Wall clock time and date at job start Tue Mar 31 2020 22:13:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86798 * 119.99820 * 2 1 4 4 H 1.48504 * 109.47044 * 267.98407 * 3 2 1 5 5 H 1.48499 * 109.47305 * 27.98492 * 3 2 1 6 6 H 1.48499 * 109.47063 * 147.98721 * 3 2 1 7 7 C 1.38813 * 119.99866 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00227 * 313.96692 * 7 2 1 9 9 N 1.36933 * 119.99897 * 133.97443 * 7 2 1 10 10 C 1.46497 * 119.99934 * 336.01299 * 9 7 2 11 11 C 1.52999 * 109.47475 * 269.72402 * 10 9 7 12 12 C 1.50698 * 109.47530 * 179.97438 * 11 10 9 13 13 O 1.20827 * 119.99659 * 0.02562 * 12 11 10 14 14 O 1.34229 * 119.99933 * 180.02562 * 12 11 10 15 15 C 1.46504 * 120.00126 * 155.73741 * 9 7 2 16 16 C 1.50698 * 109.47387 * 264.36434 * 15 9 7 17 17 C 1.38254 * 119.99840 * 255.40124 * 16 15 9 18 18 C 1.38218 * 119.99965 * 179.80996 * 17 16 15 19 19 C 1.38266 * 119.99690 * 0.39167 * 18 17 16 20 20 N 1.48017 * 119.99707 * 179.83488 * 19 18 17 21 21 O 1.21796 * 119.99741 * 180.02562 * 20 19 18 22 22 O 1.21799 * 119.99948 * 0.02562 * 20 19 18 23 23 C 1.38214 * 119.99676 * 359.85844 * 19 18 17 24 24 C 1.38210 * 120.00150 * 75.66889 * 16 15 9 25 25 N 1.48021 * 119.99734 * 359.97438 * 24 16 15 26 26 O 1.21805 * 119.99766 * 217.29733 * 25 24 16 27 27 O 1.21800 * 120.00536 * 37.29597 * 25 24 16 28 28 H 0.96991 * 120.00083 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.47381 * 29.72986 * 10 9 7 30 30 H 1.09009 * 109.47178 * 149.72514 * 10 9 7 31 31 H 1.09002 * 109.47292 * 300.00638 * 11 10 9 32 32 H 1.09009 * 109.46827 * 59.99896 * 11 10 9 33 33 H 0.96705 * 116.99625 * 180.02562 * 14 12 11 34 34 H 1.09003 * 109.47204 * 24.36454 * 15 9 7 35 35 H 1.09004 * 109.47075 * 144.36059 * 15 9 7 36 36 H 1.08001 * 120.00441 * 359.97438 * 17 16 15 37 37 H 1.07996 * 120.00426 * 180.23053 * 18 17 16 38 38 H 1.07999 * 119.99412 * 179.97438 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.5403 2.0218 -1.3993 5 1 1.4270 2.6646 0.6570 6 1 3.5258 1.4529 0.7422 7 6 2.0103 -1.2022 0.0005 8 1 1.7180 -1.9942 0.6740 9 7 3.0657 -1.3838 -0.8528 10 6 3.1554 -0.5963 -2.0849 11 6 2.4488 -1.3414 -3.2191 12 6 2.5405 -0.5310 -4.4863 13 8 3.1128 0.5331 -4.4828 14 8 1.9865 -0.9915 -5.6189 15 6 4.1083 -2.3613 -0.5307 16 6 5.2592 -1.6634 0.1471 17 6 6.4273 -1.4192 -0.5509 18 6 7.4815 -0.7756 0.0696 19 6 7.3706 -0.3833 1.3908 20 7 8.5008 0.3027 2.0564 21 8 8.4033 0.6478 3.2203 22 8 9.5282 0.5219 1.4401 23 6 6.2046 -0.6321 2.0900 24 6 5.1489 -1.2724 1.4682 25 7 3.9002 -1.5387 2.2170 26 8 3.4853 -0.7216 3.0194 27 8 3.2875 -2.5748 2.0308 28 1 -0.4850 0.8400 -0.0004 29 1 2.6777 0.3717 -1.9330 30 1 4.2033 -0.4474 -2.3454 31 1 2.9264 -2.3094 -3.3709 32 1 1.4008 -1.4903 -2.9585 33 1 2.0715 -0.4365 -6.4063 34 1 3.7006 -3.1211 0.1361 35 1 4.4593 -2.8337 -1.4482 36 1 6.5153 -1.7290 -1.5818 37 1 8.3926 -0.5815 -0.4766 38 1 6.1182 -0.3260 3.1221 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601072875.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:43 Heat of formation + Delta-G solvation = -36.436312 kcal Electronic energy + Delta-G solvation = -30402.840943 eV Core-core repulsion = 25832.684971 eV Total energy + Delta-G solvation = -4570.155972 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.104 amu Computer time = 1.86 seconds Orbital eigenvalues (eV) -41.80991 -41.15570 -40.25441 -38.93338 -37.27451 -36.18622 -36.12149 -35.42575 -33.44161 -32.52691 -31.49587 -30.82284 -27.85841 -26.00671 -25.67178 -24.90309 -22.61784 -22.20526 -21.36793 -20.74402 -19.41050 -18.43703 -18.28743 -17.70327 -17.63936 -17.16797 -16.95971 -16.68166 -16.62509 -16.35700 -15.84729 -15.54431 -14.98132 -14.76970 -14.17536 -13.96466 -13.57687 -13.22591 -13.03413 -12.68890 -12.61662 -12.14178 -11.91200 -11.76104 -11.57874 -11.52717 -11.31660 -11.20169 -10.87858 -10.83109 -10.82108 -10.60341 -10.43924 -10.34915 -10.03904 -9.94117 -9.48800 -9.32488 -9.15124 -8.31380 -7.51440 -3.86681 -0.14170 0.55406 1.54333 1.72403 1.89964 2.21062 2.44939 2.68384 2.88224 2.95902 2.99154 3.40707 3.49345 3.88739 4.23416 4.63995 4.79587 4.86520 4.97955 5.08482 5.14206 5.34483 5.42952 5.50995 5.56697 5.63050 5.86473 5.88812 6.02478 6.12100 6.19500 6.34221 6.43546 6.45936 6.61077 6.80291 7.12823 7.42740 7.61627 7.86325 8.04703 8.26111 8.61797 8.74778 9.48851 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.011194 B = 0.004781 C = 0.004033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2500.647411 B = 5854.523854 C = 6940.666226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.750 5.750 2 C 0.046 3.954 3 Si 0.856 3.144 4 H -0.257 1.257 5 H -0.270 1.270 6 H -0.252 1.252 7 C -0.176 4.176 8 H 0.139 0.861 9 N -0.537 5.537 10 C 0.123 3.877 11 C -0.125 4.125 12 C 0.481 3.519 13 O -0.520 6.520 14 O -0.519 6.519 15 C 0.139 3.861 16 C -0.092 4.092 17 C -0.091 4.091 18 C -0.077 4.077 19 C -0.089 4.089 20 N 0.050 4.950 21 O -0.195 6.195 22 O -0.189 6.189 23 C 0.017 3.983 24 C -0.042 4.042 25 N 0.061 4.939 26 O -0.233 6.233 27 O -0.197 6.197 28 H 0.295 0.705 29 H 0.078 0.922 30 H 0.069 0.931 31 H 0.107 0.893 32 H 0.118 0.882 33 H 0.406 0.594 34 H 0.110 0.890 35 H 0.074 0.926 36 H 0.143 0.857 37 H 0.145 0.855 38 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.105 -4.036 -8.844 10.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.378 5.378 2 C -0.173 4.173 3 Si 0.678 3.322 4 H -0.183 1.183 5 H -0.194 1.194 6 H -0.175 1.175 7 C -0.307 4.307 8 H 0.156 0.844 9 N -0.246 5.246 10 C -0.001 4.001 11 C -0.164 4.164 12 C 0.324 3.676 13 O -0.408 6.408 14 O -0.331 6.331 15 C 0.018 3.982 16 C -0.105 4.105 17 C -0.112 4.112 18 C -0.099 4.099 19 C -0.178 4.178 20 N 0.556 4.444 21 O -0.402 6.402 22 O -0.397 6.397 23 C -0.004 4.004 24 C -0.132 4.132 25 N 0.547 4.453 26 O -0.422 6.422 27 O -0.395 6.395 28 H 0.106 0.894 29 H 0.096 0.904 30 H 0.088 0.912 31 H 0.125 0.875 32 H 0.136 0.864 33 H 0.264 0.736 34 H 0.128 0.872 35 H 0.092 0.908 36 H 0.161 0.839 37 H 0.163 0.837 38 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 2.857 -4.131 -9.010 10.315 hybrid contribution 0.503 1.843 0.018 1.911 sum 3.360 -2.287 -8.992 9.869 Atomic orbital electron populations 1.70050 1.06833 1.31128 1.29835 1.25857 0.95544 1.00102 0.95792 0.87287 0.82623 0.82582 0.79757 1.18301 1.19448 1.17510 1.20602 0.95152 0.98336 1.16629 0.84427 1.46333 1.16906 1.44288 1.17108 1.21318 1.00098 0.94889 0.83843 1.21844 1.06434 0.99741 0.88414 1.23704 0.73941 0.84866 0.85092 1.90729 1.40949 1.23378 1.85742 1.84574 1.73477 1.54153 1.20851 1.21000 0.84964 0.92887 0.99395 1.20002 0.94085 1.06932 0.89519 1.20673 0.91211 0.99245 1.00026 1.20695 1.01010 0.96384 0.91804 1.20216 0.88754 1.13670 0.95125 1.43370 1.01620 0.98861 1.00509 1.94501 1.88574 1.55982 1.01107 1.94459 1.18582 1.60496 1.66184 1.20342 0.89329 0.89594 1.01103 1.19975 0.87813 1.12043 0.93410 1.42714 1.01865 1.00165 1.00525 1.94459 1.71851 1.43220 1.32694 1.94309 1.58714 1.15621 1.70825 0.89374 0.90413 0.91221 0.87530 0.86354 0.73608 0.87210 0.90800 0.83933 0.83709 0.82968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -16.66 13.97 55.49 0.78 -15.88 16 2 C 0.05 1.01 4.87 -17.43 -0.08 0.92 16 3 Si 0.86 18.29 26.46 -169.99 -4.50 13.79 16 4 H -0.26 -5.34 6.24 56.52 0.35 -4.99 16 5 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 6 H -0.25 -5.89 7.11 56.52 0.40 -5.48 16 7 C -0.18 -3.66 7.96 -15.06 -0.12 -3.78 16 8 H 0.14 3.13 6.25 -52.49 -0.33 2.81 16 9 N -0.54 -9.41 2.28 -174.60 -0.40 -9.81 16 10 C 0.12 2.01 4.16 -4.04 -0.02 1.99 16 11 C -0.13 -1.65 6.13 -27.88 -0.17 -1.82 16 12 C 0.48 6.39 8.33 36.00 0.30 6.69 16 13 O -0.52 -8.58 16.74 -18.75 -0.31 -8.90 16 14 O -0.52 -5.30 13.42 -39.25 -0.53 -5.82 16 15 C 0.14 2.13 5.34 -5.19 -0.03 2.11 16 16 C -0.09 -1.53 5.45 -104.63 -0.57 -2.10 16 17 C -0.09 -1.28 9.67 -39.58 -0.38 -1.66 16 18 C -0.08 -1.15 9.56 -39.58 -0.38 -1.53 16 19 C -0.09 -1.57 6.85 -79.95 -0.55 -2.12 16 20 N 0.05 0.94 4.45 33.96 0.15 1.09 16 21 O -0.20 -3.82 18.45 -29.46 -0.54 -4.36 16 22 O -0.19 -3.49 18.45 -29.46 -0.54 -4.03 16 23 C 0.02 0.32 9.17 -39.59 -0.36 -0.05 16 24 C -0.04 -0.82 6.48 -79.95 -0.52 -1.33 16 25 N 0.06 1.31 3.31 33.96 0.11 1.42 16 26 O -0.23 -5.45 18.94 -29.46 -0.56 -6.00 16 27 O -0.20 -4.17 13.71 -29.46 -0.40 -4.57 16 28 H 0.30 6.09 8.31 -40.82 -0.34 5.75 16 29 H 0.08 1.48 3.37 -51.93 -0.18 1.30 16 30 H 0.07 1.06 8.03 -51.92 -0.42 0.65 16 31 H 0.11 1.13 8.14 -51.93 -0.42 0.70 16 32 H 0.12 1.66 8.14 -51.92 -0.42 1.24 16 33 H 0.41 2.38 9.10 45.56 0.41 2.80 16 34 H 0.11 1.80 5.68 -51.93 -0.29 1.51 16 35 H 0.07 0.87 7.93 -51.93 -0.41 0.46 16 36 H 0.14 1.48 8.00 -52.49 -0.42 1.06 16 37 H 0.15 1.87 7.61 -52.49 -0.40 1.47 16 38 H 0.15 2.81 7.56 -52.49 -0.40 2.42 16 LS Contribution 342.76 15.07 5.17 5.17 Total: -1.00 -27.37 342.76 -6.92 -34.29 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -2.46 Total: 6.31 kcal Atomic # 6 Polarization: 0.20 SS G_CDS: -2.88 Total: -2.68 kcal Atomic # 7 Polarization: -23.82 SS G_CDS: 0.64 Total: -23.17 kcal Atomic # 8 Polarization: -30.81 SS G_CDS: -2.89 Total: -33.70 kcal Atomic # 14 Polarization: 18.29 SS G_CDS: -4.50 Total: 13.79 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -27.37 -6.92 -34.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601072875.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.146 kcal (2) G-P(sol) polarization free energy of solvation -27.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.86 seconds