Wall clock time and date at job start Tue Mar 31 2020 22:03:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86801 * 119.99862 * 2 1 4 4 H 1.48497 * 109.46948 * 239.99976 * 3 2 1 5 5 H 1.48497 * 109.47494 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.46897 * 120.00402 * 3 2 1 7 7 C 1.39940 * 119.99630 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99357 * 165.96427 * 7 2 1 9 9 C 1.41394 * 120.00334 * 345.95950 * 7 2 1 10 10 C 1.40734 * 120.24369 * 331.04589 * 9 7 2 11 11 C 1.37597 * 119.74058 * 180.27475 * 10 9 7 12 12 C 1.38656 * 120.25464 * 359.70259 * 11 10 9 13 13 C 1.38622 * 120.49687 * 0.02562 * 12 11 10 14 14 C 1.37636 * 120.24781 * 359.97438 * 13 12 11 15 15 S 1.76197 * 120.12703 * 180.02562 * 14 13 12 16 16 O 1.42098 * 106.40197 * 131.22250 * 15 14 13 17 17 O 1.42099 * 106.40094 * 358.30290 * 15 14 13 18 18 N 1.65603 * 107.21890 * 244.76379 * 15 14 13 19 19 C 1.46493 * 119.99778 * 64.41528 * 18 15 14 20 20 C 1.53007 * 109.47036 * 159.73100 * 19 18 15 21 21 C 1.50699 * 112.84699 * 288.75680 * 20 19 18 22 22 O 1.20829 * 119.99659 * 118.74549 * 21 20 19 23 23 O 1.34225 * 120.00388 * 298.73799 * 21 20 19 24 24 C 1.53778 * 113.61363 * 157.45016 * 20 19 18 25 25 C 1.53780 * 87.07815 * 220.01877 * 24 20 19 26 26 C 1.53778 * 87.08516 * 25.43311 * 25 24 20 27 27 H 0.96998 * 119.99548 * 359.97438 * 1 2 3 28 28 H 1.08003 * 120.13015 * 359.97438 * 10 9 7 29 29 H 1.08003 * 119.87078 * 179.71766 * 11 10 9 30 30 H 1.07994 * 119.75137 * 180.02562 * 12 11 10 31 31 H 1.07994 * 119.87218 * 180.02562 * 13 12 11 32 32 H 0.97000 * 119.99976 * 244.41172 * 18 15 14 33 33 H 1.08997 * 109.47590 * 39.73299 * 19 18 15 34 34 H 1.08999 * 109.47363 * 279.73051 * 19 18 15 35 35 H 0.96701 * 117.00563 * 179.97438 * 23 21 20 36 36 H 1.08998 * 113.61375 * 334.56358 * 24 20 19 37 37 H 1.09000 * 113.61332 * 105.47219 * 24 20 19 38 38 H 1.09003 * 113.61605 * 270.88009 * 25 24 20 39 39 H 1.08999 * 113.61695 * 139.98497 * 25 24 20 40 40 H 1.08995 * 113.61993 * 220.02068 * 26 25 24 41 41 H 1.09000 * 113.61207 * 89.11434 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 3.0960 1.6964 -1.2125 5 1 1.2773 2.7465 -0.0006 6 1 3.0961 1.6964 1.2125 7 6 2.0079 -1.2120 -0.0005 8 1 3.0638 -1.2258 -0.2274 9 6 1.3326 -2.4183 0.2960 10 6 0.2102 -2.4121 1.1450 11 6 -0.4357 -3.5929 1.4311 12 6 0.0115 -4.7848 0.8816 13 6 1.1126 -4.8019 0.0396 14 6 1.7742 -3.6328 -0.2605 15 16 3.1729 -3.6581 -1.3316 16 8 2.9610 -2.6331 -2.2926 17 8 3.3862 -5.0189 -1.6809 18 7 4.4856 -3.1943 -0.4348 19 6 4.9400 -4.0257 0.6825 20 6 6.3950 -3.6861 1.0121 21 6 7.3613 -4.1707 -0.0379 22 8 8.0470 -3.3784 -0.6396 23 8 7.4604 -5.4825 -0.3046 24 6 6.8044 -4.0574 2.4471 25 6 7.5880 -2.7347 2.4819 26 6 6.6087 -2.2174 1.4150 27 1 -0.4849 0.8401 0.0004 28 1 -0.1398 -1.4849 1.5741 29 1 -1.2945 -3.5912 2.0860 30 1 -0.5018 -5.7068 1.1113 31 1 1.4520 -5.7359 -0.3831 32 1 4.9535 -2.3722 -0.6493 33 1 4.8661 -5.0775 0.4064 34 1 4.3156 -3.8345 1.5552 35 1 8.0937 -5.7453 -0.9864 36 1 5.9682 -4.0879 3.1456 37 1 7.4384 -4.9421 2.5052 38 1 8.6141 -2.8255 2.1254 39 1 7.5147 -2.2085 3.4337 40 1 7.0846 -1.6168 0.6399 41 1 5.7190 -1.7450 1.8314 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594611186.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:01 Heat of formation + Delta-G solvation = -155.044485 kcal Electronic energy + Delta-G solvation = -28460.729782 eV Core-core repulsion = 24431.723789 eV Total energy + Delta-G solvation = -4029.005994 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.02203 -39.37668 -39.24782 -38.05497 -37.10046 -36.68884 -35.75650 -35.47540 -32.01171 -31.35221 -29.33981 -27.33130 -26.62987 -25.41094 -23.42575 -23.13954 -22.90348 -20.36821 -20.25883 -19.48805 -18.93312 -18.58222 -18.09197 -17.48472 -17.11130 -16.97600 -16.64265 -16.03562 -15.85662 -15.53315 -15.18585 -15.01681 -14.90351 -14.59368 -14.43725 -13.86174 -13.66596 -13.37811 -13.34625 -13.21807 -13.00804 -12.95445 -12.84932 -12.77040 -12.67260 -12.58074 -12.45917 -12.16351 -11.99982 -11.63820 -11.45273 -11.36034 -11.32248 -11.14888 -11.11226 -10.31828 -9.82074 -9.41642 -8.80038 -6.59431 -0.20101 0.54703 0.99617 1.11386 1.37651 1.48291 1.53162 2.02491 2.16548 2.30428 2.64290 2.97604 3.31719 3.46213 3.53272 3.62802 3.85315 3.89672 4.20835 4.35063 4.40228 4.44355 4.52700 4.73065 4.76331 4.81486 4.87126 4.88695 5.02078 5.08647 5.10091 5.12834 5.15958 5.31228 5.43373 5.53635 5.56502 5.72975 5.82710 6.02731 6.09025 6.11178 6.48960 6.69012 6.84817 6.95002 8.17162 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.010939 B = 0.005275 C = 0.004427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2559.032976 B = 5306.367510 C = 6323.410868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.806 5.806 2 C 0.042 3.958 3 Si 0.969 3.031 4 H -0.265 1.265 5 H -0.265 1.265 6 H -0.240 1.240 7 C -0.476 4.476 8 H 0.094 0.906 9 C 0.166 3.834 10 C -0.184 4.184 11 C -0.074 4.074 12 C -0.248 4.248 13 C -0.015 4.015 14 C -0.789 4.789 15 S 2.717 3.283 16 O -1.002 7.002 17 O -1.007 7.007 18 N -1.115 6.115 19 C 0.137 3.863 20 C -0.098 4.098 21 C 0.507 3.493 22 O -0.541 6.541 23 O -0.507 6.507 24 C -0.103 4.103 25 C -0.135 4.135 26 C -0.128 4.128 27 H 0.295 0.705 28 H 0.111 0.889 29 H 0.123 0.877 30 H 0.128 0.872 31 H 0.122 0.878 32 H 0.418 0.582 33 H 0.086 0.914 34 H 0.096 0.904 35 H 0.427 0.573 36 H 0.120 0.880 37 H 0.089 0.911 38 H 0.075 0.925 39 H 0.096 0.904 40 H 0.070 0.930 41 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.433 -4.490 8.318 14.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.430 5.430 2 C -0.176 4.176 3 Si 0.789 3.211 4 H -0.190 1.190 5 H -0.189 1.189 6 H -0.163 1.163 7 C -0.504 4.504 8 H 0.111 0.889 9 C 0.161 3.839 10 C -0.204 4.204 11 C -0.092 4.092 12 C -0.268 4.268 13 C -0.035 4.035 14 C -0.883 4.883 15 S 2.814 3.186 16 O -0.992 6.992 17 O -0.998 6.998 18 N -0.875 5.875 19 C 0.012 3.988 20 C -0.101 4.101 21 C 0.350 3.650 22 O -0.431 6.431 23 O -0.320 6.320 24 C -0.141 4.141 25 C -0.172 4.172 26 C -0.165 4.165 27 H 0.106 0.894 28 H 0.129 0.871 29 H 0.141 0.859 30 H 0.146 0.854 31 H 0.140 0.860 32 H 0.253 0.747 33 H 0.104 0.896 34 H 0.114 0.886 35 H 0.288 0.712 36 H 0.138 0.862 37 H 0.108 0.892 38 H 0.094 0.906 39 H 0.115 0.885 40 H 0.089 0.911 41 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 11.079 -4.434 7.566 14.130 hybrid contribution 0.114 1.003 -0.528 1.139 sum 11.193 -3.431 7.038 13.660 Atomic orbital electron populations 1.69825 1.09027 1.31467 1.32707 1.26753 0.95548 1.04674 0.90651 0.85421 0.79347 0.75539 0.80805 1.18992 1.18872 1.16289 1.20098 0.97990 0.91779 1.40529 0.88855 1.17267 0.90416 0.90373 0.85816 1.21490 0.99667 0.97349 1.01856 1.21243 0.97730 0.92881 0.97364 1.20888 1.01502 0.97977 1.06442 1.20577 0.93879 0.95405 0.93629 1.30053 1.27193 1.00788 1.30313 1.00397 0.73252 0.71608 0.73306 1.93493 1.85950 1.59469 1.60305 1.93425 1.86340 1.36880 1.83119 1.55376 1.47671 1.36362 1.48073 1.21330 0.92551 0.95023 0.89945 1.21995 0.92072 1.00830 0.95229 1.22886 0.80498 0.80158 0.81416 1.90686 1.44848 1.56852 1.50708 1.84492 1.62779 1.25632 1.59069 1.23030 1.01608 0.98995 0.90480 1.22864 0.97797 0.96618 0.99945 1.23061 1.01559 0.92380 0.99529 0.89390 0.87096 0.85946 0.85436 0.85972 0.74718 0.89563 0.88623 0.71163 0.86190 0.89241 0.90591 0.88533 0.91125 0.87256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -39.75 11.04 21.83 0.24 -39.51 16 2 C 0.04 2.00 5.19 85.25 0.44 2.45 16 3 Si 0.97 35.91 29.58 68.60 2.03 37.94 16 4 H -0.27 -10.13 7.11 99.48 0.71 -9.43 16 5 H -0.26 -9.27 7.11 99.48 0.71 -8.56 16 6 H -0.24 -8.07 7.11 99.48 0.71 -7.36 16 7 C -0.48 -23.51 7.63 23.46 0.18 -23.33 16 8 H 0.09 4.29 5.77 -2.91 -0.02 4.27 16 9 C 0.17 8.27 5.53 -21.29 -0.12 8.15 16 10 C -0.18 -8.84 8.66 22.73 0.20 -8.64 16 11 C -0.07 -3.09 10.02 22.22 0.22 -2.87 16 12 C -0.25 -10.01 10.05 22.46 0.23 -9.78 16 13 C -0.02 -0.65 9.53 22.22 0.21 -0.44 16 14 C -0.79 -36.77 5.92 22.73 0.13 -36.64 16 15 S 2.72 118.93 4.96 -56.49 -0.28 118.65 16 16 O -1.00 -51.43 16.63 -128.00 -2.13 -53.56 16 17 O -1.01 -45.23 16.40 -128.00 -2.10 -47.33 16 18 N -1.11 -38.49 4.94 -187.50 -0.93 -39.42 16 19 C 0.14 3.80 5.61 86.38 0.48 4.28 16 20 C -0.10 -2.27 0.96 -52.40 -0.05 -2.32 16 21 C 0.51 13.10 6.93 71.24 0.49 13.60 16 22 O -0.54 -16.76 16.66 21.95 0.37 -16.40 16 23 O -0.51 -10.69 13.42 -51.37 -0.69 -11.38 16 24 C -0.10 -1.65 7.22 31.12 0.22 -1.43 16 25 C -0.13 -2.23 7.80 31.12 0.24 -1.99 16 26 C -0.13 -2.80 6.34 31.12 0.20 -2.60 16 27 H 0.30 13.10 8.30 -92.71 -0.77 12.33 16 28 H 0.11 5.47 6.37 -2.91 -0.02 5.45 16 29 H 0.12 4.34 8.06 -2.91 -0.02 4.32 16 30 H 0.13 4.26 8.06 -2.91 -0.02 4.23 16 31 H 0.12 4.83 7.33 -2.91 -0.02 4.81 16 32 H 0.42 13.73 7.84 -96.74 -0.76 12.97 16 33 H 0.09 2.42 7.67 -2.39 -0.02 2.40 16 34 H 0.10 2.42 7.94 -2.39 -0.02 2.40 16 35 H 0.43 5.37 9.10 -74.06 -0.67 4.70 16 36 H 0.12 1.56 7.96 -2.39 -0.02 1.54 16 37 H 0.09 1.25 8.10 -2.39 -0.02 1.23 16 38 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.07 1.76 7.34 -2.39 -0.02 1.74 16 41 H 0.11 2.32 8.10 -2.39 -0.02 2.30 16 Total: -1.00 -69.97 356.55 -0.73 -70.70 By element: Atomic # 1 Polarization: 42.21 SS G_CDS: -0.34 Total: 41.87 kcal Atomic # 6 Polarization: -64.66 SS G_CDS: 3.09 Total: -61.57 kcal Atomic # 7 Polarization: -78.24 SS G_CDS: -0.68 Total: -78.93 kcal Atomic # 8 Polarization: -124.12 SS G_CDS: -4.55 Total: -128.67 kcal Atomic # 14 Polarization: 35.91 SS G_CDS: 2.03 Total: 37.94 kcal Atomic # 16 Polarization: 118.93 SS G_CDS: -0.28 Total: 118.65 kcal Total: -69.97 -0.73 -70.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594611186.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.342 kcal (2) G-P(sol) polarization free energy of solvation -69.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds