Wall clock time and date at job start Tue Mar 31 2020 21:58:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00298 * 2 1 4 4 H 1.48497 * 109.46895 * 270.00331 * 3 2 1 5 5 H 1.48508 * 109.46990 * 29.99881 * 3 2 1 6 6 H 1.48499 * 109.47188 * 149.99996 * 3 2 1 7 7 C 1.37880 * 119.99768 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00056 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00001 * 0.02562 * 7 2 1 10 10 C 1.50700 * 109.46997 * 179.97438 * 9 7 2 11 11 C 1.38240 * 119.99973 * 89.99649 * 10 9 7 12 12 C 1.38234 * 119.99729 * 179.97438 * 11 10 9 13 13 C 1.38238 * 120.00440 * 0.02998 * 12 11 10 14 14 S 1.76199 * 120.00175 * 179.97438 * 13 12 11 15 15 O 1.42096 * 106.40321 * 336.45507 * 14 13 12 16 16 O 1.42108 * 106.39883 * 203.53516 * 14 13 12 17 17 N 1.65597 * 107.22117 * 89.99665 * 14 13 12 18 18 C 1.46499 * 119.99926 * 64.72196 * 17 14 13 19 19 C 1.53790 * 113.61572 * 244.41461 * 18 17 14 20 20 C 1.53955 * 87.02056 * 220.04843 * 19 18 17 21 21 C 1.50696 * 113.74481 * 139.93966 * 20 19 18 22 22 O 1.20823 * 120.00213 * 262.40393 * 21 20 19 23 23 O 1.34238 * 119.99615 * 82.40238 * 21 20 19 24 24 C 1.53781 * 113.61560 * 146.80752 * 18 17 14 25 25 C 1.38235 * 119.99428 * 0.24609 * 13 12 11 26 26 C 1.38234 * 119.99906 * 269.97371 * 10 9 7 27 27 H 0.96998 * 119.99801 * 0.02562 * 1 2 3 28 28 H 1.08997 * 109.47491 * 59.99738 * 9 7 2 29 29 H 1.09002 * 109.46840 * 299.99423 * 9 7 2 30 30 H 1.07993 * 120.00191 * 359.97438 * 11 10 9 31 31 H 1.08007 * 120.00126 * 179.97438 * 12 11 10 32 32 H 0.97001 * 120.00224 * 245.00409 * 17 14 13 33 33 H 1.08996 * 112.85022 * 15.60611 * 18 17 14 34 34 H 1.08995 * 113.61040 * 334.56887 * 19 18 17 35 35 H 1.09004 * 113.61344 * 105.46893 * 19 18 17 36 36 H 1.08994 * 113.53843 * 270.81410 * 20 19 18 37 37 H 0.96699 * 116.99366 * 179.97438 * 23 21 20 38 38 H 1.09003 * 113.61447 * 254.52836 * 24 18 17 39 39 H 1.09000 * 113.61448 * 25.43238 * 24 18 17 40 40 H 1.08004 * 119.99790 * 179.73496 * 25 13 12 41 41 H 1.07996 * 120.00062 * 0.02562 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2302 -3.6446 0.0005 11 6 2.6794 -4.1699 1.1977 12 6 3.5773 -5.2210 1.1977 13 6 4.0265 -5.7464 0.0005 14 16 5.1714 -7.0857 0.0005 15 8 5.8461 -7.0368 1.2502 16 8 5.8459 -7.0369 -1.2493 17 7 4.2878 -8.4861 0.0006 18 6 3.4387 -8.8165 -1.1466 19 6 1.9384 -8.8572 -0.8112 20 6 1.8494 -10.0925 -1.7257 21 6 0.9494 -11.1778 -1.1938 22 8 1.4218 -12.1154 -0.5959 23 8 -0.3773 -11.1028 -1.3842 24 6 3.3395 -10.3256 -1.4253 25 6 3.5816 -5.2173 -1.1966 26 6 2.6789 -4.1703 -1.1966 27 1 -0.4850 0.8400 -0.0004 28 1 0.6246 -2.5571 -0.8896 29 1 0.6240 -2.5567 0.8904 30 1 2.3289 -3.7592 2.1330 31 1 3.9286 -5.6312 2.1330 32 1 4.3292 -9.0857 0.7620 33 1 3.6724 -8.2236 -2.0308 34 1 1.7310 -9.0739 0.2367 35 1 1.3841 -7.9959 -1.1841 36 1 1.6474 -9.8484 -2.7686 37 1 -0.9137 -11.8228 -1.0250 38 1 3.9147 -10.6481 -2.2932 39 1 3.5159 -10.9446 -0.5456 40 1 3.9358 -5.6249 -2.1319 41 1 2.3280 -3.7599 -2.1319 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601068896.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:58:54 Heat of formation + Delta-G solvation = -132.153551 kcal Electronic energy + Delta-G solvation = -26618.175531 eV Core-core repulsion = 22590.162163 eV Total energy + Delta-G solvation = -4028.013368 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.05417 -38.93293 -38.79528 -37.16135 -36.41996 -35.81254 -33.71184 -33.37482 -31.58977 -30.61710 -27.46684 -26.88690 -26.17644 -23.75504 -22.49336 -22.22275 -20.95104 -20.25495 -19.46244 -18.57157 -17.97288 -17.43245 -17.25918 -16.47155 -16.22882 -15.84192 -15.32830 -15.21245 -15.01092 -14.41170 -14.39663 -13.92695 -13.59584 -13.24993 -13.14203 -12.93233 -12.91186 -12.71521 -12.26084 -12.07774 -11.99245 -11.92825 -11.74042 -11.65198 -11.51631 -11.43334 -11.28374 -10.97775 -10.93843 -10.73550 -10.54527 -10.51347 -9.82664 -9.74134 -9.59816 -8.62934 -8.56260 -8.42071 -6.19583 -4.24669 0.44242 1.28608 1.75575 1.79773 2.62582 3.04081 3.22669 3.29424 3.33702 3.70105 3.89842 3.96516 4.08970 4.24667 4.35411 4.41565 4.45367 4.83144 4.94792 5.13033 5.18655 5.19316 5.23919 5.30818 5.34048 5.49279 5.56870 5.68737 5.77373 5.87560 5.98564 6.13213 6.21038 6.28922 6.46587 6.72012 6.80271 6.87588 7.26022 7.39550 7.52136 7.55818 7.75513 8.10541 8.80171 9.40517 10.90430 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.013740 B = 0.002847 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2037.366044 B = 9830.966548 C =11270.326849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.061 3.939 3 Si 0.899 3.101 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.518 4.518 8 H 0.059 0.941 9 C 0.039 3.961 10 C 0.028 3.972 11 C -0.145 4.145 12 C -0.021 4.021 13 C -0.703 4.703 14 S 2.695 3.305 15 O -0.965 6.965 16 O -0.963 6.963 17 N -1.106 6.106 18 C 0.131 3.869 19 C -0.137 4.137 20 C -0.113 4.113 21 C 0.492 3.508 22 O -0.516 6.516 23 O -0.513 6.513 24 C -0.122 4.122 25 C -0.025 4.025 26 C -0.145 4.145 27 H 0.264 0.736 28 H 0.035 0.965 29 H 0.034 0.966 30 H 0.128 0.872 31 H 0.129 0.871 32 H 0.418 0.582 33 H 0.126 0.874 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.132 0.868 37 H 0.410 0.590 38 H 0.088 0.912 39 H 0.104 0.896 40 H 0.129 0.871 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.887 -21.617 -3.125 21.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.141 4.141 3 Si 0.726 3.274 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.556 4.556 8 H 0.077 0.923 9 C 0.002 3.998 10 C 0.027 3.973 11 C -0.164 4.164 12 C -0.040 4.040 13 C -0.792 4.792 14 S 2.788 3.212 15 O -0.955 6.955 16 O -0.953 6.953 17 N -0.862 5.862 18 C 0.023 3.977 19 C -0.176 4.176 20 C -0.132 4.132 21 C 0.334 3.666 22 O -0.404 6.404 23 O -0.325 6.325 24 C -0.162 4.162 25 C -0.045 4.045 26 C -0.164 4.164 27 H 0.074 0.926 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.146 0.854 31 H 0.147 0.853 32 H 0.253 0.747 33 H 0.144 0.856 34 H 0.114 0.886 35 H 0.113 0.887 36 H 0.150 0.850 37 H 0.268 0.732 38 H 0.107 0.893 39 H 0.122 0.878 40 H 0.147 0.853 41 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 3.044 -21.257 -3.266 21.721 hybrid contribution -0.781 0.613 0.578 1.149 sum 2.262 -20.644 -2.688 20.941 Atomic orbital electron populations 1.69944 1.06069 1.27149 1.49789 1.25001 0.94929 0.99399 0.94789 0.86480 0.79839 0.82771 0.78331 1.20435 1.21024 1.19692 1.20968 0.93100 0.89469 1.52076 0.92290 1.18538 0.92649 0.89532 0.99031 1.21120 0.92158 0.91945 0.92061 1.21250 0.99097 0.97158 0.98909 1.20765 0.93059 0.94479 0.95747 1.30281 1.25165 1.23863 0.99937 1.01653 0.73385 0.72717 0.73407 1.93573 1.71572 1.86456 1.43931 1.93566 1.70856 1.86482 1.44434 1.55580 1.63542 1.39637 1.27490 1.22209 0.89220 0.97200 0.89117 1.23564 0.97263 0.96509 1.00299 1.22380 0.93993 0.94196 1.02679 1.23245 0.81261 0.86059 0.76034 1.90722 1.76236 1.34218 1.39245 1.84571 1.20070 1.52992 1.74862 1.23372 0.92303 0.96328 1.04169 1.20766 0.93309 0.94758 0.95628 1.21239 0.99064 0.97211 0.98862 0.92612 0.94710 0.94732 0.85385 0.85297 0.74717 0.85626 0.88585 0.88723 0.85042 0.73157 0.89288 0.87755 0.85300 0.85341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.19 13.29 55.43 0.74 -24.45 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 20.88 29.54 -169.99 -5.02 15.86 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.52 -13.81 9.09 -34.44 -0.31 -14.13 16 8 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 9 C 0.04 0.93 5.10 -29.04 -0.15 0.79 16 10 C 0.03 0.54 5.07 -104.62 -0.53 0.01 16 11 C -0.15 -2.59 9.70 -39.58 -0.38 -2.97 16 12 C -0.02 -0.33 9.52 -39.58 -0.38 -0.70 16 13 C -0.70 -10.23 5.94 -39.58 -0.24 -10.47 16 14 S 2.70 34.44 5.71 -107.50 -0.61 33.82 16 15 O -0.97 -14.90 17.28 -57.17 -0.99 -15.88 16 16 O -0.96 -14.43 16.80 -57.17 -0.96 -15.39 16 17 N -1.11 -9.72 5.79 -4.20 -0.02 -9.75 16 18 C 0.13 0.98 4.42 -67.11 -0.30 0.69 16 19 C -0.14 -0.97 7.45 -25.82 -0.19 -1.17 16 20 C -0.11 -0.72 4.26 -90.87 -0.39 -1.11 16 21 C 0.49 4.00 7.86 36.00 0.28 4.28 16 22 O -0.52 -5.69 16.66 -18.75 -0.31 -6.00 16 23 O -0.51 -3.34 13.42 -39.28 -0.53 -3.87 16 24 C -0.12 -0.81 7.19 -25.92 -0.19 -1.00 16 25 C -0.03 -0.37 9.52 -39.58 -0.38 -0.75 16 26 C -0.14 -2.52 9.70 -39.58 -0.38 -2.90 16 27 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 28 H 0.03 0.86 8.08 -51.93 -0.42 0.44 16 29 H 0.03 0.86 8.09 -51.93 -0.42 0.44 16 30 H 0.13 2.19 8.06 -52.49 -0.42 1.77 16 31 H 0.13 1.73 7.62 -52.48 -0.40 1.33 16 32 H 0.42 2.90 8.93 -34.47 -0.31 2.59 16 33 H 0.13 0.87 7.77 -51.93 -0.40 0.46 16 34 H 0.10 0.70 8.10 -51.93 -0.42 0.28 16 35 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.13 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.41 1.06 9.10 45.56 0.41 1.47 16 38 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.10 0.76 7.44 -51.93 -0.39 0.38 16 40 H 0.13 1.58 7.61 -52.48 -0.40 1.18 16 41 H 0.13 2.12 8.06 -52.49 -0.42 1.69 16 LS Contribution 369.43 15.07 5.57 5.57 Total: -1.00 -35.38 369.43 -10.17 -45.54 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: -4.40 Total: 2.41 kcal Atomic # 6 Polarization: -24.24 SS G_CDS: -3.62 Total: -27.86 kcal Atomic # 7 Polarization: -34.91 SS G_CDS: 0.71 Total: -34.20 kcal Atomic # 8 Polarization: -38.36 SS G_CDS: -2.79 Total: -41.15 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Atomic # 16 Polarization: 34.44 SS G_CDS: -0.61 Total: 33.82 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -35.38 -10.17 -45.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601068896.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.609 kcal (2) G-P(sol) polarization free energy of solvation -35.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds