Wall clock time and date at job start Tue Mar 31 2020 22:19:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86794 * 120.00139 * 2 1 4 4 H 1.48501 * 109.47683 * 270.00619 * 3 2 1 5 5 H 1.48503 * 109.47152 * 30.00552 * 3 2 1 6 6 H 1.48507 * 109.46993 * 150.00344 * 3 2 1 7 7 C 1.37877 * 119.99656 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00391 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99917 * 179.97438 * 7 2 1 10 10 C 1.50698 * 109.47529 * 179.97438 * 9 7 2 11 11 C 1.38235 * 119.99413 * 90.00010 * 10 9 7 12 12 C 1.38240 * 119.99934 * 180.02562 * 11 10 9 13 13 C 1.38243 * 119.99841 * 0.02562 * 12 11 10 14 14 S 1.76196 * 120.00001 * 179.97438 * 13 12 11 15 15 O 1.42095 * 106.40349 * 336.46213 * 14 13 12 16 16 O 1.42103 * 106.40139 * 203.54016 * 14 13 12 17 17 N 1.65599 * 107.21437 * 90.00389 * 14 13 12 18 18 C 1.46497 * 120.00411 * 64.99875 * 17 14 13 19 19 H 1.09002 * 112.90477 * 346.25028 * 18 17 14 20 20 C 1.53779 * 113.61581 * 117.50201 * 18 17 14 21 21 C 1.53779 * 87.08402 * 139.98450 * 20 18 17 22 22 H 1.09000 * 113.61527 * 89.11480 * 21 20 18 23 23 C 1.50702 * 113.61542 * 220.02398 * 21 20 18 24 24 O 1.20820 * 120.00636 * 97.49641 * 23 21 20 25 25 O 1.34230 * 119.99521 * 277.49201 * 23 21 20 26 26 C 1.53784 * 113.61569 * 214.99981 * 18 17 14 27 27 C 1.38235 * 119.99781 * 0.25577 * 13 12 11 28 28 C 1.38231 * 120.00280 * 269.98793 * 10 9 7 29 29 H 0.97001 * 119.99874 * 359.97438 * 1 2 3 30 30 H 1.09003 * 109.46480 * 60.00242 * 9 7 2 31 31 H 1.08996 * 109.47249 * 300.00530 * 9 7 2 32 32 H 1.07992 * 120.00671 * 359.97438 * 11 10 9 33 33 H 1.07997 * 120.00542 * 179.97438 * 12 11 10 34 34 H 0.97009 * 120.00161 * 244.99747 * 17 14 13 35 35 H 1.09006 * 113.61307 * 25.43652 * 20 18 17 36 36 H 1.09007 * 113.61642 * 254.53409 * 20 18 17 37 37 H 0.96705 * 116.99863 * 179.97438 * 25 23 21 38 38 H 1.09004 * 113.61451 * 105.47149 * 26 18 17 39 39 H 1.08994 * 113.61477 * 334.56451 * 26 18 17 40 40 H 1.08005 * 120.00014 * 179.73055 * 27 13 12 41 41 H 1.08002 * 120.00295 * 359.97438 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1942 -0.0011 10 6 4.0139 -2.6149 -0.0010 11 6 4.2438 -3.2667 -1.1982 12 6 4.7041 -4.5702 -1.1982 13 6 4.9340 -5.2221 -0.0009 14 16 5.5201 -6.8837 -0.0009 15 8 5.1402 -7.4432 -1.2506 16 8 5.1401 -7.4432 1.2489 17 7 7.1748 -6.8197 -0.0008 18 6 7.8860 -6.2557 1.1491 19 1 7.2317 -5.7029 1.8231 20 6 8.7972 -7.2659 1.8659 21 6 9.8186 -6.1251 2.0077 22 1 9.6926 -5.5366 2.9165 23 6 11.2440 -6.5596 1.7830 24 8 11.7629 -6.3953 0.7044 25 8 11.9372 -7.1291 2.7815 26 6 9.1651 -5.4917 0.7680 27 6 4.6985 -4.5722 1.1962 28 6 4.2450 -3.2663 1.1961 29 1 -0.4850 0.8401 0.0004 30 1 3.8751 -0.6805 0.8889 31 1 3.8745 -0.6801 -0.8910 32 1 4.0630 -2.7580 -2.1334 33 1 4.8833 -5.0797 -2.1334 34 1 7.6733 -7.1558 -0.7621 35 1 9.1371 -8.0791 1.2245 36 1 8.3978 -7.6152 2.8181 37 1 12.8480 -7.3916 2.5896 38 1 9.0627 -4.4085 0.8338 39 1 9.6056 -5.8198 -0.1735 40 1 4.8740 -5.0829 2.1315 41 1 4.0659 -2.7568 2.1315 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594610480.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:16 Heat of formation + Delta-G solvation = -127.288799 kcal Electronic energy + Delta-G solvation = -26473.004972 eV Core-core repulsion = 22445.202555 eV Total energy + Delta-G solvation = -4027.802417 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.11381 -38.99635 -38.88027 -37.17986 -36.47940 -35.83125 -33.72457 -33.41654 -31.77240 -30.68967 -28.00758 -26.93626 -26.21750 -23.54755 -22.58706 -22.27433 -20.81152 -20.29159 -19.49763 -18.61560 -18.00612 -17.47714 -17.30521 -16.93535 -16.30543 -15.86195 -15.38471 -15.24596 -15.05917 -14.48267 -14.32149 -13.95570 -13.67965 -13.31124 -13.21892 -12.98524 -12.88892 -12.71928 -12.64151 -12.10182 -12.00642 -11.99519 -11.92634 -11.80884 -11.69704 -11.40976 -11.39121 -11.00618 -10.95420 -10.78238 -10.55675 -10.27554 -10.14443 -9.73391 -9.55867 -8.72860 -8.67903 -8.49016 -6.20685 -4.22432 0.40648 1.21211 1.68785 1.74676 2.56481 3.00450 3.18487 3.27101 3.27469 3.65726 3.84832 3.92302 4.04186 4.25459 4.28487 4.33479 4.42177 4.74647 4.89990 5.05191 5.13788 5.14940 5.20350 5.25212 5.30440 5.45272 5.52020 5.53764 5.71265 5.78426 5.94256 6.07305 6.11650 6.19903 6.39308 6.65127 6.66555 6.70112 6.78350 7.25035 7.26656 7.46253 7.51029 8.32072 8.82825 9.37420 10.91782 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.014833 B = 0.002696 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1887.262790 B =10382.043775 C =11586.627661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.072 3.928 3 Si 0.879 3.121 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.265 1.265 7 C -0.520 4.520 8 H 0.075 0.925 9 C 0.006 3.994 10 C 0.032 3.968 11 C -0.143 4.143 12 C -0.019 4.019 13 C -0.701 4.701 14 S 2.695 3.305 15 O -0.964 6.964 16 O -0.960 6.960 17 N -1.106 6.106 18 C 0.134 3.866 19 H 0.123 0.877 20 C -0.132 4.132 21 C -0.113 4.113 22 H 0.132 0.868 23 C 0.491 3.509 24 O -0.514 6.514 25 O -0.515 6.515 26 C -0.127 4.127 27 C -0.026 4.026 28 C -0.142 4.142 29 H 0.266 0.734 30 H 0.034 0.966 31 H 0.029 0.971 32 H 0.130 0.870 33 H 0.131 0.869 34 H 0.419 0.581 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.409 0.591 38 H 0.090 0.910 39 H 0.105 0.895 40 H 0.131 0.869 41 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.574 -13.016 4.396 26.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.130 4.130 3 Si 0.706 3.294 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.189 1.189 7 C -0.558 4.558 8 H 0.093 0.907 9 C -0.031 4.031 10 C 0.031 3.969 11 C -0.162 4.162 12 C -0.039 4.039 13 C -0.791 4.791 14 S 2.788 3.212 15 O -0.954 6.954 16 O -0.950 6.950 17 N -0.862 5.862 18 C 0.026 3.974 19 H 0.140 0.860 20 C -0.172 4.172 21 C -0.133 4.133 22 H 0.150 0.850 23 C 0.333 3.667 24 O -0.402 6.402 25 O -0.327 6.327 26 C -0.166 4.166 27 C -0.046 4.046 28 C -0.161 4.161 29 H 0.076 0.924 30 H 0.052 0.948 31 H 0.048 0.952 32 H 0.148 0.852 33 H 0.149 0.851 34 H 0.253 0.747 35 H 0.113 0.887 36 H 0.112 0.888 37 H 0.268 0.732 38 H 0.108 0.892 39 H 0.123 0.877 40 H 0.149 0.851 41 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 21.510 -13.447 4.330 25.734 hybrid contribution 1.147 1.462 -0.463 1.915 sum 22.656 -11.985 3.866 25.921 Atomic orbital electron populations 1.69890 1.06273 1.27235 1.49739 1.24990 0.94772 0.99070 0.94216 0.86788 0.80318 0.83545 0.78739 1.20041 1.21070 1.18938 1.20813 0.87648 0.94933 1.52420 0.90668 1.18988 0.97933 0.88175 0.98031 1.20706 0.86145 0.97664 0.92348 1.21234 1.01418 0.94709 0.98796 1.20777 0.93009 0.94243 0.95864 1.30356 1.23381 1.25388 0.99926 1.01712 0.71942 0.74109 0.73481 1.93578 1.80942 1.76946 1.43921 1.93576 1.81138 1.75947 1.44352 1.55611 1.26071 1.77177 1.27357 1.22148 0.93051 0.94805 0.87446 0.85953 1.23474 0.94345 0.96573 1.02810 1.22367 0.87033 1.01075 1.02813 0.85006 1.23258 0.88803 0.73336 0.81294 1.90731 1.70617 1.52238 1.26585 1.84559 1.31467 1.72845 1.43806 1.23445 0.94098 1.01512 0.97558 1.20785 0.93722 0.94337 0.95737 1.21217 1.01473 0.94657 0.98750 0.92352 0.94797 0.95239 0.85229 0.85073 0.74678 0.88720 0.88796 0.73183 0.89180 0.87672 0.85083 0.85209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.55 13.96 55.43 0.77 -25.78 16 2 C 0.07 2.00 5.47 -17.82 -0.10 1.91 16 3 Si 0.88 20.36 27.47 -169.99 -4.67 15.69 16 4 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 6 H -0.26 -5.79 6.54 56.52 0.37 -5.42 16 7 C -0.52 -14.09 9.65 -34.44 -0.33 -14.42 16 8 H 0.08 2.26 7.98 -52.49 -0.42 1.84 16 9 C 0.01 0.13 4.17 -29.04 -0.12 0.01 16 10 C 0.03 0.61 5.07 -104.63 -0.53 0.08 16 11 C -0.14 -2.49 9.70 -39.58 -0.38 -2.87 16 12 C -0.02 -0.30 9.52 -39.58 -0.38 -0.67 16 13 C -0.70 -10.09 5.95 -39.58 -0.24 -10.32 16 14 S 2.69 33.82 5.68 -107.50 -0.61 33.21 16 15 O -0.96 -14.71 17.28 -57.17 -0.99 -15.70 16 16 O -0.96 -14.15 17.04 -57.17 -0.97 -15.13 16 17 N -1.11 -9.36 5.79 -4.20 -0.02 -9.38 16 18 C 0.13 0.96 4.35 -67.12 -0.29 0.67 16 19 H 0.12 0.80 7.80 -51.93 -0.41 0.39 16 20 C -0.13 -0.82 7.43 -25.92 -0.19 -1.01 16 21 C -0.11 -0.67 4.26 -90.96 -0.39 -1.06 16 22 H 0.13 0.53 8.14 -51.93 -0.42 0.11 16 23 C 0.49 3.69 7.85 36.01 0.28 3.97 16 24 O -0.51 -5.48 16.66 -18.75 -0.31 -5.79 16 25 O -0.52 -2.85 13.42 -39.26 -0.53 -3.37 16 26 C -0.13 -0.84 7.19 -25.91 -0.19 -1.03 16 27 C -0.03 -0.39 9.28 -39.58 -0.37 -0.75 16 28 C -0.14 -2.42 9.70 -39.58 -0.38 -2.80 16 29 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 30 H 0.03 0.73 7.14 -51.93 -0.37 0.36 16 31 H 0.03 0.63 7.51 -51.93 -0.39 0.24 16 32 H 0.13 2.13 8.06 -52.49 -0.42 1.71 16 33 H 0.13 1.73 7.62 -52.49 -0.40 1.33 16 34 H 0.42 2.76 8.94 -34.47 -0.31 2.45 16 35 H 0.09 0.58 8.09 -51.93 -0.42 0.16 16 36 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.41 0.68 9.10 45.56 0.41 1.09 16 38 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.10 0.77 7.43 -51.93 -0.39 0.39 16 40 H 0.13 1.57 7.61 -52.48 -0.40 1.17 16 41 H 0.13 2.06 8.06 -52.49 -0.42 1.63 16 LS Contribution 365.74 15.07 5.51 5.51 Total: -1.00 -36.60 365.74 -9.79 -46.39 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -4.36 Total: 2.65 kcal Atomic # 6 Polarization: -24.70 SS G_CDS: -3.60 Total: -28.30 kcal Atomic # 7 Polarization: -35.90 SS G_CDS: 0.75 Total: -35.16 kcal Atomic # 8 Polarization: -37.19 SS G_CDS: -2.80 Total: -39.99 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -4.67 Total: 15.69 kcal Atomic # 16 Polarization: 33.82 SS G_CDS: -0.61 Total: 33.21 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -36.60 -9.79 -46.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594610480.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.903 kcal (2) G-P(sol) polarization free energy of solvation -36.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds