Wall clock time and date at job start Tue Mar 31 2020 22:27:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38348 * 119.85551 * 2 1 4 4 C 1.37975 * 120.14145 * 179.97438 * 3 2 1 5 5 C 1.39536 * 119.85459 * 0.02562 * 4 3 2 6 6 C 1.47815 * 120.14068 * 179.97438 * 5 4 3 7 7 C 1.32567 * 119.99668 * 44.54415 * 6 5 4 8 8 S 1.76202 * 120.00297 * 15.98698 * 7 6 5 9 9 O 1.42095 * 106.40214 * 232.08238 * 8 7 6 10 10 O 1.42106 * 106.39864 * 5.00011 * 8 7 6 11 11 N 1.65593 * 107.21787 * 118.53966 * 8 7 6 12 12 C 1.36941 * 119.99676 * 84.94284 * 11 8 7 13 13 H 1.07994 * 120.00207 * 314.98840 * 12 11 8 14 14 C 1.38823 * 119.99662 * 134.99258 * 12 11 8 15 15 N 1.31619 * 119.99844 * 0.27163 * 14 12 11 16 16 Si 1.86801 * 119.99859 * 180.27588 * 14 12 11 17 17 H 1.48498 * 109.47078 * 59.99850 * 16 14 12 18 18 H 1.48497 * 109.46936 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.46790 * 299.99892 * 16 14 12 20 20 C 1.46498 * 120.00316 * 264.94725 * 11 8 7 21 21 C 1.52991 * 109.47366 * 94.99939 * 20 11 8 22 22 C 1.50707 * 109.47113 * 180.02562 * 21 20 11 23 23 O 1.20826 * 120.00125 * 0.02562 * 22 21 20 24 24 O 1.34228 * 119.99694 * 179.97438 * 22 21 20 25 25 C 1.39535 * 119.71780 * 0.27552 * 5 4 3 26 26 C 1.37972 * 119.85474 * 359.42063 * 25 5 4 27 27 H 1.09001 * 109.46987 * 89.99676 * 1 2 3 28 28 H 1.08998 * 109.47295 * 209.99795 * 1 2 3 29 29 H 1.09001 * 109.47312 * 329.99803 * 1 2 3 30 30 H 1.07999 * 119.92734 * 359.97438 * 3 2 1 31 31 H 1.07997 * 120.07166 * 179.97438 * 4 3 2 32 32 H 1.07993 * 120.00198 * 224.53946 * 6 5 4 33 33 H 1.07997 * 119.99532 * 195.99007 * 7 6 5 34 34 H 0.97003 * 119.99625 * 179.97438 * 15 14 12 35 35 H 1.09003 * 109.47272 * 215.00283 * 20 11 8 36 36 H 1.08998 * 109.47078 * 334.99870 * 20 11 8 37 37 H 1.09000 * 109.47420 * 299.99646 * 21 20 11 38 38 H 1.09000 * 109.47442 * 60.00324 * 21 20 11 39 39 H 0.96704 * 116.99613 * 180.02562 * 24 22 21 40 40 H 1.08000 * 120.07120 * 179.72452 * 25 5 4 41 41 H 1.08002 * 119.93104 * 180.30481 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.1999 0.0000 4 6 3.5754 1.2068 0.0005 5 6 4.2761 0.0001 0.0005 6 6 5.7542 0.0001 0.0005 7 6 6.4170 0.8183 0.8059 8 16 5.5871 1.5900 2.1551 9 8 5.8530 2.9817 2.0467 10 8 4.2731 1.0495 2.1800 11 7 6.3294 1.0789 3.5442 12 6 7.4492 1.7228 3.9989 13 1 8.2402 1.9817 3.3107 14 6 7.5676 2.0428 5.3446 15 7 6.6060 1.7224 6.1842 16 14 9.0916 2.9281 5.9635 17 1 9.2200 4.2355 5.2712 18 1 8.9735 3.1527 7.4267 19 1 10.2925 2.1002 5.6846 20 6 5.7884 -0.0622 4.2867 21 6 6.5165 -1.3389 3.8616 22 6 5.9595 -2.5128 4.6250 23 8 5.0709 -2.3456 5.4265 24 8 6.4498 -3.7443 4.4138 25 6 3.5754 -1.2066 -0.0058 26 6 2.1957 -1.1998 0.0000 27 1 -0.3633 0.0001 -1.0277 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3634 0.8900 0.5139 30 1 1.6522 2.1331 -0.0004 31 1 4.1119 2.1440 0.0001 32 1 6.2942 -0.6666 -0.6554 33 1 7.4656 1.0119 0.6349 34 1 6.6889 1.9457 7.1246 35 1 5.9312 0.0988 5.3553 36 1 4.7242 -0.1628 4.0735 37 1 6.3737 -1.5000 2.7931 38 1 7.5807 -1.2384 4.0749 39 1 6.0605 -4.4658 4.9267 40 1 4.1120 -2.1439 -0.0104 41 1 1.6522 -2.1330 0.0001 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600398089.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:11 Heat of formation + Delta-G solvation = -126.557075 kcal Electronic energy + Delta-G solvation = -28225.528400 eV Core-core repulsion = 24197.757713 eV Total energy + Delta-G solvation = -4027.770687 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.15057 -40.39145 -37.89233 -37.73415 -36.92831 -36.58694 -35.69525 -33.70327 -32.25369 -31.83343 -31.64186 -27.57280 -27.01960 -24.80348 -23.98087 -23.20397 -21.90336 -21.41158 -20.25062 -19.17957 -18.92412 -18.22048 -17.81358 -17.32423 -16.90278 -16.70214 -16.41295 -16.19309 -16.10511 -15.51856 -15.29408 -14.97477 -14.50971 -14.41621 -14.39086 -14.25181 -13.82602 -13.73418 -13.36289 -13.11023 -13.05476 -12.87127 -12.81188 -12.67766 -12.46400 -12.44571 -12.27217 -12.22461 -12.03413 -11.97968 -11.75255 -11.57708 -11.49788 -11.04652 -10.84095 -9.68674 -9.66205 -9.13937 -8.10272 -6.11630 -0.40682 0.00876 0.59669 0.94427 1.29785 1.48799 1.53254 1.59220 2.12496 2.39587 2.75684 2.88539 3.01192 3.25400 3.56936 3.82443 3.90579 4.03468 4.07958 4.11619 4.25085 4.37460 4.50120 4.55424 4.61010 4.73685 4.77757 4.85592 4.88774 4.96977 5.02122 5.05312 5.21589 5.29960 5.40673 5.49388 5.50743 5.56376 5.66230 5.71704 6.03607 6.15280 6.48037 7.08120 7.09622 7.42419 8.83637 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.011591 B = 0.004918 C = 0.003997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2415.094225 B = 5691.575648 C = 7003.838279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.077 4.077 3 C -0.141 4.141 4 C -0.071 4.071 5 C -0.121 4.121 6 C 0.065 3.935 7 C -0.748 4.748 8 S 2.626 3.374 9 O -1.024 7.024 10 O -0.987 6.987 11 N -0.851 5.851 12 C -0.316 4.316 13 H 0.095 0.905 14 C -0.002 4.002 15 N -0.896 5.896 16 Si 0.975 3.025 17 H -0.274 1.274 18 H -0.283 1.283 19 H -0.253 1.253 20 C 0.123 3.877 21 C -0.124 4.124 22 C 0.492 3.508 23 O -0.549 6.549 24 O -0.508 6.508 25 C -0.086 4.086 26 C -0.138 4.138 27 H 0.089 0.911 28 H 0.078 0.922 29 H 0.065 0.935 30 H 0.128 0.872 31 H 0.091 0.909 32 H 0.175 0.825 33 H 0.175 0.825 34 H 0.269 0.731 35 H 0.111 0.889 36 H 0.052 0.948 37 H 0.109 0.891 38 H 0.116 0.884 39 H 0.425 0.575 40 H 0.152 0.848 41 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.441 -11.091 -11.952 16.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.077 4.077 3 C -0.159 4.159 4 C -0.091 4.091 5 C -0.122 4.122 6 C 0.045 3.955 7 C -0.857 4.857 8 S 2.728 3.272 9 O -1.014 7.014 10 O -0.976 6.976 11 N -0.681 5.681 12 C -0.450 4.450 13 H 0.112 0.888 14 C -0.205 4.205 15 N -0.536 5.536 16 Si 0.798 3.202 17 H -0.200 1.200 18 H -0.209 1.209 19 H -0.177 1.177 20 C -0.005 4.005 21 C -0.163 4.163 22 C 0.336 3.664 23 O -0.440 6.440 24 O -0.322 6.322 25 C -0.104 4.104 26 C -0.155 4.155 27 H 0.107 0.893 28 H 0.097 0.903 29 H 0.084 0.916 30 H 0.146 0.854 31 H 0.109 0.891 32 H 0.192 0.808 33 H 0.193 0.807 34 H 0.079 0.921 35 H 0.128 0.872 36 H 0.071 0.929 37 H 0.127 0.873 38 H 0.134 0.866 39 H 0.286 0.714 40 H 0.170 0.830 41 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -4.289 -10.113 -11.887 16.186 hybrid contribution 1.057 0.125 0.818 1.343 sum -3.233 -9.987 -11.069 15.255 Atomic orbital electron populations 1.20865 0.89110 1.03495 1.03420 1.20360 0.97680 0.92813 0.96836 1.20996 0.93414 0.98916 1.02598 1.21084 0.95810 0.96052 0.96111 1.19277 0.92974 0.94760 1.05148 1.22165 0.91774 0.90016 0.91531 1.33620 1.15710 1.17427 1.18938 1.04020 0.74112 0.73580 0.75489 1.93395 1.86185 1.34264 1.87558 1.93596 1.36839 1.79894 1.87293 1.52469 1.38817 1.38725 1.38096 1.19327 0.95710 1.35511 0.94416 0.88758 1.26384 1.00790 0.96217 0.97144 1.69770 1.34368 1.45115 1.04343 0.85283 0.78714 0.79186 0.77010 1.19950 1.20856 1.17740 1.21215 0.94606 0.82437 1.02197 1.21816 1.03804 0.89907 1.00819 1.23495 0.78877 0.84325 0.79750 1.90710 1.31279 1.86047 1.35931 1.84506 1.63704 1.17979 1.66011 1.21395 0.94813 0.96837 0.97329 1.21249 0.94093 0.98357 1.01844 0.89289 0.90286 0.91583 0.85408 0.89122 0.80755 0.80734 0.92131 0.87178 0.92915 0.87262 0.86556 0.71385 0.83048 0.83186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.13 10.00 71.24 0.71 -1.42 16 2 C -0.08 -2.05 5.88 -19.81 -0.12 -2.16 16 3 C -0.14 -4.44 9.68 22.23 0.22 -4.23 16 4 C -0.07 -2.51 6.33 22.52 0.14 -2.37 16 5 C -0.12 -3.77 4.03 -20.12 -0.08 -3.85 16 6 C 0.06 1.81 9.73 23.65 0.23 2.04 16 7 C -0.75 -25.59 10.12 66.67 0.67 -24.91 16 8 S 2.63 120.41 4.66 -56.49 -0.26 120.15 16 9 O -1.02 -55.26 17.32 -128.00 -2.22 -57.47 16 10 O -0.99 -45.78 11.35 -128.00 -1.45 -47.23 16 11 N -0.85 -41.47 2.81 -343.46 -0.97 -42.44 16 12 C -0.32 -16.22 8.92 84.04 0.75 -15.47 16 13 H 0.09 4.54 7.83 -2.91 -0.02 4.52 16 14 C 0.00 -0.09 5.37 84.86 0.46 0.36 16 15 N -0.90 -49.59 10.80 21.66 0.23 -49.36 16 16 Si 0.97 41.07 29.55 68.60 2.03 43.09 16 17 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 18 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 19 H -0.25 -9.76 7.11 99.48 0.71 -9.06 16 20 C 0.12 5.75 4.58 86.38 0.40 6.15 16 21 C -0.12 -4.46 6.11 29.85 0.18 -4.27 16 22 C 0.49 16.69 8.33 71.24 0.59 17.28 16 23 O -0.55 -22.80 16.74 21.96 0.37 -22.43 16 24 O -0.51 -12.23 13.42 -51.40 -0.69 -12.92 16 25 C -0.09 -2.24 9.79 22.52 0.22 -2.02 16 26 C -0.14 -3.40 9.68 22.23 0.22 -3.19 16 27 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.08 1.29 8.08 -2.39 -0.02 1.27 16 29 H 0.07 1.26 8.08 -2.39 -0.02 1.24 16 30 H 0.13 3.59 8.06 -2.91 -0.02 3.57 16 31 H 0.09 3.36 7.23 -2.91 -0.02 3.34 16 32 H 0.18 3.16 8.06 -2.91 -0.02 3.14 16 33 H 0.18 5.31 8.06 -2.91 -0.02 5.29 16 34 H 0.27 14.18 8.31 -92.71 -0.77 13.41 16 35 H 0.11 5.90 5.14 -2.39 -0.01 5.89 16 36 H 0.05 2.58 6.83 -2.39 -0.02 2.56 16 37 H 0.11 3.35 8.14 -2.39 -0.02 3.33 16 38 H 0.12 4.04 8.14 -2.39 -0.02 4.02 16 39 H 0.42 6.13 9.10 -74.05 -0.67 5.46 16 40 H 0.15 2.89 8.06 -2.91 -0.02 2.86 16 41 H 0.15 2.69 8.06 -2.91 -0.02 2.66 16 Total: -1.00 -75.95 361.85 2.02 -73.93 By element: Atomic # 1 Polarization: 32.34 SS G_CDS: 0.39 Total: 32.72 kcal Atomic # 6 Polarization: -42.64 SS G_CDS: 4.59 Total: -38.05 kcal Atomic # 7 Polarization: -91.06 SS G_CDS: -0.73 Total: -91.80 kcal Atomic # 8 Polarization: -136.06 SS G_CDS: -3.99 Total: -140.05 kcal Atomic # 14 Polarization: 41.07 SS G_CDS: 2.03 Total: 43.09 kcal Atomic # 16 Polarization: 120.41 SS G_CDS: -0.26 Total: 120.15 kcal Total: -75.95 2.02 -73.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600398089.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.628 kcal (2) G-P(sol) polarization free energy of solvation -75.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds