Wall clock time and date at job start Tue Mar 31 2020 22:03:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86801 * 119.99862 * 2 1 4 4 H 1.48497 * 109.46948 * 239.99976 * 3 2 1 5 5 H 1.48497 * 109.47494 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.46897 * 120.00402 * 3 2 1 7 7 C 1.39940 * 119.99630 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99357 * 165.96427 * 7 2 1 9 9 C 1.41394 * 120.00334 * 345.95950 * 7 2 1 10 10 C 1.40734 * 120.24369 * 331.04589 * 9 7 2 11 11 C 1.37597 * 119.74058 * 180.27475 * 10 9 7 12 12 C 1.38656 * 120.25464 * 359.70259 * 11 10 9 13 13 C 1.38622 * 120.49687 * 0.02562 * 12 11 10 14 14 C 1.37636 * 120.24781 * 359.97438 * 13 12 11 15 15 S 1.76197 * 120.12703 * 180.02562 * 14 13 12 16 16 O 1.42098 * 106.40197 * 131.22250 * 15 14 13 17 17 O 1.42099 * 106.40094 * 358.30290 * 15 14 13 18 18 N 1.65603 * 107.21890 * 244.76379 * 15 14 13 19 19 C 1.46493 * 119.99778 * 64.41528 * 18 15 14 20 20 C 1.53007 * 109.47036 * 159.73100 * 19 18 15 21 21 C 1.50699 * 112.84699 * 288.75680 * 20 19 18 22 22 O 1.20829 * 119.99659 * 118.74549 * 21 20 19 23 23 O 1.34225 * 120.00388 * 298.73799 * 21 20 19 24 24 C 1.53778 * 113.61363 * 157.45016 * 20 19 18 25 25 C 1.53780 * 87.07815 * 220.01877 * 24 20 19 26 26 C 1.53778 * 87.08516 * 25.43311 * 25 24 20 27 27 H 0.96998 * 119.99548 * 359.97438 * 1 2 3 28 28 H 1.08003 * 120.13015 * 359.97438 * 10 9 7 29 29 H 1.08003 * 119.87078 * 179.71766 * 11 10 9 30 30 H 1.07994 * 119.75137 * 180.02562 * 12 11 10 31 31 H 1.07994 * 119.87218 * 180.02562 * 13 12 11 32 32 H 0.97000 * 119.99976 * 244.41172 * 18 15 14 33 33 H 1.08997 * 109.47590 * 39.73299 * 19 18 15 34 34 H 1.08999 * 109.47363 * 279.73051 * 19 18 15 35 35 H 0.96701 * 117.00563 * 179.97438 * 23 21 20 36 36 H 1.08998 * 113.61375 * 334.56358 * 24 20 19 37 37 H 1.09000 * 113.61332 * 105.47219 * 24 20 19 38 38 H 1.09003 * 113.61605 * 270.88009 * 25 24 20 39 39 H 1.08999 * 113.61695 * 139.98497 * 25 24 20 40 40 H 1.08995 * 113.61993 * 220.02068 * 26 25 24 41 41 H 1.09000 * 113.61207 * 89.11434 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 3.0960 1.6964 -1.2125 5 1 1.2773 2.7465 -0.0006 6 1 3.0961 1.6964 1.2125 7 6 2.0079 -1.2120 -0.0005 8 1 3.0638 -1.2258 -0.2274 9 6 1.3326 -2.4183 0.2960 10 6 0.2102 -2.4121 1.1450 11 6 -0.4357 -3.5929 1.4311 12 6 0.0115 -4.7848 0.8816 13 6 1.1126 -4.8019 0.0396 14 6 1.7742 -3.6328 -0.2605 15 16 3.1729 -3.6581 -1.3316 16 8 2.9610 -2.6331 -2.2926 17 8 3.3862 -5.0189 -1.6809 18 7 4.4856 -3.1943 -0.4348 19 6 4.9400 -4.0257 0.6825 20 6 6.3950 -3.6861 1.0121 21 6 7.3613 -4.1707 -0.0379 22 8 8.0470 -3.3784 -0.6396 23 8 7.4604 -5.4825 -0.3046 24 6 6.8044 -4.0574 2.4471 25 6 7.5880 -2.7347 2.4819 26 6 6.6087 -2.2174 1.4150 27 1 -0.4849 0.8401 0.0004 28 1 -0.1398 -1.4849 1.5741 29 1 -1.2945 -3.5912 2.0860 30 1 -0.5018 -5.7068 1.1113 31 1 1.4520 -5.7359 -0.3831 32 1 4.9535 -2.3722 -0.6493 33 1 4.8661 -5.0775 0.4064 34 1 4.3156 -3.8345 1.5552 35 1 8.0937 -5.7453 -0.9864 36 1 5.9682 -4.0879 3.1456 37 1 7.4384 -4.9421 2.5052 38 1 8.6141 -2.8255 2.1254 39 1 7.5147 -2.2085 3.4337 40 1 7.0846 -1.6168 0.6399 41 1 5.7190 -1.7450 1.8314 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594611186.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:02 Heat of formation + Delta-G solvation = -132.533938 kcal Electronic energy + Delta-G solvation = -28459.753652 eV Core-core repulsion = 24431.723789 eV Total energy + Delta-G solvation = -4028.029863 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.04265 -38.32022 -37.61551 -36.24726 -36.07030 -34.84753 -34.33011 -33.86784 -30.25837 -29.59910 -28.25644 -25.81040 -25.56720 -24.29228 -22.22176 -21.68396 -21.16633 -19.41418 -18.67787 -17.89148 -17.72747 -17.04218 -16.62397 -16.22812 -15.70856 -15.52385 -15.28030 -14.66182 -14.47573 -14.29689 -13.95104 -13.50481 -13.29354 -13.20322 -12.78091 -12.73848 -12.55498 -12.23883 -11.92537 -11.58196 -11.57011 -11.31997 -11.28845 -11.17146 -11.12736 -11.09935 -11.02847 -10.75697 -10.56396 -10.48739 -10.45147 -10.32433 -9.92514 -9.50692 -9.43290 -8.84578 -8.06412 -7.63747 -7.06927 -4.78531 1.49469 2.14522 2.31531 2.71441 2.92273 2.95058 2.97838 3.10304 3.75640 3.81172 4.26475 4.36456 4.42201 4.60019 4.65119 4.73880 5.10873 5.23033 5.29974 5.51526 5.58338 5.63345 5.64319 5.75629 5.85168 5.94122 6.00365 6.02290 6.20387 6.21695 6.23074 6.38873 6.45673 6.75259 6.90968 7.05267 7.27604 7.44068 7.48507 7.63006 7.77817 7.86140 7.86427 8.25220 8.47189 8.61592 9.87366 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.010939 B = 0.005275 C = 0.004427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2559.032976 B = 5306.367510 C = 6323.410868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.774 5.774 2 C 0.082 3.918 3 Si 0.911 3.089 4 H -0.256 1.256 5 H -0.274 1.274 6 H -0.259 1.259 7 C -0.448 4.448 8 H 0.087 0.913 9 C 0.188 3.812 10 C -0.158 4.158 11 C -0.076 4.076 12 C -0.250 4.250 13 C -0.002 4.002 14 C -0.775 4.775 15 S 2.699 3.301 16 O -0.962 6.962 17 O -0.996 6.996 18 N -1.124 6.124 19 C 0.144 3.856 20 C -0.092 4.092 21 C 0.508 3.492 22 O -0.512 6.512 23 O -0.508 6.508 24 C -0.115 4.115 25 C -0.145 4.145 26 C -0.121 4.121 27 H 0.289 0.711 28 H 0.121 0.879 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.108 0.892 32 H 0.413 0.587 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.409 0.591 36 H 0.103 0.897 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.085 0.915 41 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.748 -3.896 6.664 13.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.139 4.139 3 Si 0.734 3.266 4 H -0.180 1.180 5 H -0.199 1.199 6 H -0.183 1.183 7 C -0.476 4.476 8 H 0.105 0.895 9 C 0.183 3.817 10 C -0.178 4.178 11 C -0.094 4.094 12 C -0.271 4.271 13 C -0.022 4.022 14 C -0.871 4.871 15 S 2.797 3.203 16 O -0.952 6.952 17 O -0.987 6.987 18 N -0.881 5.881 19 C 0.017 3.983 20 C -0.094 4.094 21 C 0.350 3.650 22 O -0.400 6.400 23 O -0.320 6.320 24 C -0.153 4.153 25 C -0.182 4.182 26 C -0.158 4.158 27 H 0.100 0.900 28 H 0.139 0.861 29 H 0.112 0.888 30 H 0.113 0.887 31 H 0.126 0.874 32 H 0.246 0.754 33 H 0.106 0.894 34 H 0.102 0.898 35 H 0.268 0.732 36 H 0.122 0.878 37 H 0.096 0.904 38 H 0.098 0.902 39 H 0.096 0.904 40 H 0.104 0.896 41 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 10.402 -3.806 5.903 12.551 hybrid contribution 0.341 0.983 0.004 1.041 sum 10.744 -2.823 5.907 12.581 Atomic orbital electron populations 1.69784 1.07808 1.30330 1.31725 1.25933 0.94838 1.01785 0.91386 0.86278 0.80399 0.79273 0.80643 1.18025 1.19904 1.18281 1.19806 0.97413 0.91054 1.39339 0.89485 1.16978 0.89745 0.89667 0.85265 1.21432 0.98757 0.96740 1.00836 1.20893 0.97428 0.93468 0.97659 1.20486 1.02103 0.96854 1.07608 1.20262 0.93499 0.95187 0.93280 1.29847 1.26173 1.00612 1.30446 1.01132 0.73052 0.72418 0.73700 1.93552 1.85066 1.58314 1.58315 1.93450 1.86078 1.36421 1.82740 1.55749 1.49150 1.35744 1.47478 1.21080 0.90822 0.95681 0.90754 1.21886 0.93903 0.99938 0.93712 1.22640 0.80782 0.79887 0.81674 1.90697 1.43506 1.56069 1.49684 1.84528 1.62263 1.26734 1.58430 1.22977 1.01065 0.98551 0.92739 1.22915 0.98587 0.96752 0.99971 1.23009 1.00799 0.92993 0.99035 0.90035 0.86097 0.88825 0.88718 0.87401 0.75362 0.89380 0.89843 0.73206 0.87811 0.90441 0.90243 0.90416 0.89590 0.87498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.76 11.04 55.55 0.61 -18.15 16 2 C 0.08 1.94 5.19 -17.34 -0.09 1.85 16 3 Si 0.91 17.60 29.58 -169.99 -5.03 12.57 16 4 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 5 H -0.27 -5.14 7.11 56.52 0.40 -4.73 16 6 H -0.26 -4.73 7.11 56.52 0.40 -4.33 16 7 C -0.45 -10.91 7.63 -37.74 -0.29 -11.19 16 8 H 0.09 1.96 5.77 -52.48 -0.30 1.66 16 9 C 0.19 4.65 5.53 -106.82 -0.59 4.06 16 10 C -0.16 -3.79 8.66 -38.87 -0.34 -4.12 16 11 C -0.08 -1.65 10.02 -39.66 -0.40 -2.04 16 12 C -0.25 -5.32 10.05 -39.29 -0.39 -5.71 16 13 C 0.00 -0.05 9.53 -39.66 -0.38 -0.43 16 14 C -0.78 -18.09 5.92 -38.87 -0.23 -18.32 16 15 S 2.70 58.76 4.96 -107.50 -0.53 58.22 16 16 O -0.96 -24.16 16.63 -57.17 -0.95 -25.11 16 17 O -1.00 -22.53 16.40 -57.17 -0.94 -23.47 16 18 N -1.12 -19.51 4.94 -10.61 -0.05 -19.56 16 19 C 0.14 2.07 5.61 -4.04 -0.02 2.04 16 20 C -0.09 -1.13 0.96 -154.85 -0.15 -1.27 16 21 C 0.51 6.83 6.93 36.00 0.25 7.08 16 22 O -0.51 -8.03 16.66 -18.75 -0.31 -8.34 16 23 O -0.51 -5.75 13.42 -39.25 -0.53 -6.28 16 24 C -0.12 -1.08 7.22 -25.92 -0.19 -1.27 16 25 C -0.14 -1.36 7.80 -25.92 -0.20 -1.57 16 26 C -0.12 -1.40 6.34 -25.92 -0.16 -1.56 16 27 H 0.29 6.32 8.30 -40.82 -0.34 5.98 16 28 H 0.12 2.92 6.37 -52.48 -0.33 2.59 16 29 H 0.09 1.77 8.06 -52.48 -0.42 1.35 16 30 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 31 H 0.11 2.21 7.33 -52.49 -0.38 1.83 16 32 H 0.41 6.73 7.84 -34.47 -0.27 6.46 16 33 H 0.09 1.29 7.67 -51.93 -0.40 0.89 16 34 H 0.08 1.11 7.94 -51.93 -0.41 0.70 16 35 H 0.41 2.87 9.10 45.56 0.41 3.28 16 36 H 0.10 0.85 7.96 -51.93 -0.41 0.44 16 37 H 0.08 0.66 8.10 -51.93 -0.42 0.24 16 38 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.09 1.08 7.34 -51.93 -0.38 0.70 16 41 H 0.11 1.20 8.10 -51.93 -0.42 0.78 16 LS Contribution 356.55 15.07 5.37 5.37 Total: -1.00 -32.46 356.55 -9.69 -42.15 By element: Atomic # 1 Polarization: 19.20 SS G_CDS: -4.15 Total: 15.05 kcal Atomic # 6 Polarization: -29.28 SS G_CDS: -3.18 Total: -32.46 kcal Atomic # 7 Polarization: -38.27 SS G_CDS: 0.56 Total: -37.71 kcal Atomic # 8 Polarization: -60.46 SS G_CDS: -2.73 Total: -63.19 kcal Atomic # 14 Polarization: 17.60 SS G_CDS: -5.03 Total: 12.57 kcal Atomic # 16 Polarization: 58.76 SS G_CDS: -0.53 Total: 58.22 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.46 -9.69 -42.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594611186.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.385 kcal (2) G-P(sol) polarization free energy of solvation -32.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds