Wall clock time and date at job start Tue Mar 31 2020 22:02:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86804 * 119.99804 * 2 1 4 4 H 1.48498 * 109.47358 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.46899 * 119.99612 * 3 2 1 6 6 H 1.48501 * 109.46797 * 239.99264 * 3 2 1 7 7 C 1.39947 * 120.00254 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00144 * 204.36370 * 7 2 1 9 9 C 1.41392 * 119.99480 * 24.36128 * 7 2 1 10 10 C 1.40731 * 120.24925 * 32.74624 * 9 7 2 11 11 C 1.37597 * 119.75107 * 180.02562 * 10 9 7 12 12 C 1.38662 * 120.24516 * 0.02562 * 11 10 9 13 13 C 1.38615 * 120.50062 * 359.95700 * 12 11 10 14 14 C 1.37640 * 120.24918 * 359.76064 * 13 12 11 15 15 S 1.76198 * 120.12816 * 180.27609 * 14 13 12 16 16 O 1.42095 * 106.40250 * 232.26537 * 15 14 13 17 17 O 1.42097 * 106.40242 * 5.18795 * 15 14 13 18 18 N 1.65603 * 107.21688 * 118.72693 * 15 14 13 19 19 C 1.46491 * 119.99982 * 266.12221 * 18 15 14 20 20 C 1.50696 * 110.43612 * 62.15766 * 19 18 15 21 21 O 1.20827 * 120.00208 * 139.02464 * 20 19 18 22 22 O 1.34231 * 120.00058 * 319.02792 * 20 19 18 23 23 C 1.54893 * 110.48743 * 299.47155 * 19 18 15 24 24 C 1.54886 * 102.75374 * 279.26518 * 23 19 18 25 25 C 1.54272 * 104.19317 * 322.06036 * 24 23 19 26 26 C 1.53867 * 106.59911 * 23.60513 * 25 24 23 27 27 H 0.96994 * 120.00245 * 182.33778 * 1 2 3 28 28 H 1.08005 * 120.12573 * 0.02562 * 10 9 7 29 29 H 1.08001 * 119.87741 * 180.02562 * 11 10 9 30 30 H 1.07999 * 119.74691 * 179.97438 * 12 11 10 31 31 H 1.08000 * 119.87500 * 180.02562 * 13 12 11 32 32 H 0.97006 * 119.99800 * 86.12154 * 18 15 14 33 33 H 0.96704 * 116.99690 * 179.97438 * 22 20 19 34 34 H 1.09004 * 110.75332 * 37.58369 * 23 19 18 35 35 H 1.08998 * 110.75701 * 160.94716 * 23 19 18 36 36 H 1.08993 * 110.49021 * 203.37711 * 24 23 19 37 37 H 1.09001 * 110.59410 * 80.78793 * 24 23 19 38 38 H 1.09005 * 110.02497 * 264.31969 * 25 24 23 39 39 H 1.09001 * 110.03397 * 142.89558 * 25 24 23 40 40 H 1.09005 * 110.03321 * 240.71941 * 26 25 24 41 41 H 1.09003 * 110.03413 * 119.29108 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 1.2772 2.7465 -0.0006 5 1 3.0959 1.6965 1.2126 6 1 3.0961 1.6963 -1.2124 7 6 2.0080 -1.2119 0.0005 8 1 3.0159 -1.2534 0.3864 9 6 1.3954 -2.3821 -0.5041 10 6 0.4771 -2.2995 -1.5672 11 6 -0.1134 -3.4448 -2.0500 12 6 0.1929 -4.6769 -1.4925 13 6 1.0962 -4.7702 -0.4452 14 6 1.7033 -3.6384 0.0498 15 16 2.8565 -3.7615 1.3763 16 8 2.4248 -2.8421 2.3699 17 8 3.0342 -5.1490 1.6259 18 7 4.3094 -3.1972 0.8167 19 6 5.2961 -4.1312 0.2690 20 6 4.7445 -4.8243 -0.9502 21 8 5.4508 -5.0051 -1.9137 22 8 3.4685 -5.2407 -0.9658 23 6 5.7158 -5.1670 1.3415 24 6 6.7587 -4.3874 2.1802 25 6 7.5355 -3.5551 1.1390 26 6 6.6056 -3.3924 -0.0760 27 1 -0.4850 -0.8393 0.0343 28 1 0.2367 -1.3408 -2.0027 29 1 -0.8181 -3.3838 -2.8661 30 1 -0.2756 -5.5706 -1.8773 31 1 1.3277 -5.7351 -0.0188 32 1 4.5070 -2.2481 0.8515 33 1 3.1599 -5.6798 -1.7702 34 1 4.8624 -5.4541 1.9560 35 1 6.1700 -6.0420 0.8766 36 1 7.4283 -5.0773 2.6935 37 1 6.2626 -3.7338 2.8977 38 1 8.4451 -4.0793 0.8456 39 1 7.7842 -2.5777 1.5526 40 1 7.0639 -3.8375 -0.9592 41 1 6.4030 -2.3360 -0.2523 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594611487.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:02:51 Heat of formation + Delta-G solvation = -150.808125 kcal Electronic energy + Delta-G solvation = -29720.336058 eV Core-core repulsion = 25691.513767 eV Total energy + Delta-G solvation = -4028.822291 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.51606 -38.03542 -37.78918 -36.41036 -35.69884 -34.92920 -34.10281 -33.01118 -30.22119 -29.53405 -28.80083 -27.98368 -25.36783 -23.31414 -21.81637 -21.31385 -20.81694 -19.75296 -18.75473 -18.29947 -18.03229 -17.16161 -16.68464 -16.14398 -15.65999 -15.18899 -14.99785 -14.82070 -14.54795 -14.19060 -13.88709 -13.42770 -13.37354 -13.12703 -12.72580 -12.44841 -12.28223 -12.05387 -11.65066 -11.57102 -11.42263 -11.35200 -11.25327 -11.22265 -11.10642 -11.01215 -10.90312 -10.75578 -10.56998 -10.52418 -10.35497 -10.29343 -9.85495 -9.58173 -9.23022 -8.96557 -8.16577 -7.79915 -7.50049 -4.86904 1.41662 2.23890 2.37207 2.61520 3.04781 3.11202 3.23032 3.26248 3.71524 3.85407 4.32238 4.35734 4.50433 4.72199 4.89891 5.06833 5.21300 5.40147 5.41212 5.44666 5.53779 5.64035 5.74815 5.88812 5.91478 5.95411 6.04410 6.05960 6.24379 6.27437 6.29903 6.45150 6.64833 6.74289 6.86248 7.04652 7.21865 7.30759 7.43918 7.54046 7.60311 7.79562 7.94878 8.11422 8.31127 8.55680 9.79910 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.011736 B = 0.006455 C = 0.005226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2385.157489 B = 4336.485051 C = 5357.025113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.774 5.774 2 C 0.045 3.955 3 Si 1.061 2.939 4 H -0.270 1.270 5 H -0.269 1.269 6 H -0.271 1.271 7 C -0.516 4.516 8 H 0.079 0.921 9 C 0.165 3.835 10 C -0.210 4.210 11 C -0.055 4.055 12 C -0.270 4.270 13 C 0.033 3.967 14 C -0.752 4.752 15 S 2.704 3.296 16 O -0.966 6.966 17 O -0.981 6.981 18 N -1.104 6.104 19 C 0.199 3.801 20 C 0.475 3.525 21 O -0.520 6.520 22 O -0.487 6.487 23 C -0.151 4.151 24 C -0.123 4.123 25 C -0.122 4.122 26 C -0.118 4.118 27 H 0.302 0.698 28 H 0.106 0.894 29 H 0.094 0.906 30 H 0.096 0.904 31 H 0.113 0.887 32 H 0.419 0.581 33 H 0.407 0.593 34 H 0.122 0.878 35 H 0.080 0.920 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.068 0.932 39 H 0.069 0.931 40 H 0.096 0.904 41 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.040 -4.571 0.190 11.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.179 4.179 3 Si 0.883 3.117 4 H -0.194 1.194 5 H -0.194 1.194 6 H -0.196 1.196 7 C -0.543 4.543 8 H 0.097 0.903 9 C 0.160 3.840 10 C -0.230 4.230 11 C -0.074 4.074 12 C -0.290 4.290 13 C 0.013 3.987 14 C -0.847 4.847 15 S 2.802 3.198 16 O -0.956 6.956 17 O -0.972 6.972 18 N -0.861 5.861 19 C 0.107 3.893 20 C 0.316 3.684 21 O -0.409 6.409 22 O -0.298 6.298 23 C -0.189 4.189 24 C -0.161 4.161 25 C -0.159 4.159 26 C -0.157 4.157 27 H 0.116 0.884 28 H 0.124 0.876 29 H 0.112 0.888 30 H 0.114 0.886 31 H 0.131 0.869 32 H 0.255 0.745 33 H 0.267 0.733 34 H 0.139 0.861 35 H 0.099 0.901 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.114 0.886 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 9.932 -3.280 1.148 10.523 hybrid contribution -0.373 -1.385 -1.553 2.114 sum 9.559 -4.665 -0.404 10.644 Atomic orbital electron populations 1.70460 1.08175 1.34551 1.26307 1.27036 0.95577 1.04324 0.91003 0.83690 0.76005 0.73592 0.78397 1.19391 1.19364 1.19621 1.20708 1.02693 0.94480 1.36451 0.90303 1.17050 0.88540 0.90361 0.88026 1.21236 1.04447 0.97173 1.00174 1.20828 0.96223 0.93365 0.96984 1.20493 1.07770 0.96378 1.04363 1.20232 0.90655 0.95702 0.92136 1.29864 1.27116 0.99894 1.27824 1.01080 0.72095 0.72267 0.74310 1.93557 1.80346 1.64846 1.56885 1.93352 1.85398 1.33106 1.85313 1.55956 1.32887 1.17060 1.80170 1.20519 0.89257 0.90292 0.89196 1.23864 0.80292 0.75538 0.88713 1.90647 1.59756 1.54650 1.35831 1.84933 1.27859 1.70575 1.46461 1.23469 1.01852 0.96565 0.97060 1.22371 0.97290 0.98657 0.97744 1.22137 0.98147 1.00638 0.95002 1.22460 0.92157 1.01020 1.00089 0.88440 0.87623 0.88783 0.88599 0.86893 0.74511 0.73251 0.86051 0.90106 0.90990 0.90999 0.91325 0.91201 0.88594 0.90004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -19.61 12.67 55.55 0.70 -18.90 16 2 C 0.05 1.09 4.92 -17.34 -0.09 1.00 16 3 Si 1.06 20.21 30.00 -169.99 -5.10 15.11 16 4 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 5 H -0.27 -4.86 7.11 56.52 0.40 -4.46 16 6 H -0.27 -4.85 7.11 56.52 0.40 -4.45 16 7 C -0.52 -12.50 7.52 -37.74 -0.28 -12.78 16 8 H 0.08 1.76 5.14 -52.49 -0.27 1.49 16 9 C 0.16 3.99 5.14 -106.82 -0.55 3.44 16 10 C -0.21 -4.93 7.99 -38.87 -0.31 -5.24 16 11 C -0.06 -1.16 10.02 -39.66 -0.40 -1.55 16 12 C -0.27 -5.37 10.05 -39.29 -0.39 -5.77 16 13 C 0.03 0.67 6.93 -39.66 -0.27 0.40 16 14 C -0.75 -16.85 4.71 -38.87 -0.18 -17.03 16 15 S 2.70 56.26 4.39 -107.50 -0.47 55.79 16 16 O -0.97 -23.54 16.94 -57.17 -0.97 -24.51 16 17 O -0.98 -19.95 12.06 -65.33 -0.79 -20.74 16 18 N -1.10 -18.90 5.08 0.94 0.00 -18.90 16 19 C 0.20 3.04 0.76 -131.32 -0.10 2.94 16 20 C 0.48 7.97 7.25 36.00 0.26 8.23 16 21 O -0.52 -9.32 16.23 -18.75 -0.30 -9.63 16 22 O -0.49 -8.05 6.34 -45.81 -0.29 -8.34 16 23 C -0.15 -2.11 5.63 -24.74 -0.14 -2.24 16 24 C -0.12 -1.40 6.79 -25.07 -0.17 -1.57 16 25 C -0.12 -1.26 6.80 -25.61 -0.17 -1.43 16 26 C -0.12 -1.50 5.96 -25.62 -0.15 -1.65 16 27 H 0.30 7.90 6.77 -40.82 -0.28 7.62 16 28 H 0.11 2.52 7.02 -52.48 -0.37 2.15 16 29 H 0.09 1.73 8.06 -52.49 -0.42 1.30 16 30 H 0.10 1.65 8.06 -52.49 -0.42 1.23 16 31 H 0.11 2.13 7.03 -52.49 -0.37 1.77 16 32 H 0.42 6.68 6.75 -34.47 -0.23 6.45 16 33 H 0.41 5.40 8.89 45.56 0.41 5.81 16 34 H 0.12 1.93 5.02 -51.93 -0.26 1.67 16 35 H 0.08 1.03 8.05 -51.93 -0.42 0.61 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.10 1.25 6.75 -51.93 -0.35 0.90 16 41 H 0.08 0.98 7.74 -51.93 -0.40 0.58 16 LS Contribution 333.35 15.07 5.02 5.02 Total: -1.00 -30.29 333.35 -9.02 -39.31 By element: Atomic # 1 Polarization: 22.89 SS G_CDS: -3.87 Total: 19.02 kcal Atomic # 6 Polarization: -30.29 SS G_CDS: -2.95 Total: -33.24 kcal Atomic # 7 Polarization: -38.51 SS G_CDS: 0.71 Total: -37.80 kcal Atomic # 8 Polarization: -60.87 SS G_CDS: -2.35 Total: -63.22 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.10 Total: 15.11 kcal Atomic # 16 Polarization: 56.26 SS G_CDS: -0.47 Total: 55.79 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.29 -9.02 -39.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594611487.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.496 kcal (2) G-P(sol) polarization free energy of solvation -30.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds