Wall clock time and date at job start Tue Mar 31 2020 22:11:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30817 * 1 3 3 Si 1.86807 * 119.99686 * 2 1 4 4 H 1.48505 * 109.46906 * 274.66034 * 3 2 1 5 5 H 1.48499 * 109.47220 * 34.65943 * 3 2 1 6 6 H 1.48500 * 109.47278 * 154.66181 * 3 2 1 7 7 C 1.39942 * 120.00502 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00412 * 162.22720 * 7 2 1 9 9 C 1.41396 * 120.00083 * 342.23482 * 7 2 1 10 10 C 1.40711 * 120.24787 * 155.28075 * 9 7 2 11 11 C 1.37619 * 119.74798 * 180.29782 * 10 9 7 12 12 C 1.38635 * 120.24315 * 359.42278 * 11 10 9 13 13 C 1.50701 * 119.74919 * 180.30050 * 12 11 10 14 14 S 1.81407 * 109.47414 * 270.30297 * 13 12 11 15 15 O 1.42098 * 110.53744 * 291.62469 * 14 13 12 16 16 O 1.42098 * 110.54220 * 68.37229 * 14 13 12 17 17 N 1.65599 * 104.44983 * 179.97438 * 14 13 12 18 18 C 1.46500 * 120.00053 * 64.99725 * 17 14 13 19 19 H 1.09000 * 109.47281 * 334.99764 * 18 17 14 20 20 C 1.50698 * 109.47000 * 95.00259 * 18 17 14 21 21 O 1.20825 * 120.00191 * 359.97438 * 20 18 17 22 22 O 1.34229 * 120.00043 * 180.02562 * 20 18 17 23 23 C 1.52997 * 109.47137 * 215.00089 * 18 17 14 24 24 C 1.53006 * 117.49755 * 248.74817 * 23 18 17 25 25 C 1.52998 * 117.49914 * 180.09078 * 23 18 17 26 26 C 1.38635 * 120.50227 * 0.60806 * 12 11 10 27 27 C 1.37612 * 120.24908 * 359.67316 * 26 12 11 28 28 H 0.97001 * 120.00527 * 0.02562 * 1 2 3 29 29 H 1.07999 * 120.12972 * 0.02621 * 10 9 7 30 30 H 1.07995 * 119.87901 * 179.72545 * 11 10 9 31 31 H 1.09001 * 109.46902 * 30.30091 * 13 12 11 32 32 H 1.09003 * 109.47515 * 150.30043 * 13 12 11 33 33 H 0.97004 * 119.99833 * 245.00334 * 17 14 13 34 34 H 0.96703 * 116.99755 * 179.97438 * 22 20 18 35 35 H 1.08997 * 115.55417 * 34.41654 * 23 18 17 36 36 H 1.08997 * 117.49993 * 0.02562 * 24 23 18 37 37 H 1.09003 * 117.50012 * 145.01784 * 24 23 18 38 38 H 1.09006 * 117.49984 * 214.97577 * 25 23 18 39 39 H 1.08999 * 117.49883 * 359.97438 * 25 23 18 40 40 H 1.08006 * 119.87526 * 179.69788 * 26 12 11 41 41 H 1.08003 * 120.12801 * 180.02562 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 2.3910 2.1034 -1.3955 5 1 1.4922 2.6223 0.7962 6 1 3.5855 1.4140 0.5992 7 6 2.0080 -1.2119 0.0005 8 1 3.0494 -1.2343 -0.2849 9 6 1.3517 -2.4071 0.3747 10 6 1.8219 -3.6493 -0.0900 11 6 1.1716 -4.8057 0.2756 12 6 0.0644 -4.7509 1.1082 13 6 -0.6352 -6.0247 1.5070 14 16 -1.9305 -6.4078 0.2962 15 8 -2.9825 -5.4556 0.3734 16 8 -1.3554 -6.7645 -0.9533 17 7 -2.6098 -7.8134 0.8486 18 6 -3.3279 -7.8276 2.1254 19 1 -2.9590 -7.0208 2.7587 20 6 -4.8015 -7.6361 1.8751 21 8 -5.2100 -7.5012 0.7461 22 8 -5.6603 -7.6145 2.9066 23 6 -3.0994 -9.1694 2.8242 24 6 -4.2952 -10.1164 2.9435 25 6 -3.7729 -9.3829 4.1813 26 6 -0.4079 -3.5326 1.5715 27 6 0.2232 -2.3631 1.2141 28 1 -0.4851 0.8400 -0.0004 29 1 2.6872 -3.6947 -0.7346 30 1 1.5280 -5.7599 -0.0834 31 1 0.0864 -6.8411 1.5377 32 1 -1.0843 -5.8995 2.4922 33 1 -2.5321 -8.6274 0.3267 34 1 -6.5958 -7.4886 2.6964 35 1 -2.1166 -9.6163 2.6742 36 1 -5.2446 -9.7837 2.5238 37 1 -4.0991 -11.1863 2.8723 38 1 -3.2332 -9.9705 4.9241 39 1 -4.3783 -8.5672 4.5765 40 1 -1.2743 -3.5013 2.2157 41 1 -0.1462 -1.4151 1.5766 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601076892.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:11:15 Heat of formation + Delta-G solvation = -118.124195 kcal Electronic energy + Delta-G solvation = -27105.586328 eV Core-core repulsion = 23078.181318 eV Total energy + Delta-G solvation = -4027.405010 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.80146 -37.80706 -37.72025 -36.65558 -36.35318 -35.43690 -34.28020 -34.19501 -31.54615 -29.46262 -27.88799 -27.84014 -24.27943 -23.30530 -22.72364 -21.19537 -20.70619 -20.45323 -19.10654 -18.19501 -17.76485 -17.46079 -17.10384 -16.50896 -15.83803 -15.79341 -15.41971 -15.10599 -14.70091 -14.37454 -14.06836 -13.92387 -13.82032 -13.32267 -12.70365 -12.45463 -12.19960 -12.10350 -11.92310 -11.83010 -11.71978 -11.59436 -11.52549 -11.45798 -11.39395 -11.16237 -11.12214 -11.04343 -10.78755 -10.63916 -10.55568 -10.32304 -9.87791 -9.69348 -9.55461 -9.23299 -7.63742 -7.47281 -6.93310 -4.51021 0.51481 2.07140 2.59641 2.64693 2.94072 2.99968 3.02281 3.03061 3.09758 3.40373 3.81248 4.07081 4.24342 4.38706 4.46840 4.49841 4.60821 4.68864 4.80295 5.11271 5.19458 5.27193 5.32804 5.51851 5.52123 5.61762 5.73540 5.86376 5.99383 6.17296 6.23475 6.34147 6.81507 6.83962 6.90241 7.07572 7.16344 7.43869 7.64392 7.75326 7.87231 7.88495 8.10853 8.45776 8.70277 8.78135 10.00032 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.022673 B = 0.002709 C = 0.002638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.630171 B =10333.409869 C =10609.786972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.777 5.777 2 C 0.073 3.927 3 Si 0.912 3.088 4 H -0.268 1.268 5 H -0.273 1.273 6 H -0.259 1.259 7 C -0.446 4.446 8 H 0.083 0.917 9 C 0.118 3.882 10 C -0.225 4.225 11 C -0.067 4.067 12 C -0.240 4.240 13 C -0.517 4.517 14 S 2.565 3.435 15 O -0.951 6.951 16 O -0.956 6.956 17 N -1.105 6.105 18 C 0.200 3.800 19 H 0.124 0.876 20 C 0.462 3.538 21 O -0.487 6.487 22 O -0.518 6.518 23 C -0.167 4.167 24 C -0.179 4.179 25 C -0.161 4.161 26 C -0.080 4.080 27 C -0.166 4.166 28 H 0.286 0.714 29 H 0.099 0.901 30 H 0.096 0.904 31 H 0.125 0.875 32 H 0.119 0.881 33 H 0.418 0.582 34 H 0.408 0.592 35 H 0.129 0.871 36 H 0.095 0.905 37 H 0.099 0.901 38 H 0.101 0.899 39 H 0.111 0.889 40 H 0.095 0.905 41 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.585 -15.384 9.864 19.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.401 5.401 2 C -0.147 4.147 3 Si 0.736 3.264 4 H -0.193 1.193 5 H -0.198 1.198 6 H -0.182 1.182 7 C -0.476 4.476 8 H 0.101 0.899 9 C 0.114 3.886 10 C -0.245 4.245 11 C -0.086 4.086 12 C -0.245 4.245 13 C -0.648 4.648 14 S 2.666 3.334 15 O -0.941 6.941 16 O -0.946 6.946 17 N -0.859 5.859 18 C 0.089 3.911 19 H 0.142 0.858 20 C 0.300 3.700 21 O -0.372 6.372 22 O -0.330 6.330 23 C -0.186 4.186 24 C -0.216 4.216 25 C -0.198 4.198 26 C -0.099 4.099 27 C -0.186 4.186 28 H 0.097 0.903 29 H 0.117 0.883 30 H 0.114 0.886 31 H 0.143 0.857 32 H 0.138 0.862 33 H 0.252 0.748 34 H 0.267 0.733 35 H 0.147 0.853 36 H 0.114 0.886 37 H 0.117 0.883 38 H 0.119 0.881 39 H 0.130 0.870 40 H 0.113 0.887 41 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -6.885 -14.699 8.900 18.512 hybrid contribution -0.098 0.302 0.024 0.319 sum -6.982 -14.397 8.924 18.321 Atomic orbital electron populations 1.69822 1.07756 1.29904 1.32614 1.26036 0.94804 1.01768 0.92139 0.86227 0.80707 0.80174 0.79291 1.19333 1.19827 1.18227 1.19750 0.98302 0.91171 1.38328 0.89851 1.17745 0.90778 0.92199 0.87845 1.20978 1.04071 0.92584 1.06889 1.20473 0.94588 0.97266 0.96311 1.18067 1.03451 0.90294 1.12719 1.28944 1.15189 1.06022 1.14669 1.07249 0.76439 0.72815 0.76943 1.93567 1.53287 1.60426 1.86792 1.93546 1.79587 1.81884 1.39606 1.56026 1.68372 1.30722 1.30823 1.19673 0.85466 0.99923 0.86033 0.85835 1.23945 0.90323 0.72745 0.82964 1.90757 1.78862 1.43313 1.24221 1.84554 1.23060 1.84946 1.40436 1.22465 0.99424 0.95348 1.01391 1.23179 0.97354 0.98267 1.02826 1.23107 1.02868 1.03528 0.90316 1.20597 0.98036 0.92418 0.98894 1.21311 0.99365 0.96760 1.01187 0.90317 0.88265 0.88583 0.85710 0.86222 0.74803 0.73285 0.85269 0.88624 0.88256 0.88067 0.87026 0.88705 0.85970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.65 10.97 55.55 0.61 -19.04 16 2 C 0.07 1.76 5.14 -17.35 -0.09 1.67 16 3 Si 0.91 17.88 29.60 -169.99 -5.03 12.85 16 4 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 5 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 6 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 7 C -0.45 -11.41 9.05 -37.74 -0.34 -11.75 16 8 H 0.08 2.02 7.91 -52.48 -0.41 1.60 16 9 C 0.12 3.07 5.57 -106.82 -0.60 2.47 16 10 C -0.23 -5.43 9.80 -38.87 -0.38 -5.81 16 11 C -0.07 -1.48 9.67 -39.66 -0.38 -1.86 16 12 C -0.24 -5.10 5.16 -104.33 -0.54 -5.64 16 13 C -0.52 -8.11 6.08 36.01 0.22 -7.89 16 14 S 2.56 45.17 5.36 -107.50 -0.58 44.59 16 15 O -0.95 -20.53 17.78 -57.54 -1.02 -21.55 16 16 O -0.96 -19.93 18.08 -57.54 -1.04 -20.97 16 17 N -1.11 -13.99 4.85 -5.88 -0.03 -14.01 16 18 C 0.20 2.14 2.99 -69.08 -0.21 1.94 16 19 H 0.12 1.13 7.15 -51.93 -0.37 0.76 16 20 C 0.46 5.75 6.12 36.00 0.22 5.97 16 21 O -0.49 -8.11 17.19 -18.75 -0.32 -8.43 16 22 O -0.52 -4.43 10.32 -39.26 -0.41 -4.83 16 23 C -0.17 -1.25 5.93 -90.62 -0.54 -1.79 16 24 C -0.18 -1.26 9.54 -26.69 -0.25 -1.52 16 25 C -0.16 -1.01 9.77 -26.69 -0.26 -1.27 16 26 C -0.08 -1.84 9.67 -39.66 -0.38 -2.22 16 27 C -0.17 -4.25 8.70 -38.87 -0.34 -4.58 16 28 H 0.29 6.52 8.30 -40.82 -0.34 6.18 16 29 H 0.10 2.22 8.06 -52.49 -0.42 1.79 16 30 H 0.10 1.86 8.06 -52.49 -0.42 1.43 16 31 H 0.12 1.56 8.08 -51.92 -0.42 1.14 16 32 H 0.12 1.49 7.38 -51.92 -0.38 1.11 16 33 H 0.42 4.52 8.80 -34.47 -0.30 4.22 16 34 H 0.41 2.02 9.10 45.56 0.41 2.44 16 35 H 0.13 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.10 0.76 5.86 -51.93 -0.30 0.46 16 37 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.11 0.73 6.84 -51.93 -0.36 0.38 16 40 H 0.09 1.95 8.06 -52.48 -0.42 1.53 16 41 H 0.12 3.17 6.18 -52.48 -0.32 2.85 16 LS Contribution 362.85 15.07 5.47 5.47 Total: -1.00 -35.63 362.85 -10.35 -45.98 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: -4.13 Total: 12.23 kcal Atomic # 6 Polarization: -28.41 SS G_CDS: -3.87 Total: -32.28 kcal Atomic # 7 Polarization: -33.63 SS G_CDS: 0.58 Total: -33.05 kcal Atomic # 8 Polarization: -53.00 SS G_CDS: -2.79 Total: -55.79 kcal Atomic # 14 Polarization: 17.88 SS G_CDS: -5.03 Total: 12.85 kcal Atomic # 16 Polarization: 45.17 SS G_CDS: -0.58 Total: 44.59 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -35.63 -10.35 -45.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601076892.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.146 kcal (2) G-P(sol) polarization free energy of solvation -35.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds