.199 11 C 0.077 3.923 12 C -0.444 4.444 13 H 0.096 0.904 14 C 0.084 3.916 15 N -0.804 5.804 16 Si 0.906 3.094 17 H -0.264 1.264 18 H -0.287 1.287 19 H -0.249 1.249 20 C -0.103 4.103 21 C 0.462 3.538 22 O -0.489 6.489 23 O -0.497 6.497 24 C -0.151 4.151 25 C -0.177 4.177 26 C -0.169 4.169 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.094 0.906 30 H 0.419 0.581 31 H 0.109 0.891 32 H 0.103 0.897 33 H 0.111 0.889 34 H 0.286 0.714 35 H 0.118 0.882 36 H 0.409 0.591 37 H 0.127 0.873 38 H 0.096 0.904 39 H 0.102 0.898 40 H 0.103 0.897 41 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.086 -0.617 14.665 15.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.139 3.861 3 N -0.860 5.860 4 S 2.777 3.223 5 O -0.950 6.950 6 O -0.958 6.958 7 C -0.718 4.718 8 C -0.151 4.151 9 C -0.116 4.116 10 C -0.218 4.218 11 C 0.073 3.927 12 C -0.473 4.473 13 H 0.114 0.886 14 C -0.135 4.135 15 N -0.428 5.428 16 Si 0.732 3.268 17 H -0.190 1.190 18 H -0.214 1.214 19 H -0.173 1.173 20 C -0.124 4.124 21 C 0.300 3.700 22 O -0.374 6.374 23 O -0.308 6.308 24 C -0.171 4.171 25 C -0.214 4.214 26 C -0.206 4.206 27 H 0.100 0.900 28 H 0.102 0.898 29 H 0.113 0.887 30 H 0.254 0.746 31 H 0.127 0.873 32 H 0.121 0.879 33 H 0.129 0.871 34 H 0.097 0.903 35 H 0.136 0.864 36 H 0.269 0.731 37 H 0.145 0.855 38 H 0.115 0.885 39 H 0.121 0.879 40 H 0.121 0.879 41 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 5.022 -0.056 14.669 15.505 hybrid contribution 1.272 -0.168 -1.378 1.883 sum 6.294 -0.224 13.292 14.708 Atomic orbital electron populations 1.22520 0.89476 1.04237 1.06287 1.19527 0.95625 0.80925 0.90053 1.55675 1.61208 1.21260 1.47836 1.01975 0.73758 0.72679 0.73862 1.93566 1.28641 1.86027 1.86804 1.93546 1.73963 1.42333 1.85948 1.29834 1.04356 1.16713 1.20930 1.19947 0.93756 1.03771 0.97638 1.20707 0.98207 0.98011 0.94696 1.21566 0.94226 1.05104 1.00947 1.17752 0.91915 0.90690 0.92385 1.19483 1.16223 1.21001 0.90583 0.88635 1.26111 0.93581 0.96350 0.97468 1.69671 1.34896 1.30788 1.07474 0.86459 0.79513 0.82790 0.78074 1.18995 1.21356 1.17290 1.20946 0.97114 0.97461 0.96861 1.23596 0.79888 0.81417 0.85074 1.90783 1.56579 1.32246 1.57797 1.84526 1.33931 1.65576 1.46772 1.22315 1.05805 0.91405 0.97558 1.23186 0.93778 1.01173 1.03249 1.23150 0.97588 0.96603 1.03264 0.90040 0.89847 0.88705 0.74567 0.87292 0.87937 0.87136 0.90300 0.86382 0.73141 0.85467 0.88525 0.87947 0.87862 0.87590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.36 6.72 37.16 0.25 -2.11 16 2 C 0.23 3.06 0.96 -132.98 -0.13 2.93 16 3 N -1.10 -14.48 5.30 -0.41 0.00 -14.48 16 4 S 2.68 46.89 5.63 -107.50 -0.61 46.29 16 5 O -0.96 -18.54 13.80 -57.17 -0.79 -19.33 16 6 O -0.97 -18.51 17.46 -57.17 -1.00 -19.50 16 7 C -0.63 -12.47 3.50 -39.66 -0.14 -12.60 16 8 C -0.13 -2.48 8.51 -39.29 -0.33 -2.82 16 9 C -0.10 -1.89 10.02 -39.66 -0.40 -2.28 16 10 C -0.20 -4.39 7.30 -38.87 -0.28 -4.67 16 11 C 0.08 1.84 5.00 -106.82 -0.53 1.31 16 12 C -0.44 -11.73 9.56 -37.74 -0.36 -12.09 16 13 H 0.10 2.71 8.06 -52.49 -0.42 2.28 16 14 C 0.08 2.15 5.41 -17.34 -0.09 2.05 16 15 N -0.80 -21.07 13.93 55.55 0.77 -20.29 16 16 Si 0.91 20.19 24.85 -169.99 -4.22 15.97 16 17 H -0.26 -5.59 6.26 56.52 0.35 -5.23 16 18 H -0.29 -6.17 7.11 56.52 0.40 -5.77 16 19 H -0.25 -5.76 7.11 56.52 0.40 -5.36 16 20 C -0.10 -2.31 7.79 -38.87 -0.30 -2.61 16 21 C 0.46 7.28 2.29 36.01 0.08 7.36 16 22 O -0.49 -9.23 16.86 -18.76 -0.32 -9.55 16 23 O -0.50 -7.27 10.34 -39.25 -0.41 -7.68 16 24 C -0.15 -1.50 5.32 -90.62 -0.48 -1.98 16 25 C -0.18 -1.71 9.68 -26.69 -0.26 -1.97 16 26 C -0.17 -1.56 9.47 -26.69 -0.25 -1.82 16 27 H 0.08 1.04 6.68 -51.93 -0.35 0.69 16 28 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 29 H 0.09 1.62 5.67 -51.93 -0.29 1.32 16 30 H 0.42 4.20 8.58 -34.47 -0.30 3.90 16 31 H 0.11 1.88 7.76 -52.49 -0.41 1.47 16 32 H 0.10 1.70 8.06 -52.49 -0.42 1.28 16 33 H 0.11 2.44 4.88 -52.49 -0.26 2.19 16 34 H 0.29 6.80 8.30 -40.82 -0.34 6.46 16 35 H 0.12 2.69 6.98 -52.49 -0.37 2.33 16 36 H 0.41 5.59 9.10 45.56 0.41 6.00 16 37 H 0.13 0.96 8.09 -51.93 -0.42 0.54 16 38 H 0.10 1.10 6.19 -51.93 -0.32 0.78 16 39 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 41 H 0.11 1.14 7.26 -51.93 -0.38 0.76 16 LS Contribution 340.22 15.07 5.13 5.13 Total: -1.00 -31.18 340.22 -8.64 -39.83 By element: Atomic # 1 Polarization: 18.89 SS G_CDS: -3.97 Total: 14.92 kcal Atomic # 6 Polarization: -28.06 SS G_CDS: -3.24 Total: -31.30 kcal Atomic # 7 Polarization: -35.54 SS G_CDS: 0.77 Total: -34.77 kcal Atomic # 8 Polarization: -53.55 SS G_CDS: -2.51 Total: -56.06 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -4.22 Total: 15.97 kcal Atomic # 16 Polarization: 46.89 SS G_CDS: -0.61 Total: 46.29 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.18 -8.64 -39.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001593339229.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.507 kcal (2) G-P(sol) polarization free energy of solvation -31.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds