Wall clock time and date at job start Tue Mar 31 2020 22:19:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86794 * 120.00139 * 2 1 4 4 H 1.48501 * 109.47683 * 270.00619 * 3 2 1 5 5 H 1.48503 * 109.47152 * 30.00552 * 3 2 1 6 6 H 1.48507 * 109.46993 * 150.00344 * 3 2 1 7 7 C 1.37877 * 119.99656 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00391 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99917 * 179.97438 * 7 2 1 10 10 C 1.50698 * 109.47529 * 179.97438 * 9 7 2 11 11 C 1.38235 * 119.99413 * 90.00010 * 10 9 7 12 12 C 1.38240 * 119.99934 * 180.02562 * 11 10 9 13 13 C 1.38243 * 119.99841 * 0.02562 * 12 11 10 14 14 S 1.76196 * 120.00001 * 179.97438 * 13 12 11 15 15 O 1.42095 * 106.40349 * 336.46213 * 14 13 12 16 16 O 1.42103 * 106.40139 * 203.54016 * 14 13 12 17 17 N 1.65599 * 107.21437 * 90.00389 * 14 13 12 18 18 C 1.46497 * 120.00411 * 64.99875 * 17 14 13 19 19 H 1.09002 * 112.90477 * 346.25028 * 18 17 14 20 20 C 1.53779 * 113.61581 * 117.50201 * 18 17 14 21 21 C 1.53779 * 87.08402 * 139.98450 * 20 18 17 22 22 H 1.09000 * 113.61527 * 89.11480 * 21 20 18 23 23 C 1.50702 * 113.61542 * 220.02398 * 21 20 18 24 24 O 1.20820 * 120.00636 * 97.49641 * 23 21 20 25 25 O 1.34230 * 119.99521 * 277.49201 * 23 21 20 26 26 C 1.53784 * 113.61569 * 214.99981 * 18 17 14 27 27 C 1.38235 * 119.99781 * 0.25577 * 13 12 11 28 28 C 1.38231 * 120.00280 * 269.98793 * 10 9 7 29 29 H 0.97001 * 119.99874 * 359.97438 * 1 2 3 30 30 H 1.09003 * 109.46480 * 60.00242 * 9 7 2 31 31 H 1.08996 * 109.47249 * 300.00530 * 9 7 2 32 32 H 1.07992 * 120.00671 * 359.97438 * 11 10 9 33 33 H 1.07997 * 120.00542 * 179.97438 * 12 11 10 34 34 H 0.97009 * 120.00161 * 244.99747 * 17 14 13 35 35 H 1.09006 * 113.61307 * 25.43652 * 20 18 17 36 36 H 1.09007 * 113.61642 * 254.53409 * 20 18 17 37 37 H 0.96705 * 116.99863 * 179.97438 * 25 23 21 38 38 H 1.09004 * 113.61451 * 105.47149 * 26 18 17 39 39 H 1.08994 * 113.61477 * 334.56451 * 26 18 17 40 40 H 1.08005 * 120.00014 * 179.73055 * 27 13 12 41 41 H 1.08002 * 120.00295 * 359.97438 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1942 -0.0011 10 6 4.0139 -2.6149 -0.0010 11 6 4.2438 -3.2667 -1.1982 12 6 4.7041 -4.5702 -1.1982 13 6 4.9340 -5.2221 -0.0009 14 16 5.5201 -6.8837 -0.0009 15 8 5.1402 -7.4432 -1.2506 16 8 5.1401 -7.4432 1.2489 17 7 7.1748 -6.8197 -0.0008 18 6 7.8860 -6.2557 1.1491 19 1 7.2317 -5.7029 1.8231 20 6 8.7972 -7.2659 1.8659 21 6 9.8186 -6.1251 2.0077 22 1 9.6926 -5.5366 2.9165 23 6 11.2440 -6.5596 1.7830 24 8 11.7629 -6.3953 0.7044 25 8 11.9372 -7.1291 2.7815 26 6 9.1651 -5.4917 0.7680 27 6 4.6985 -4.5722 1.1962 28 6 4.2450 -3.2663 1.1961 29 1 -0.4850 0.8401 0.0004 30 1 3.8751 -0.6805 0.8889 31 1 3.8745 -0.6801 -0.8910 32 1 4.0630 -2.7580 -2.1334 33 1 4.8833 -5.0797 -2.1334 34 1 7.6733 -7.1558 -0.7621 35 1 9.1371 -8.0791 1.2245 36 1 8.3978 -7.6152 2.8181 37 1 12.8480 -7.3916 2.5896 38 1 9.0627 -4.4085 0.8338 39 1 9.6056 -5.8198 -0.1735 40 1 4.8740 -5.0829 2.1315 41 1 4.0659 -2.7568 2.1315 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594610480.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:16 Heat of formation + Delta-G solvation = -154.843826 kcal Electronic energy + Delta-G solvation = -26474.199847 eV Core-core repulsion = 22445.202555 eV Total energy + Delta-G solvation = -4028.997292 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.65374 -40.23294 -39.48364 -38.28961 -37.02626 -36.95226 -35.53140 -34.12521 -33.52965 -31.94450 -29.69474 -27.49193 -26.69274 -25.26793 -23.76497 -22.91958 -22.29957 -20.95125 -20.33792 -19.21866 -19.02199 -18.95771 -18.33757 -18.08516 -16.94722 -16.73837 -16.73451 -16.14126 -15.97511 -15.90276 -15.51045 -15.29506 -14.61995 -14.44770 -14.29590 -14.12014 -13.89505 -13.61397 -13.60910 -13.46116 -13.41745 -13.21486 -13.13825 -12.57376 -12.54545 -12.51090 -12.25195 -12.05463 -12.00981 -11.93317 -11.89081 -11.70364 -11.50105 -11.33819 -10.82216 -10.43001 -9.93735 -9.91191 -8.33030 -6.40169 -0.62200 -0.05793 0.41840 1.20095 1.36944 1.38339 1.49785 1.95044 2.26641 2.33044 2.55675 2.82755 3.01517 3.31771 3.38641 3.44047 3.74178 3.88558 3.90365 4.01040 4.10181 4.19876 4.47114 4.49218 4.50114 4.71963 4.75937 4.78265 4.81170 4.87664 5.00336 5.01453 5.06243 5.11714 5.19531 5.31315 5.42418 5.50370 5.65545 5.80183 5.96144 6.05923 6.19777 6.66601 7.02577 7.23753 8.83362 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.014833 B = 0.002696 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1887.262790 B =10382.043775 C =11586.627661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.008 3.992 3 Si 0.953 3.047 4 H -0.266 1.266 5 H -0.285 1.285 6 H -0.240 1.240 7 C -0.525 4.525 8 H 0.026 0.974 9 C 0.011 3.989 10 C -0.003 4.003 11 C -0.156 4.156 12 C -0.022 4.022 13 C -0.698 4.698 14 S 2.723 3.277 15 O -0.990 6.990 16 O -0.977 6.977 17 N -1.090 6.090 18 C 0.121 3.879 19 H 0.134 0.866 20 C -0.130 4.130 21 C -0.109 4.109 22 H 0.156 0.844 23 C 0.494 3.506 24 O -0.552 6.552 25 O -0.512 6.512 26 C -0.127 4.127 27 C -0.021 4.021 28 C -0.152 4.152 29 H 0.268 0.732 30 H 0.043 0.957 31 H 0.037 0.963 32 H 0.131 0.869 33 H 0.152 0.848 34 H 0.429 0.571 35 H 0.094 0.906 36 H 0.105 0.895 37 H 0.425 0.575 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.162 0.838 41 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.252 -13.317 5.423 29.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.189 4.189 3 Si 0.776 3.224 4 H -0.191 1.191 5 H -0.210 1.210 6 H -0.163 1.163 7 C -0.563 4.563 8 H 0.045 0.955 9 C -0.026 4.026 10 C -0.003 4.003 11 C -0.175 4.175 12 C -0.041 4.041 13 C -0.785 4.785 14 S 2.813 3.187 15 O -0.980 6.980 16 O -0.967 6.967 17 N -0.850 5.850 18 C 0.014 3.986 19 H 0.151 0.849 20 C -0.169 4.169 21 C -0.128 4.128 22 H 0.173 0.827 23 C 0.338 3.662 24 O -0.443 6.443 25 O -0.325 6.325 26 C -0.166 4.166 27 C -0.040 4.040 28 C -0.171 4.171 29 H 0.077 0.923 30 H 0.061 0.939 31 H 0.056 0.944 32 H 0.149 0.851 33 H 0.169 0.831 34 H 0.266 0.734 35 H 0.112 0.888 36 H 0.123 0.877 37 H 0.287 0.713 38 H 0.114 0.886 39 H 0.114 0.886 40 H 0.180 0.820 41 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 24.213 -13.758 5.366 28.361 hybrid contribution 0.381 1.351 -0.749 1.592 sum 24.593 -12.407 4.617 27.930 Atomic orbital electron populations 1.70061 1.08459 1.28437 1.51781 1.26015 0.95612 1.03553 0.93753 0.85616 0.79636 0.77795 0.79366 1.19089 1.21038 1.16280 1.21068 0.90573 0.93068 1.51581 0.95539 1.18828 0.94409 0.90781 0.98572 1.20585 0.88904 0.96791 0.94021 1.21342 1.01969 0.95784 0.98392 1.21014 0.92320 0.93505 0.97281 1.30793 1.21986 1.26190 0.99563 1.00872 0.72586 0.72850 0.72371 1.93542 1.82174 1.77179 1.45111 1.93554 1.82196 1.75878 1.45067 1.55262 1.24352 1.76997 1.28425 1.22472 0.93365 0.95595 0.87154 0.84859 1.23479 0.93877 0.96419 1.03161 1.22449 0.85965 1.01069 1.03345 0.82659 1.23532 0.89307 0.72535 0.80818 1.90724 1.71576 1.53912 1.28060 1.84526 1.32736 1.72222 1.43051 1.23421 0.93700 1.01867 0.97649 1.21106 0.92321 0.93428 0.97171 1.21371 1.01654 0.95764 0.98261 0.92256 0.93914 0.94429 0.85141 0.83064 0.73356 0.88785 0.87660 0.71303 0.88579 0.88587 0.82021 0.84559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.28 13.96 21.45 0.30 -57.98 16 2 C 0.01 0.46 5.47 84.65 0.46 0.92 16 3 Si 0.95 41.91 27.47 68.60 1.88 43.80 16 4 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 5 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 6 H -0.24 -9.48 6.54 99.48 0.65 -8.83 16 7 C -0.53 -29.33 9.65 25.60 0.25 -29.09 16 8 H 0.03 1.68 7.98 -2.91 -0.02 1.65 16 9 C 0.01 0.50 4.17 29.10 0.12 0.62 16 10 C 0.00 -0.10 5.07 -19.87 -0.10 -0.20 16 11 C -0.16 -5.42 9.70 22.27 0.22 -5.21 16 12 C -0.02 -0.65 9.52 22.27 0.21 -0.44 16 13 C -0.70 -18.81 5.95 22.27 0.13 -18.68 16 14 S 2.72 62.51 5.68 -56.49 -0.32 62.19 16 15 O -0.99 -28.58 17.28 -128.00 -2.21 -30.79 16 16 O -0.98 -26.40 17.04 -128.00 -2.18 -28.58 16 17 N -1.09 -15.76 5.79 -167.20 -0.97 -16.72 16 18 C 0.12 1.40 4.35 45.52 0.20 1.60 16 19 H 0.13 1.27 7.80 -2.39 -0.02 1.25 16 20 C -0.13 -1.22 7.43 31.12 0.23 -0.99 16 21 C -0.11 -0.98 4.26 -11.01 -0.05 -1.03 16 22 H 0.16 0.68 8.14 -2.39 -0.02 0.66 16 23 C 0.49 6.43 7.85 71.24 0.56 6.99 16 24 O -0.55 -11.14 16.66 21.98 0.37 -10.77 16 25 O -0.51 -4.47 13.42 -51.41 -0.69 -5.16 16 26 C -0.13 -1.39 7.19 31.12 0.22 -1.16 16 27 C -0.02 -0.58 9.28 22.27 0.21 -0.37 16 28 C -0.15 -5.03 9.70 22.27 0.22 -4.81 16 29 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 30 H 0.04 1.79 7.14 -2.39 -0.02 1.77 16 31 H 0.04 1.58 7.51 -2.39 -0.02 1.56 16 32 H 0.13 4.34 8.06 -2.91 -0.02 4.32 16 33 H 0.15 3.76 7.62 -2.91 -0.02 3.74 16 34 H 0.43 4.68 8.94 -96.73 -0.87 3.82 16 35 H 0.09 0.91 8.09 -2.38 -0.02 0.89 16 36 H 0.10 0.79 8.14 -2.38 -0.02 0.77 16 37 H 0.43 0.54 9.10 -74.05 -0.67 -0.13 16 38 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.10 1.26 7.43 -2.39 -0.02 1.24 16 40 H 0.16 3.36 7.61 -2.91 -0.02 3.33 16 41 H 0.14 4.20 8.06 -2.91 -0.02 4.18 16 Total: -1.00 -80.94 365.74 -1.45 -82.39 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: -0.51 Total: 13.47 kcal Atomic # 6 Polarization: -54.72 SS G_CDS: 2.88 Total: -51.84 kcal Atomic # 7 Polarization: -74.04 SS G_CDS: -0.67 Total: -74.71 kcal Atomic # 8 Polarization: -70.58 SS G_CDS: -4.72 Total: -75.30 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 1.88 Total: 43.80 kcal Atomic # 16 Polarization: 62.51 SS G_CDS: -0.32 Total: 62.19 kcal Total: -80.94 -1.45 -82.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594610480.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.454 kcal (2) G-P(sol) polarization free energy of solvation -80.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds