Wall clock time and date at job start Tue Mar 31 2020 21:58:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99796 * 2 1 4 4 H 1.48497 * 109.47125 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46948 * 299.99428 * 3 2 1 6 6 H 1.48504 * 109.46965 * 59.99430 * 3 2 1 7 7 C 1.37878 * 120.00509 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00046 * 180.02562 * 7 2 1 9 9 C 1.50708 * 119.99685 * 0.02562 * 7 2 1 10 10 C 1.50698 * 109.46837 * 179.97438 * 9 7 2 11 11 C 1.38227 * 120.00394 * 89.99694 * 10 9 7 12 12 C 1.38231 * 120.00226 * 179.97438 * 11 10 9 13 13 C 1.38230 * 120.00118 * 0.25438 * 12 11 10 14 14 S 1.76198 * 120.00321 * 179.72582 * 13 12 11 15 15 O 1.42095 * 106.40496 * 203.54409 * 14 13 12 16 16 O 1.42105 * 106.40414 * 336.46360 * 14 13 12 17 17 N 1.65598 * 107.21754 * 90.00209 * 14 13 12 18 18 C 1.46500 * 119.99947 * 65.63429 * 17 14 13 19 19 C 1.50689 * 112.85279 * 294.33377 * 18 17 14 20 20 O 1.20832 * 120.00142 * 144.37200 * 19 18 17 21 21 O 1.34233 * 120.00105 * 324.38055 * 19 18 17 22 22 C 1.53783 * 113.61459 * 163.13769 * 18 17 14 23 23 C 1.54045 * 86.98922 * 270.84092 * 22 18 17 24 24 C 1.53781 * 87.07505 * 334.56650 * 23 22 18 25 25 C 1.38239 * 119.99937 * 359.46912 * 13 12 11 26 26 C 1.38231 * 119.99733 * 0.53086 * 25 13 12 27 27 H 0.96993 * 120.00224 * 0.02562 * 1 2 3 28 28 H 1.08994 * 109.47016 * 59.99628 * 9 7 2 29 29 H 1.08997 * 109.46760 * 299.99379 * 9 7 2 30 30 H 1.08003 * 119.99771 * 359.97438 * 11 10 9 31 31 H 1.08004 * 120.00025 * 179.97438 * 12 11 10 32 32 H 0.97005 * 120.00247 * 245.63135 * 17 14 13 33 33 H 0.96700 * 116.99831 * 179.97438 * 21 19 18 34 34 H 1.09003 * 113.61616 * 25.43262 * 22 18 17 35 35 H 1.08999 * 113.61899 * 156.33516 * 22 18 17 36 36 H 1.09003 * 113.62005 * 220.02332 * 23 22 18 37 37 H 1.09003 * 113.69311 * 89.12406 * 23 22 18 38 38 H 1.08996 * 113.61740 * 270.87562 * 24 23 22 39 39 H 1.09010 * 113.69014 * 139.98896 * 24 23 22 40 40 H 1.07994 * 120.00263 * 180.29468 * 25 13 12 41 41 H 1.08000 * 120.00471 * 179.76221 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8902 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2305 -3.6445 0.0005 11 6 2.6798 -4.1698 1.1976 12 6 3.5777 -5.2208 1.1975 13 6 4.0305 -5.7430 0.0004 14 16 5.1806 -7.0778 0.0003 15 8 5.8567 -7.0249 -1.2483 16 8 5.8533 -7.0280 1.2511 17 7 4.3022 -8.4817 -0.0025 18 6 3.4715 -8.8236 -1.1598 19 6 2.3251 -7.8665 -1.3605 20 8 1.9672 -7.5782 -2.4780 21 8 1.7014 -7.3340 -0.2977 22 6 3.0536 -10.3029 -1.2026 23 6 4.3517 -10.5627 -1.9904 24 6 4.2797 -9.0938 -2.4399 25 6 3.5769 -5.2215 -1.1968 26 6 2.6789 -4.1705 -1.1967 27 1 -0.4850 0.8400 -0.0004 28 1 0.6248 -2.5571 -0.8896 29 1 0.6243 -2.5567 0.8903 30 1 2.3292 -3.7591 2.1329 31 1 3.9291 -5.6309 2.1329 32 1 4.3378 -9.0777 0.7620 33 1 0.9719 -6.7249 -0.4765 34 1 3.0333 -10.7795 -0.2225 35 1 2.1480 -10.4843 -1.7813 36 1 4.2321 -11.2754 -2.8064 37 1 5.2112 -10.7841 -1.3576 38 1 3.7087 -8.9451 -3.3564 39 1 5.2480 -8.5936 -2.4588 40 1 3.9269 -5.6326 -2.1320 41 1 2.3274 -3.7605 -2.1320 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601068742.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:58:50 Heat of formation + Delta-G solvation = -140.061721 kcal Electronic energy + Delta-G solvation = -28299.542718 eV Core-core repulsion = 24271.186426 eV Total energy + Delta-G solvation = -4028.356292 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.96223 -40.28006 -39.43383 -38.37245 -37.10545 -37.06507 -35.60917 -33.89367 -33.33499 -31.98448 -29.27751 -27.69867 -26.84403 -25.60900 -23.76968 -23.13307 -22.49284 -21.09199 -20.28631 -19.27713 -18.92919 -18.68353 -18.52927 -18.30305 -16.94015 -16.87527 -16.69524 -16.30043 -15.99040 -15.85724 -15.64697 -15.22929 -14.75772 -14.57942 -14.48765 -13.92846 -13.70748 -13.55820 -13.44130 -13.41811 -13.25960 -13.16233 -13.05477 -12.70293 -12.67359 -12.52432 -12.44328 -12.25173 -12.06463 -11.99711 -11.76137 -11.65432 -11.44404 -11.30193 -10.66944 -10.66776 -9.97564 -9.95565 -8.28413 -6.40727 -0.76200 -0.09190 0.37175 0.99659 1.35912 1.37659 1.50041 1.79428 1.96933 2.32995 2.48224 2.74977 3.04520 3.15217 3.26298 3.36935 3.76348 3.80660 3.89366 3.96691 4.08943 4.14388 4.44275 4.44729 4.66842 4.74623 4.76143 4.79472 4.88378 4.97057 5.08233 5.10283 5.16689 5.23362 5.25982 5.32486 5.41436 5.52813 5.66356 5.85351 5.90119 5.94891 6.08881 6.71372 6.84874 7.28455 8.81711 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.020464 B = 0.003395 C = 0.003168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.952613 B = 8246.214041 C = 8836.910655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.010 3.990 3 Si 0.963 3.037 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.274 1.274 7 C -0.533 4.533 8 H 0.053 0.947 9 C 0.049 3.951 10 C 0.005 3.995 11 C -0.146 4.146 12 C -0.002 4.002 13 C -0.695 4.695 14 S 2.716 3.284 15 O -0.972 6.972 16 O -0.973 6.973 17 N -1.067 6.067 18 C 0.145 3.855 19 C 0.468 3.532 20 O -0.528 6.528 21 O -0.499 6.499 22 C -0.106 4.106 23 C -0.123 4.123 24 C -0.158 4.158 25 C -0.024 4.024 26 C -0.150 4.150 27 H 0.267 0.733 28 H 0.011 0.989 29 H 0.017 0.983 30 H 0.132 0.868 31 H 0.157 0.843 32 H 0.440 0.560 33 H 0.415 0.585 34 H 0.115 0.885 35 H 0.107 0.893 36 H 0.098 0.902 37 H 0.102 0.898 38 H 0.103 0.897 39 H 0.097 0.903 40 H 0.133 0.867 41 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.684 -24.666 0.000 25.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.189 4.189 3 Si 0.787 3.213 4 H -0.193 1.193 5 H -0.202 1.202 6 H -0.199 1.199 7 C -0.571 4.571 8 H 0.071 0.929 9 C 0.012 3.988 10 C 0.005 3.995 11 C -0.165 4.165 12 C -0.021 4.021 13 C -0.782 4.782 14 S 2.807 3.193 15 O -0.962 6.962 16 O -0.963 6.963 17 N -0.830 5.830 18 C 0.053 3.947 19 C 0.308 3.692 20 O -0.416 6.416 21 O -0.311 6.311 22 C -0.145 4.145 23 C -0.161 4.161 24 C -0.197 4.197 25 C -0.044 4.044 26 C -0.169 4.169 27 H 0.076 0.924 28 H 0.029 0.971 29 H 0.036 0.964 30 H 0.150 0.850 31 H 0.174 0.826 32 H 0.280 0.720 33 H 0.275 0.725 34 H 0.134 0.866 35 H 0.125 0.875 36 H 0.117 0.883 37 H 0.120 0.880 38 H 0.122 0.878 39 H 0.115 0.885 40 H 0.151 0.849 41 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 7.661 -24.562 -0.346 25.731 hybrid contribution -1.378 2.215 0.045 2.609 sum 6.283 -22.347 -0.301 23.215 Atomic orbital electron populations 1.70050 1.07466 1.28053 1.50816 1.25841 0.95756 1.02896 0.94400 0.85429 0.78831 0.78939 0.78062 1.19273 1.20196 1.19941 1.21325 0.93041 0.91118 1.51627 0.92911 1.18260 0.92980 0.90670 0.96910 1.20716 0.93143 0.92087 0.93562 1.21262 0.99514 0.97688 0.98041 1.20932 0.91470 0.92948 0.96737 1.30628 1.24098 1.24056 0.99453 1.01131 0.72903 0.72543 0.72733 1.93528 1.71347 1.86532 1.44822 1.93567 1.71834 1.86623 1.44317 1.54884 1.62697 1.38872 1.26582 1.21403 0.87848 0.96155 0.89267 1.24145 0.83652 0.78999 0.82372 1.90734 1.65428 1.58779 1.26669 1.84544 1.48987 1.59034 1.38518 1.23298 1.00126 0.86835 1.04213 1.22897 0.97596 0.94704 1.00865 1.23787 1.01516 0.99485 0.94895 1.20812 0.92870 0.94219 0.96463 1.21127 0.99875 0.97855 0.98045 0.92399 0.97094 0.96435 0.84978 0.82565 0.72003 0.72472 0.86626 0.87481 0.88301 0.87992 0.87836 0.88466 0.84914 0.86377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.00 13.29 21.45 0.28 -53.72 16 2 C 0.01 0.56 5.46 84.65 0.46 1.03 16 3 Si 0.96 43.75 29.54 68.60 2.03 45.78 16 4 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 5 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 6 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 7 C -0.53 -29.60 9.09 25.60 0.23 -29.36 16 8 H 0.05 2.93 7.74 -2.91 -0.02 2.91 16 9 C 0.05 2.45 5.10 29.10 0.15 2.60 16 10 C 0.01 0.22 5.07 -19.87 -0.10 0.12 16 11 C -0.15 -5.17 9.70 22.27 0.22 -4.96 16 12 C 0.00 -0.05 9.50 22.27 0.21 0.16 16 13 C -0.69 -20.55 3.91 22.27 0.09 -20.46 16 14 S 2.72 67.66 5.70 -56.49 -0.32 67.34 16 15 O -0.97 -28.34 14.49 -128.00 -1.86 -30.20 16 16 O -0.97 -27.62 17.28 -128.00 -2.21 -29.83 16 17 N -1.07 -17.26 5.47 -153.10 -0.84 -18.10 16 18 C 0.15 2.48 1.25 3.38 0.00 2.48 16 19 C 0.47 10.65 4.91 71.23 0.35 10.99 16 20 O -0.53 -15.09 16.57 21.95 0.36 -14.73 16 21 O -0.50 -10.72 11.43 -51.45 -0.59 -11.31 16 22 C -0.11 -0.99 7.38 31.21 0.23 -0.76 16 23 C -0.12 -1.16 8.00 31.21 0.25 -0.91 16 24 C -0.16 -2.75 6.95 31.12 0.22 -2.54 16 25 C -0.02 -0.80 7.09 22.27 0.16 -0.64 16 26 C -0.15 -5.69 9.70 22.27 0.22 -5.47 16 27 H 0.27 14.62 8.31 -92.71 -0.77 13.85 16 28 H 0.01 0.58 8.08 -2.39 -0.02 0.56 16 29 H 0.02 0.92 8.09 -2.39 -0.02 0.90 16 30 H 0.13 4.49 8.06 -2.91 -0.02 4.47 16 31 H 0.16 3.80 7.62 -2.91 -0.02 3.78 16 32 H 0.44 4.14 8.79 -96.74 -0.85 3.29 16 33 H 0.42 8.26 9.10 -74.06 -0.67 7.58 16 34 H 0.12 0.52 8.09 -2.39 -0.02 0.50 16 35 H 0.11 0.95 8.09 -2.39 -0.02 0.94 16 36 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 37 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.10 1.94 7.35 -2.39 -0.02 1.92 16 39 H 0.10 2.04 5.68 -2.38 -0.01 2.03 16 40 H 0.13 4.16 7.62 -2.91 -0.02 4.14 16 41 H 0.12 4.57 8.06 -2.91 -0.02 4.55 16 Total: -1.00 -72.97 355.17 -0.89 -73.86 By element: Atomic # 1 Polarization: 19.06 SS G_CDS: -0.44 Total: 18.63 kcal Atomic # 6 Polarization: -50.41 SS G_CDS: 2.68 Total: -47.73 kcal Atomic # 7 Polarization: -71.26 SS G_CDS: -0.55 Total: -71.81 kcal Atomic # 8 Polarization: -81.77 SS G_CDS: -4.29 Total: -86.07 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Atomic # 16 Polarization: 67.66 SS G_CDS: -0.32 Total: 67.34 kcal Total: -72.97 -0.89 -73.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601068742.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.200 kcal (2) G-P(sol) polarization free energy of solvation -72.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds