Wall clock time and date at job start Tue Mar 31 2020 21:58:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00298 * 2 1 4 4 H 1.48497 * 109.46895 * 270.00331 * 3 2 1 5 5 H 1.48508 * 109.46990 * 29.99881 * 3 2 1 6 6 H 1.48499 * 109.47188 * 149.99996 * 3 2 1 7 7 C 1.37880 * 119.99768 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00056 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00001 * 0.02562 * 7 2 1 10 10 C 1.50700 * 109.46997 * 179.97438 * 9 7 2 11 11 C 1.38240 * 119.99973 * 89.99649 * 10 9 7 12 12 C 1.38234 * 119.99729 * 179.97438 * 11 10 9 13 13 C 1.38238 * 120.00440 * 0.02998 * 12 11 10 14 14 S 1.76199 * 120.00175 * 179.97438 * 13 12 11 15 15 O 1.42096 * 106.40321 * 336.45507 * 14 13 12 16 16 O 1.42108 * 106.39883 * 203.53516 * 14 13 12 17 17 N 1.65597 * 107.22117 * 89.99665 * 14 13 12 18 18 C 1.46499 * 119.99926 * 64.72196 * 17 14 13 19 19 C 1.53790 * 113.61572 * 244.41461 * 18 17 14 20 20 C 1.53955 * 87.02056 * 220.04843 * 19 18 17 21 21 C 1.50696 * 113.74481 * 139.93966 * 20 19 18 22 22 O 1.20823 * 120.00213 * 262.40393 * 21 20 19 23 23 O 1.34238 * 119.99615 * 82.40238 * 21 20 19 24 24 C 1.53781 * 113.61560 * 146.80752 * 18 17 14 25 25 C 1.38235 * 119.99428 * 0.24609 * 13 12 11 26 26 C 1.38234 * 119.99906 * 269.97371 * 10 9 7 27 27 H 0.96998 * 119.99801 * 0.02562 * 1 2 3 28 28 H 1.08997 * 109.47491 * 59.99738 * 9 7 2 29 29 H 1.09002 * 109.46840 * 299.99423 * 9 7 2 30 30 H 1.07993 * 120.00191 * 359.97438 * 11 10 9 31 31 H 1.08007 * 120.00126 * 179.97438 * 12 11 10 32 32 H 0.97001 * 120.00224 * 245.00409 * 17 14 13 33 33 H 1.08996 * 112.85022 * 15.60611 * 18 17 14 34 34 H 1.08995 * 113.61040 * 334.56887 * 19 18 17 35 35 H 1.09004 * 113.61344 * 105.46893 * 19 18 17 36 36 H 1.08994 * 113.53843 * 270.81410 * 20 19 18 37 37 H 0.96699 * 116.99366 * 179.97438 * 23 21 20 38 38 H 1.09003 * 113.61447 * 254.52836 * 24 18 17 39 39 H 1.09000 * 113.61448 * 25.43238 * 24 18 17 40 40 H 1.08004 * 119.99790 * 179.73496 * 25 13 12 41 41 H 1.07996 * 120.00062 * 0.02562 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2302 -3.6446 0.0005 11 6 2.6794 -4.1699 1.1977 12 6 3.5773 -5.2210 1.1977 13 6 4.0265 -5.7464 0.0005 14 16 5.1714 -7.0857 0.0005 15 8 5.8461 -7.0368 1.2502 16 8 5.8459 -7.0369 -1.2493 17 7 4.2878 -8.4861 0.0006 18 6 3.4387 -8.8165 -1.1466 19 6 1.9384 -8.8572 -0.8112 20 6 1.8494 -10.0925 -1.7257 21 6 0.9494 -11.1778 -1.1938 22 8 1.4218 -12.1154 -0.5959 23 8 -0.3773 -11.1028 -1.3842 24 6 3.3395 -10.3256 -1.4253 25 6 3.5816 -5.2173 -1.1966 26 6 2.6789 -4.1703 -1.1966 27 1 -0.4850 0.8400 -0.0004 28 1 0.6246 -2.5571 -0.8896 29 1 0.6240 -2.5567 0.8904 30 1 2.3289 -3.7592 2.1330 31 1 3.9286 -5.6312 2.1330 32 1 4.3292 -9.0857 0.7620 33 1 3.6724 -8.2236 -2.0308 34 1 1.7310 -9.0739 0.2367 35 1 1.3841 -7.9959 -1.1841 36 1 1.6474 -9.8484 -2.7686 37 1 -0.9137 -11.8228 -1.0250 38 1 3.9147 -10.6481 -2.2932 39 1 3.5159 -10.9446 -0.5456 40 1 3.9358 -5.6249 -2.1319 41 1 2.3280 -3.7599 -2.1319 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601068896.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:58:53 Heat of formation + Delta-G solvation = -157.552377 kcal Electronic energy + Delta-G solvation = -26619.276907 eV Core-core repulsion = 22590.162163 eV Total energy + Delta-G solvation = -4029.114744 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.64773 -40.19515 -39.47698 -38.28531 -37.03204 -36.94711 -35.57823 -34.10909 -33.28921 -31.91726 -29.22269 -27.48581 -26.70505 -25.56674 -23.71442 -22.91894 -22.44110 -20.93683 -20.33566 -19.25164 -18.94201 -18.57775 -18.30672 -18.06916 -16.91521 -16.84025 -16.74136 -16.11986 -15.99337 -15.83145 -15.52111 -15.21213 -14.61548 -14.41245 -14.27307 -13.93742 -13.84446 -13.58456 -13.46538 -13.38762 -13.35884 -13.19955 -13.13318 -12.66844 -12.64507 -12.54506 -12.26149 -12.17573 -11.99851 -11.99454 -11.85666 -11.66025 -11.38993 -11.34471 -10.64377 -10.42969 -9.91713 -9.90622 -8.26317 -6.38749 -0.60712 -0.02270 0.44458 1.19183 1.38830 1.39442 1.50576 1.96447 2.26565 2.36018 2.59850 2.86278 3.06532 3.32032 3.37533 3.44473 3.73406 3.90807 3.92976 4.02817 4.19389 4.23687 4.48784 4.50556 4.52484 4.71259 4.75691 4.78699 4.85906 4.95252 4.99965 5.05667 5.14828 5.28125 5.28673 5.37584 5.42892 5.65048 5.68449 5.90388 5.96116 6.06788 6.11940 6.73419 7.01950 7.30391 8.83651 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.013740 B = 0.002847 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2037.366044 B = 9830.966548 C =11270.326849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.010 3.990 3 Si 0.962 3.038 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.269 1.269 7 C -0.533 4.533 8 H 0.053 0.947 9 C 0.048 3.952 10 C -0.003 4.003 11 C -0.157 4.157 12 C -0.019 4.019 13 C -0.698 4.698 14 S 2.724 3.276 15 O -0.989 6.989 16 O -0.979 6.979 17 N -1.091 6.091 18 C 0.121 3.879 19 C -0.138 4.138 20 C -0.109 4.109 21 C 0.494 3.506 22 O -0.550 6.550 23 O -0.514 6.514 24 C -0.119 4.119 25 C -0.016 4.016 26 C -0.152 4.152 27 H 0.267 0.733 28 H 0.015 0.985 29 H 0.011 0.989 30 H 0.125 0.875 31 H 0.151 0.849 32 H 0.429 0.571 33 H 0.138 0.862 34 H 0.091 0.909 35 H 0.096 0.904 36 H 0.156 0.844 37 H 0.425 0.575 38 H 0.104 0.896 39 H 0.096 0.904 40 H 0.162 0.838 41 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.197 -22.828 -3.993 23.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.189 4.189 3 Si 0.787 3.213 4 H -0.196 1.196 5 H -0.204 1.204 6 H -0.193 1.193 7 C -0.571 4.571 8 H 0.072 0.928 9 C 0.011 3.989 10 C -0.003 4.003 11 C -0.176 4.176 12 C -0.038 4.038 13 C -0.785 4.785 14 S 2.815 3.185 15 O -0.979 6.979 16 O -0.969 6.969 17 N -0.851 5.851 18 C 0.014 3.986 19 C -0.178 4.178 20 C -0.128 4.128 21 C 0.338 3.662 22 O -0.441 6.441 23 O -0.327 6.327 24 C -0.158 4.158 25 C -0.035 4.035 26 C -0.171 4.171 27 H 0.076 0.924 28 H 0.033 0.967 29 H 0.029 0.971 30 H 0.143 0.857 31 H 0.169 0.831 32 H 0.266 0.734 33 H 0.156 0.844 34 H 0.110 0.890 35 H 0.114 0.886 36 H 0.173 0.827 37 H 0.287 0.713 38 H 0.122 0.878 39 H 0.115 0.885 40 H 0.179 0.821 41 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 4.324 -22.457 -4.129 23.239 hybrid contribution -1.218 0.823 0.842 1.694 sum 3.106 -21.634 -3.287 22.102 Atomic orbital electron populations 1.70051 1.07499 1.28101 1.50800 1.25844 0.95743 1.02896 0.94415 0.85484 0.78569 0.78628 0.78633 1.19595 1.20438 1.19312 1.21302 0.93060 0.91095 1.51656 0.92829 1.18258 0.93023 0.90761 0.96842 1.20796 0.93253 0.92237 0.94026 1.21270 1.00000 0.98133 0.98156 1.20979 0.92101 0.93472 0.97265 1.30743 1.24140 1.24123 0.99475 1.00811 0.72771 0.72587 0.72351 1.93541 1.72404 1.86925 1.45049 1.93549 1.71340 1.86861 1.45126 1.55248 1.63335 1.38005 1.28541 1.22509 0.89038 0.98210 0.88876 1.23566 0.96967 0.96936 1.00338 1.22481 0.93509 0.93145 1.03693 1.23553 0.81692 0.85810 0.75172 1.90712 1.76836 1.35714 1.40870 1.84544 1.19686 1.53829 1.74667 1.23347 0.92664 0.95276 1.04508 1.21061 0.91878 0.93392 0.97157 1.21302 0.99740 0.98018 0.98026 0.92409 0.96683 0.97073 0.85711 0.83092 0.73382 0.84398 0.89026 0.88582 0.82660 0.71328 0.87781 0.88535 0.82091 0.85079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.59 13.29 21.45 0.28 -53.31 16 2 C 0.01 0.55 5.46 84.66 0.46 1.02 16 3 Si 0.96 43.13 29.54 68.60 2.03 45.15 16 4 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 5 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 6 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 7 C -0.53 -29.22 9.09 25.60 0.23 -28.99 16 8 H 0.05 2.92 7.74 -2.91 -0.02 2.90 16 9 C 0.05 2.40 5.10 29.10 0.15 2.55 16 10 C 0.00 -0.11 5.07 -19.86 -0.10 -0.21 16 11 C -0.16 -5.64 9.70 22.27 0.22 -5.42 16 12 C -0.02 -0.56 9.52 22.27 0.21 -0.35 16 13 C -0.70 -18.78 5.94 22.27 0.13 -18.65 16 14 S 2.72 62.37 5.71 -56.49 -0.32 62.05 16 15 O -0.99 -28.24 17.28 -128.00 -2.21 -30.46 16 16 O -0.98 -26.32 16.80 -128.00 -2.15 -28.47 16 17 N -1.09 -16.20 5.79 -167.19 -0.97 -17.17 16 18 C 0.12 1.47 4.42 45.52 0.20 1.67 16 19 C -0.14 -1.65 7.45 31.18 0.23 -1.42 16 20 C -0.11 -1.12 4.26 -10.95 -0.05 -1.17 16 21 C 0.49 7.20 7.86 71.23 0.56 7.76 16 22 O -0.55 -11.55 16.66 21.97 0.37 -11.19 16 23 O -0.51 -5.80 13.42 -51.50 -0.69 -6.49 16 24 C -0.12 -1.25 7.19 31.12 0.22 -1.03 16 25 C -0.02 -0.44 9.52 22.27 0.21 -0.22 16 26 C -0.15 -5.21 9.70 22.27 0.22 -5.00 16 27 H 0.27 14.53 8.31 -92.71 -0.77 13.76 16 28 H 0.01 0.78 8.08 -2.39 -0.02 0.76 16 29 H 0.01 0.59 8.09 -2.39 -0.02 0.57 16 30 H 0.12 4.42 8.06 -2.91 -0.02 4.40 16 31 H 0.15 3.76 7.62 -2.91 -0.02 3.74 16 32 H 0.43 4.86 8.93 -96.74 -0.86 3.99 16 33 H 0.14 1.38 7.77 -2.39 -0.02 1.36 16 34 H 0.09 1.18 8.10 -2.39 -0.02 1.16 16 35 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.16 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.43 1.57 9.10 -74.06 -0.67 0.90 16 38 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.10 1.22 7.44 -2.39 -0.02 1.20 16 40 H 0.16 3.38 7.61 -2.91 -0.02 3.35 16 41 H 0.13 4.31 8.06 -2.91 -0.02 4.29 16 Total: -1.00 -76.52 369.43 -1.22 -77.74 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: -0.45 Total: 11.60 kcal Atomic # 6 Polarization: -52.37 SS G_CDS: 2.90 Total: -49.47 kcal Atomic # 7 Polarization: -69.79 SS G_CDS: -0.68 Total: -70.47 kcal Atomic # 8 Polarization: -71.92 SS G_CDS: -4.69 Total: -76.61 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.15 kcal Atomic # 16 Polarization: 62.37 SS G_CDS: -0.32 Total: 62.05 kcal Total: -76.52 -1.22 -77.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601068896.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.808 kcal (2) G-P(sol) polarization free energy of solvation -76.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds