Wall clock time and date at job start Tue Mar 31 2020 22:02:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86804 * 119.99804 * 2 1 4 4 H 1.48498 * 109.47358 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.46899 * 119.99612 * 3 2 1 6 6 H 1.48501 * 109.46797 * 239.99264 * 3 2 1 7 7 C 1.39947 * 120.00254 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00144 * 204.36370 * 7 2 1 9 9 C 1.41392 * 119.99480 * 24.36128 * 7 2 1 10 10 C 1.40731 * 120.24925 * 32.74624 * 9 7 2 11 11 C 1.37597 * 119.75107 * 180.02562 * 10 9 7 12 12 C 1.38662 * 120.24516 * 0.02562 * 11 10 9 13 13 C 1.38615 * 120.50062 * 359.95700 * 12 11 10 14 14 C 1.37640 * 120.24918 * 359.76064 * 13 12 11 15 15 S 1.76198 * 120.12816 * 180.27609 * 14 13 12 16 16 O 1.42095 * 106.40250 * 232.26537 * 15 14 13 17 17 O 1.42097 * 106.40242 * 5.18795 * 15 14 13 18 18 N 1.65603 * 107.21688 * 118.72693 * 15 14 13 19 19 C 1.46491 * 119.99982 * 266.12221 * 18 15 14 20 20 C 1.50696 * 110.43612 * 62.15766 * 19 18 15 21 21 O 1.20827 * 120.00208 * 139.02464 * 20 19 18 22 22 O 1.34231 * 120.00058 * 319.02792 * 20 19 18 23 23 C 1.54893 * 110.48743 * 299.47155 * 19 18 15 24 24 C 1.54886 * 102.75374 * 279.26518 * 23 19 18 25 25 C 1.54272 * 104.19317 * 322.06036 * 24 23 19 26 26 C 1.53867 * 106.59911 * 23.60513 * 25 24 23 27 27 H 0.96994 * 120.00245 * 182.33778 * 1 2 3 28 28 H 1.08005 * 120.12573 * 0.02562 * 10 9 7 29 29 H 1.08001 * 119.87741 * 180.02562 * 11 10 9 30 30 H 1.07999 * 119.74691 * 179.97438 * 12 11 10 31 31 H 1.08000 * 119.87500 * 180.02562 * 13 12 11 32 32 H 0.97006 * 119.99800 * 86.12154 * 18 15 14 33 33 H 0.96704 * 116.99690 * 179.97438 * 22 20 19 34 34 H 1.09004 * 110.75332 * 37.58369 * 23 19 18 35 35 H 1.08998 * 110.75701 * 160.94716 * 23 19 18 36 36 H 1.08993 * 110.49021 * 203.37711 * 24 23 19 37 37 H 1.09001 * 110.59410 * 80.78793 * 24 23 19 38 38 H 1.09005 * 110.02497 * 264.31969 * 25 24 23 39 39 H 1.09001 * 110.03397 * 142.89558 * 25 24 23 40 40 H 1.09005 * 110.03321 * 240.71941 * 26 25 24 41 41 H 1.09003 * 110.03413 * 119.29108 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 1.2772 2.7465 -0.0006 5 1 3.0959 1.6965 1.2126 6 1 3.0961 1.6963 -1.2124 7 6 2.0080 -1.2119 0.0005 8 1 3.0159 -1.2534 0.3864 9 6 1.3954 -2.3821 -0.5041 10 6 0.4771 -2.2995 -1.5672 11 6 -0.1134 -3.4448 -2.0500 12 6 0.1929 -4.6769 -1.4925 13 6 1.0962 -4.7702 -0.4452 14 6 1.7033 -3.6384 0.0498 15 16 2.8565 -3.7615 1.3763 16 8 2.4248 -2.8421 2.3699 17 8 3.0342 -5.1490 1.6259 18 7 4.3094 -3.1972 0.8167 19 6 5.2961 -4.1312 0.2690 20 6 4.7445 -4.8243 -0.9502 21 8 5.4508 -5.0051 -1.9137 22 8 3.4685 -5.2407 -0.9658 23 6 5.7158 -5.1670 1.3415 24 6 6.7587 -4.3874 2.1802 25 6 7.5355 -3.5551 1.1390 26 6 6.6056 -3.3924 -0.0760 27 1 -0.4850 -0.8393 0.0343 28 1 0.2367 -1.3408 -2.0027 29 1 -0.8181 -3.3838 -2.8661 30 1 -0.2756 -5.5706 -1.8773 31 1 1.3277 -5.7351 -0.0188 32 1 4.5070 -2.2481 0.8515 33 1 3.1599 -5.6798 -1.7702 34 1 4.8624 -5.4541 1.9560 35 1 6.1700 -6.0420 0.8766 36 1 7.4283 -5.0773 2.6935 37 1 6.2626 -3.7338 2.8977 38 1 8.4451 -4.0793 0.8456 39 1 7.7842 -2.5777 1.5526 40 1 7.0639 -3.8375 -0.9592 41 1 6.4030 -2.3360 -0.2523 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594611487.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:02:50 Heat of formation + Delta-G solvation = -170.992982 kcal Electronic energy + Delta-G solvation = -29721.211339 eV Core-core repulsion = 25691.513767 eV Total energy + Delta-G solvation = -4029.697572 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.78201 -39.60123 -39.09934 -38.06600 -37.08806 -36.66701 -35.82835 -34.24775 -31.93557 -31.25451 -29.79541 -29.16219 -27.12424 -24.52368 -23.48259 -23.02074 -21.87494 -20.93682 -20.32532 -19.96931 -19.37681 -18.60303 -18.17002 -17.65806 -16.99320 -16.56397 -16.50003 -16.26724 -15.80737 -15.75500 -15.52820 -15.02743 -14.65356 -14.40706 -14.29082 -13.98866 -13.74273 -13.31686 -13.24250 -13.00375 -12.98457 -12.83778 -12.72972 -12.54941 -12.41827 -12.29904 -12.21840 -12.11198 -12.00101 -11.96063 -11.64492 -11.50430 -11.26289 -11.12968 -10.94780 -10.43690 -9.88780 -9.53890 -9.31915 -6.68575 -0.20282 0.50720 0.89539 1.06178 1.49545 1.62217 1.75808 2.02108 2.22681 2.30065 2.62226 3.00681 3.24091 3.31652 3.52166 3.75784 4.05497 4.15840 4.30798 4.35087 4.38039 4.45742 4.48832 4.52685 4.66751 4.76298 4.90991 4.95998 5.07759 5.10254 5.14366 5.25922 5.30894 5.34577 5.46178 5.49713 5.51431 5.65314 5.67284 5.88339 6.01900 6.06426 6.20987 6.56658 6.80958 6.86530 7.94714 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.011736 B = 0.006455 C = 0.005226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2385.157489 B = 4336.485051 C = 5357.025113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.804 5.804 2 C 0.009 3.991 3 Si 1.102 2.898 4 H -0.272 1.272 5 H -0.252 1.252 6 H -0.252 1.252 7 C -0.548 4.548 8 H 0.089 0.911 9 C 0.144 3.856 10 C -0.237 4.237 11 C -0.055 4.055 12 C -0.260 4.260 13 C 0.028 3.972 14 C -0.764 4.764 15 S 2.722 3.278 16 O -1.006 7.006 17 O -0.978 6.978 18 N -1.094 6.094 19 C 0.189 3.811 20 C 0.472 3.528 21 O -0.535 6.535 22 O -0.497 6.497 23 C -0.154 4.154 24 C -0.122 4.122 25 C -0.115 4.115 26 C -0.117 4.117 27 H 0.284 0.716 28 H 0.090 0.910 29 H 0.121 0.879 30 H 0.132 0.868 31 H 0.132 0.868 32 H 0.425 0.575 33 H 0.419 0.581 34 H 0.100 0.900 35 H 0.093 0.907 36 H 0.096 0.904 37 H 0.065 0.935 38 H 0.088 0.912 39 H 0.085 0.915 40 H 0.094 0.906 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.975 -5.445 -0.046 13.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C -0.209 4.209 3 Si 0.917 3.083 4 H -0.197 1.197 5 H -0.176 1.176 6 H -0.176 1.176 7 C -0.576 4.576 8 H 0.107 0.893 9 C 0.140 3.860 10 C -0.257 4.257 11 C -0.073 4.073 12 C -0.280 4.280 13 C 0.008 3.992 14 C -0.858 4.858 15 S 2.818 3.182 16 O -0.996 6.996 17 O -0.969 6.969 18 N -0.854 5.854 19 C 0.098 3.902 20 C 0.314 3.686 21 O -0.424 6.424 22 O -0.310 6.310 23 C -0.193 4.193 24 C -0.160 4.160 25 C -0.152 4.152 26 C -0.156 4.156 27 H 0.096 0.904 28 H 0.108 0.892 29 H 0.139 0.861 30 H 0.149 0.851 31 H 0.149 0.851 32 H 0.262 0.738 33 H 0.281 0.719 34 H 0.118 0.882 35 H 0.111 0.889 36 H 0.114 0.886 37 H 0.084 0.916 38 H 0.107 0.893 39 H 0.103 0.897 40 H 0.112 0.888 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 11.850 -4.179 0.896 12.598 hybrid contribution -0.994 -1.367 -1.543 2.289 sum 10.856 -5.546 -0.647 12.208 Atomic orbital electron populations 1.70578 1.09040 1.33263 1.29740 1.28379 0.95605 1.07481 0.89467 0.83243 0.75335 0.69868 0.79806 1.19683 1.17631 1.17593 1.20955 1.03447 0.95099 1.38115 0.89337 1.17347 0.88989 0.91225 0.88435 1.21261 1.05925 0.97517 1.00997 1.21182 0.95888 0.92982 0.97286 1.20916 1.06527 0.97201 1.03320 1.20527 0.90406 0.95937 0.92296 1.30193 1.27882 0.99930 1.27767 1.00446 0.72356 0.71853 0.73501 1.93506 1.81575 1.66069 1.58492 1.93361 1.85534 1.32801 1.85177 1.55591 1.32030 1.17736 1.79995 1.20926 0.89576 0.90612 0.89041 1.24188 0.80126 0.75318 0.88968 1.90636 1.60026 1.55378 1.36379 1.84892 1.28012 1.70690 1.47393 1.23487 1.01984 0.97052 0.96731 1.22419 0.96991 0.98893 0.97660 1.22152 0.98009 1.01626 0.93450 1.22536 0.90995 1.00903 1.01210 0.90386 0.89228 0.86127 0.85058 0.85068 0.73831 0.71919 0.88191 0.88861 0.88586 0.91634 0.89322 0.89663 0.88765 0.89476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -42.47 12.67 21.83 0.28 -42.20 16 2 C 0.01 0.44 4.92 85.26 0.42 0.86 16 3 Si 1.10 40.80 30.00 68.60 2.06 42.86 16 4 H -0.27 -10.09 7.11 99.48 0.71 -9.38 16 5 H -0.25 -8.59 7.11 99.48 0.71 -7.88 16 6 H -0.25 -8.45 7.11 99.48 0.71 -7.75 16 7 C -0.55 -27.18 7.52 23.46 0.18 -27.00 16 8 H 0.09 4.02 5.14 -2.91 -0.01 4.00 16 9 C 0.14 7.12 5.14 -21.29 -0.11 7.01 16 10 C -0.24 -11.32 7.99 22.73 0.18 -11.14 16 11 C -0.05 -2.24 10.02 22.22 0.22 -2.02 16 12 C -0.26 -9.78 10.05 22.46 0.23 -9.55 16 13 C 0.03 1.12 6.93 22.22 0.15 1.27 16 14 C -0.76 -34.19 4.71 22.73 0.11 -34.08 16 15 S 2.72 112.95 4.39 -56.49 -0.25 112.70 16 16 O -1.01 -49.84 16.94 -128.00 -2.17 -52.01 16 17 O -0.98 -39.11 12.06 -120.21 -1.45 -40.56 16 18 N -1.09 -36.71 5.08 -150.93 -0.77 -37.48 16 19 C 0.19 5.51 0.76 3.93 0.00 5.52 16 20 C 0.47 15.29 7.25 71.23 0.52 15.81 16 21 O -0.53 -18.48 16.23 21.96 0.36 -18.12 16 22 O -0.50 -15.87 6.34 -45.16 -0.29 -16.16 16 23 C -0.15 -4.01 5.63 31.89 0.18 -3.83 16 24 C -0.12 -2.44 6.79 31.67 0.22 -2.22 16 25 C -0.11 -1.99 6.80 31.32 0.21 -1.78 16 26 C -0.12 -2.71 5.96 31.32 0.19 -2.52 16 27 H 0.28 15.69 6.77 -92.71 -0.63 15.06 16 28 H 0.09 4.47 7.02 -2.91 -0.02 4.45 16 29 H 0.12 4.21 8.06 -2.91 -0.02 4.18 16 30 H 0.13 4.02 8.06 -2.91 -0.02 3.99 16 31 H 0.13 4.70 7.03 -2.91 -0.02 4.68 16 32 H 0.42 13.31 6.75 -96.74 -0.65 12.66 16 33 H 0.42 10.56 8.89 -74.05 -0.66 9.90 16 34 H 0.10 3.07 5.02 -2.39 -0.01 3.06 16 35 H 0.09 2.17 8.05 -2.39 -0.02 2.15 16 36 H 0.10 1.46 8.14 -2.39 -0.02 1.45 16 37 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.09 1.22 8.14 -2.38 -0.02 1.20 16 39 H 0.08 1.25 8.14 -2.39 -0.02 1.24 16 40 H 0.09 2.24 6.75 -2.38 -0.02 2.22 16 41 H 0.09 1.90 7.74 -2.39 -0.02 1.88 16 Total: -1.00 -66.57 333.35 0.40 -66.17 By element: Atomic # 1 Polarization: 48.55 SS G_CDS: -0.06 Total: 48.48 kcal Atomic # 6 Polarization: -66.38 SS G_CDS: 2.69 Total: -63.69 kcal Atomic # 7 Polarization: -79.18 SS G_CDS: -0.49 Total: -79.67 kcal Atomic # 8 Polarization: -123.30 SS G_CDS: -3.55 Total: -126.85 kcal Atomic # 14 Polarization: 40.80 SS G_CDS: 2.06 Total: 42.86 kcal Atomic # 16 Polarization: 112.95 SS G_CDS: -0.25 Total: 112.70 kcal Total: -66.57 0.40 -66.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594611487.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.822 kcal (2) G-P(sol) polarization free energy of solvation -66.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds