Wall clock time and date at job start Tue Mar 31 2020 22:27:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38348 * 119.85551 * 2 1 4 4 C 1.37975 * 120.14145 * 179.97438 * 3 2 1 5 5 C 1.39536 * 119.85459 * 0.02562 * 4 3 2 6 6 C 1.47815 * 120.14068 * 179.97438 * 5 4 3 7 7 C 1.32567 * 119.99668 * 44.54415 * 6 5 4 8 8 S 1.76202 * 120.00297 * 15.98698 * 7 6 5 9 9 O 1.42095 * 106.40214 * 232.08238 * 8 7 6 10 10 O 1.42106 * 106.39864 * 5.00011 * 8 7 6 11 11 N 1.65593 * 107.21787 * 118.53966 * 8 7 6 12 12 C 1.36941 * 119.99676 * 84.94284 * 11 8 7 13 13 H 1.07994 * 120.00207 * 314.98840 * 12 11 8 14 14 C 1.38823 * 119.99662 * 134.99258 * 12 11 8 15 15 N 1.31619 * 119.99844 * 0.27163 * 14 12 11 16 16 Si 1.86801 * 119.99859 * 180.27588 * 14 12 11 17 17 H 1.48498 * 109.47078 * 59.99850 * 16 14 12 18 18 H 1.48497 * 109.46936 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.46790 * 299.99892 * 16 14 12 20 20 C 1.46498 * 120.00316 * 264.94725 * 11 8 7 21 21 C 1.52991 * 109.47366 * 94.99939 * 20 11 8 22 22 C 1.50707 * 109.47113 * 180.02562 * 21 20 11 23 23 O 1.20826 * 120.00125 * 0.02562 * 22 21 20 24 24 O 1.34228 * 119.99694 * 179.97438 * 22 21 20 25 25 C 1.39535 * 119.71780 * 0.27552 * 5 4 3 26 26 C 1.37972 * 119.85474 * 359.42063 * 25 5 4 27 27 H 1.09001 * 109.46987 * 89.99676 * 1 2 3 28 28 H 1.08998 * 109.47295 * 209.99795 * 1 2 3 29 29 H 1.09001 * 109.47312 * 329.99803 * 1 2 3 30 30 H 1.07999 * 119.92734 * 359.97438 * 3 2 1 31 31 H 1.07997 * 120.07166 * 179.97438 * 4 3 2 32 32 H 1.07993 * 120.00198 * 224.53946 * 6 5 4 33 33 H 1.07997 * 119.99532 * 195.99007 * 7 6 5 34 34 H 0.97003 * 119.99625 * 179.97438 * 15 14 12 35 35 H 1.09003 * 109.47272 * 215.00283 * 20 11 8 36 36 H 1.08998 * 109.47078 * 334.99870 * 20 11 8 37 37 H 1.09000 * 109.47420 * 299.99646 * 21 20 11 38 38 H 1.09000 * 109.47442 * 60.00324 * 21 20 11 39 39 H 0.96704 * 116.99613 * 180.02562 * 24 22 21 40 40 H 1.08000 * 120.07120 * 179.72452 * 25 5 4 41 41 H 1.08002 * 119.93104 * 180.30481 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.1999 0.0000 4 6 3.5754 1.2068 0.0005 5 6 4.2761 0.0001 0.0005 6 6 5.7542 0.0001 0.0005 7 6 6.4170 0.8183 0.8059 8 16 5.5871 1.5900 2.1551 9 8 5.8530 2.9817 2.0467 10 8 4.2731 1.0495 2.1800 11 7 6.3294 1.0789 3.5442 12 6 7.4492 1.7228 3.9989 13 1 8.2402 1.9817 3.3107 14 6 7.5676 2.0428 5.3446 15 7 6.6060 1.7224 6.1842 16 14 9.0916 2.9281 5.9635 17 1 9.2200 4.2355 5.2712 18 1 8.9735 3.1527 7.4267 19 1 10.2925 2.1002 5.6846 20 6 5.7884 -0.0622 4.2867 21 6 6.5165 -1.3389 3.8616 22 6 5.9595 -2.5128 4.6250 23 8 5.0709 -2.3456 5.4265 24 8 6.4498 -3.7443 4.4138 25 6 3.5754 -1.2066 -0.0058 26 6 2.1957 -1.1998 0.0000 27 1 -0.3633 0.0001 -1.0277 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3634 0.8900 0.5139 30 1 1.6522 2.1331 -0.0004 31 1 4.1119 2.1440 0.0001 32 1 6.2942 -0.6666 -0.6554 33 1 7.4656 1.0119 0.6349 34 1 6.6889 1.9457 7.1246 35 1 5.9312 0.0988 5.3553 36 1 4.7242 -0.1628 4.0735 37 1 6.3737 -1.5000 2.7931 38 1 7.5807 -1.2384 4.0749 39 1 6.0605 -4.4658 4.9267 40 1 4.1120 -2.1439 -0.0104 41 1 1.6522 -2.1330 0.0001 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600398089.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:13 Heat of formation + Delta-G solvation = -104.393890 kcal Electronic energy + Delta-G solvation = -28224.567332 eV Core-core repulsion = 24197.757713 eV Total energy + Delta-G solvation = -4026.809619 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -39.76387 -39.22668 -36.20712 -36.05097 -35.49333 -34.89282 -34.30818 -31.88800 -31.13954 -30.65056 -29.99129 -26.49129 -25.22330 -23.13237 -22.75950 -22.02232 -20.52203 -20.06437 -18.48318 -17.75933 -17.39635 -16.63287 -16.16522 -15.83634 -15.49234 -15.39079 -15.09529 -14.75593 -14.44874 -14.16758 -13.93910 -13.58049 -13.25131 -13.18598 -12.89051 -12.73327 -12.57543 -12.22695 -12.18546 -12.00514 -11.36154 -11.15926 -11.09123 -11.06262 -11.02901 -10.90306 -10.84605 -10.72476 -10.69016 -10.25906 -10.24708 -10.06315 -9.88369 -9.70848 -9.00197 -8.49243 -7.95016 -7.81679 -6.22495 -4.17623 0.94208 1.58039 1.76942 2.18018 2.68758 3.20770 3.26343 3.28954 3.46366 4.03180 4.14056 4.46830 4.73786 4.79376 4.99781 5.03451 5.06745 5.17104 5.35905 5.45707 5.59195 5.60357 5.64895 5.71257 5.76430 5.88895 5.92568 5.98473 6.16320 6.27529 6.30449 6.32653 6.40854 6.64426 6.67535 6.76460 6.83045 6.85813 7.24984 7.26560 7.34610 7.86157 8.31820 8.38106 8.95286 9.31901 10.72463 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.011591 B = 0.004918 C = 0.003997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2415.094225 B = 5691.575648 C = 7003.838279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.073 4.073 3 C -0.118 4.118 4 C -0.043 4.043 5 C -0.090 4.090 6 C 0.028 3.972 7 C -0.731 4.731 8 S 2.621 3.379 9 O -0.975 6.975 10 O -0.975 6.975 11 N -0.837 5.837 12 C -0.300 4.300 13 H 0.087 0.913 14 C 0.047 3.953 15 N -0.860 5.860 16 Si 0.917 3.083 17 H -0.269 1.269 18 H -0.282 1.282 19 H -0.273 1.273 20 C 0.121 3.879 21 C -0.129 4.129 22 C 0.481 3.519 23 O -0.510 6.510 24 O -0.527 6.527 25 C -0.086 4.086 26 C -0.131 4.131 27 H 0.066 0.934 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.120 0.880 31 H 0.108 0.892 32 H 0.124 0.876 33 H 0.156 0.844 34 H 0.271 0.729 35 H 0.141 0.859 36 H 0.070 0.930 37 H 0.084 0.916 38 H 0.110 0.890 39 H 0.400 0.600 40 H 0.120 0.880 41 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.881 -8.277 -10.013 13.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.073 4.073 3 C -0.137 4.137 4 C -0.062 4.062 5 C -0.091 4.091 6 C 0.008 3.992 7 C -0.833 4.833 8 S 2.717 3.283 9 O -0.964 6.964 10 O -0.965 6.965 11 N -0.667 5.667 12 C -0.434 4.434 13 H 0.105 0.895 14 C -0.161 4.161 15 N -0.499 5.499 16 Si 0.743 3.257 17 H -0.194 1.194 18 H -0.208 1.208 19 H -0.198 1.198 20 C -0.006 4.006 21 C -0.169 4.169 22 C 0.323 3.677 23 O -0.397 6.397 24 O -0.339 6.339 25 C -0.104 4.104 26 C -0.149 4.149 27 H 0.085 0.915 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.138 0.862 31 H 0.126 0.874 32 H 0.142 0.858 33 H 0.174 0.826 34 H 0.082 0.918 35 H 0.158 0.842 36 H 0.089 0.911 37 H 0.102 0.898 38 H 0.128 0.872 39 H 0.258 0.742 40 H 0.138 0.862 41 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -4.735 -7.286 -10.007 13.253 hybrid contribution 1.379 -0.617 0.412 1.565 sum -3.356 -7.903 -9.595 12.876 Atomic orbital electron populations 1.20793 0.91582 1.02820 1.01813 1.19887 0.95698 0.93229 0.98504 1.20709 0.93584 0.97470 1.01893 1.20963 0.94825 0.95990 0.94410 1.19001 0.92180 0.94317 1.03596 1.21660 0.92091 0.92030 0.93398 1.34369 1.15020 1.15074 1.18863 1.04893 0.74110 0.74331 0.74922 1.93460 1.85449 1.30827 1.86691 1.93603 1.36068 1.80076 1.86740 1.52407 1.38973 1.38087 1.37258 1.19010 0.94737 1.35668 0.94026 0.89521 1.25593 0.98111 0.95543 0.96853 1.69586 1.32508 1.43450 1.04339 0.86164 0.81141 0.80465 0.77889 1.19387 1.20761 1.19843 1.21495 0.95012 0.80458 1.03668 1.22048 1.04244 0.91328 0.99327 1.23824 0.79745 0.83364 0.80762 1.90708 1.29456 1.85269 1.34308 1.84594 1.64427 1.18768 1.66074 1.20965 0.94169 0.96417 0.98862 1.20769 0.93909 0.97221 1.03033 0.91492 0.91664 0.91525 0.86159 0.87383 0.85808 0.82578 0.91762 0.84235 0.91119 0.89758 0.87203 0.74228 0.86231 0.86374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.21 10.00 36.00 0.36 -0.85 16 2 C -0.07 -1.04 5.88 -104.54 -0.62 -1.66 16 3 C -0.12 -1.87 9.68 -39.64 -0.38 -2.25 16 4 C -0.04 -0.75 6.33 -39.19 -0.25 -1.00 16 5 C -0.09 -1.49 4.03 -105.01 -0.42 -1.92 16 6 C 0.03 0.43 9.73 -37.57 -0.37 0.07 16 7 C -0.73 -13.03 10.12 28.83 0.29 -12.74 16 8 S 2.62 58.71 4.66 -107.50 -0.50 58.21 16 9 O -0.97 -25.16 17.32 -57.17 -0.99 -26.15 16 10 O -0.98 -22.07 11.35 -57.17 -0.65 -22.71 16 11 N -0.84 -19.90 2.81 -59.91 -0.17 -20.07 16 12 C -0.30 -7.52 8.92 -15.05 -0.13 -7.66 16 13 H 0.09 2.06 7.83 -52.49 -0.41 1.65 16 14 C 0.05 1.18 5.37 -17.43 -0.09 1.09 16 15 N -0.86 -22.82 10.80 55.49 0.60 -22.22 16 16 Si 0.92 19.74 29.55 -169.99 -5.02 14.71 16 17 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 18 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 19 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 20 C 0.12 2.76 4.58 -4.05 -0.02 2.75 16 21 C -0.13 -2.40 6.11 -27.88 -0.17 -2.57 16 22 C 0.48 8.50 8.33 36.01 0.30 8.80 16 23 O -0.51 -10.61 16.74 -18.75 -0.31 -10.93 16 24 O -0.53 -7.17 13.42 -39.25 -0.53 -7.70 16 25 C -0.09 -1.27 9.79 -39.20 -0.38 -1.65 16 26 C -0.13 -1.83 9.68 -39.64 -0.38 -2.21 16 27 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.64 8.08 -51.93 -0.42 0.22 16 29 H 0.07 0.69 8.08 -51.93 -0.42 0.27 16 30 H 0.12 1.64 8.06 -52.49 -0.42 1.22 16 31 H 0.11 1.90 7.23 -52.49 -0.38 1.52 16 32 H 0.12 1.48 8.06 -52.49 -0.42 1.05 16 33 H 0.16 2.53 8.06 -52.49 -0.42 2.11 16 34 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 35 H 0.14 3.57 5.14 -51.93 -0.27 3.30 16 36 H 0.07 1.66 6.83 -51.93 -0.35 1.30 16 37 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 38 H 0.11 1.97 8.14 -51.93 -0.42 1.55 16 39 H 0.40 3.58 9.10 45.56 0.41 3.99 16 40 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 41 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 LS Contribution 361.85 15.07 5.45 5.45 Total: -1.00 -33.02 361.85 -8.74 -41.76 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: -4.35 Total: 11.44 kcal Atomic # 6 Polarization: -19.53 SS G_CDS: -2.27 Total: -21.79 kcal Atomic # 7 Polarization: -42.72 SS G_CDS: 0.43 Total: -42.29 kcal Atomic # 8 Polarization: -65.01 SS G_CDS: -2.48 Total: -67.49 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -5.02 Total: 14.71 kcal Atomic # 16 Polarization: 58.71 SS G_CDS: -0.50 Total: 58.21 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.02 -8.74 -41.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600398089.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.629 kcal (2) G-P(sol) polarization free energy of solvation -33.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds