Wall clock time and date at job start Tue Mar 31 2020 22:11:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30817 * 1 3 3 Si 1.86807 * 119.99686 * 2 1 4 4 H 1.48505 * 109.46906 * 274.66034 * 3 2 1 5 5 H 1.48499 * 109.47220 * 34.65943 * 3 2 1 6 6 H 1.48500 * 109.47278 * 154.66181 * 3 2 1 7 7 C 1.39942 * 120.00502 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00412 * 162.22720 * 7 2 1 9 9 C 1.41396 * 120.00083 * 342.23482 * 7 2 1 10 10 C 1.40711 * 120.24787 * 155.28075 * 9 7 2 11 11 C 1.37619 * 119.74798 * 180.29782 * 10 9 7 12 12 C 1.38635 * 120.24315 * 359.42278 * 11 10 9 13 13 C 1.50701 * 119.74919 * 180.30050 * 12 11 10 14 14 S 1.81407 * 109.47414 * 270.30297 * 13 12 11 15 15 O 1.42098 * 110.53744 * 291.62469 * 14 13 12 16 16 O 1.42098 * 110.54220 * 68.37229 * 14 13 12 17 17 N 1.65599 * 104.44983 * 179.97438 * 14 13 12 18 18 C 1.46500 * 120.00053 * 64.99725 * 17 14 13 19 19 H 1.09000 * 109.47281 * 334.99764 * 18 17 14 20 20 C 1.50698 * 109.47000 * 95.00259 * 18 17 14 21 21 O 1.20825 * 120.00191 * 359.97438 * 20 18 17 22 22 O 1.34229 * 120.00043 * 180.02562 * 20 18 17 23 23 C 1.52997 * 109.47137 * 215.00089 * 18 17 14 24 24 C 1.53006 * 117.49755 * 248.74817 * 23 18 17 25 25 C 1.52998 * 117.49914 * 180.09078 * 23 18 17 26 26 C 1.38635 * 120.50227 * 0.60806 * 12 11 10 27 27 C 1.37612 * 120.24908 * 359.67316 * 26 12 11 28 28 H 0.97001 * 120.00527 * 0.02562 * 1 2 3 29 29 H 1.07999 * 120.12972 * 0.02621 * 10 9 7 30 30 H 1.07995 * 119.87901 * 179.72545 * 11 10 9 31 31 H 1.09001 * 109.46902 * 30.30091 * 13 12 11 32 32 H 1.09003 * 109.47515 * 150.30043 * 13 12 11 33 33 H 0.97004 * 119.99833 * 245.00334 * 17 14 13 34 34 H 0.96703 * 116.99755 * 179.97438 * 22 20 18 35 35 H 1.08997 * 115.55417 * 34.41654 * 23 18 17 36 36 H 1.08997 * 117.49993 * 0.02562 * 24 23 18 37 37 H 1.09003 * 117.50012 * 145.01784 * 24 23 18 38 38 H 1.09006 * 117.49984 * 214.97577 * 25 23 18 39 39 H 1.08999 * 117.49883 * 359.97438 * 25 23 18 40 40 H 1.08006 * 119.87526 * 179.69788 * 26 12 11 41 41 H 1.08003 * 120.12801 * 180.02562 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 2.3910 2.1034 -1.3955 5 1 1.4922 2.6223 0.7962 6 1 3.5855 1.4140 0.5992 7 6 2.0080 -1.2119 0.0005 8 1 3.0494 -1.2343 -0.2849 9 6 1.3517 -2.4071 0.3747 10 6 1.8219 -3.6493 -0.0900 11 6 1.1716 -4.8057 0.2756 12 6 0.0644 -4.7509 1.1082 13 6 -0.6352 -6.0247 1.5070 14 16 -1.9305 -6.4078 0.2962 15 8 -2.9825 -5.4556 0.3734 16 8 -1.3554 -6.7645 -0.9533 17 7 -2.6098 -7.8134 0.8486 18 6 -3.3279 -7.8276 2.1254 19 1 -2.9590 -7.0208 2.7587 20 6 -4.8015 -7.6361 1.8751 21 8 -5.2100 -7.5012 0.7461 22 8 -5.6603 -7.6145 2.9066 23 6 -3.0994 -9.1694 2.8242 24 6 -4.2952 -10.1164 2.9435 25 6 -3.7729 -9.3829 4.1813 26 6 -0.4079 -3.5326 1.5715 27 6 0.2232 -2.3631 1.2141 28 1 -0.4851 0.8400 -0.0004 29 1 2.6872 -3.6947 -0.7346 30 1 1.5280 -5.7599 -0.0834 31 1 0.0864 -6.8411 1.5377 32 1 -1.0843 -5.8995 2.4922 33 1 -2.5321 -8.6274 0.3267 34 1 -6.5958 -7.4886 2.6964 35 1 -2.1166 -9.6163 2.6742 36 1 -5.2446 -9.7837 2.5238 37 1 -4.0991 -11.1863 2.8723 38 1 -3.2332 -9.9705 4.9241 39 1 -4.3783 -8.5672 4.5765 40 1 -1.2743 -3.5013 2.2157 41 1 -0.1462 -1.4151 1.5766 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601076892.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:11:14 Heat of formation + Delta-G solvation = -144.702951 kcal Electronic energy + Delta-G solvation = -27106.738869 eV Core-core repulsion = 23078.181318 eV Total energy + Delta-G solvation = -4028.557551 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.68151 -39.58695 -38.43049 -38.13192 -37.28223 -36.95464 -35.96110 -35.19804 -33.23344 -31.27953 -29.56109 -28.74036 -26.01015 -24.05148 -23.22269 -23.01874 -22.18890 -21.44581 -20.40778 -19.30077 -19.13383 -18.85619 -18.22720 -17.49387 -17.23132 -17.00881 -16.89833 -16.18810 -16.04119 -15.68030 -15.57041 -15.32054 -14.81186 -14.37987 -14.22304 -13.90194 -13.71281 -13.55092 -13.38434 -13.15455 -13.08582 -13.04619 -12.82258 -12.74946 -12.74692 -12.36069 -12.26714 -12.20958 -12.12515 -11.91909 -11.58048 -11.36170 -11.33059 -11.15958 -11.02744 -10.67938 -9.47045 -9.28631 -8.72083 -6.41246 -0.86230 0.87988 1.07337 1.14292 1.37810 1.47848 1.54641 1.62554 2.06431 2.17764 2.62211 2.85001 2.87972 3.22997 3.47657 3.62663 3.65147 3.79599 3.98205 4.04952 4.12095 4.15559 4.43962 4.45629 4.51838 4.66086 4.74581 4.87193 4.99508 5.08216 5.08462 5.24994 5.25551 5.34105 5.40119 5.57458 5.61160 5.83506 5.91105 6.01952 6.03636 6.28213 6.60364 6.84398 6.92705 6.93661 8.24608 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.022673 B = 0.002709 C = 0.002638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.630171 B =10333.409869 C =10609.786972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.818 5.818 2 C 0.032 3.968 3 Si 0.988 3.012 4 H -0.263 1.263 5 H -0.265 1.265 6 H -0.254 1.254 7 C -0.488 4.488 8 H 0.084 0.916 9 C 0.085 3.915 10 C -0.246 4.246 11 C -0.075 4.075 12 C -0.235 4.235 13 C -0.511 4.511 14 S 2.580 3.420 15 O -0.998 6.998 16 O -0.995 6.995 17 N -1.090 6.090 18 C 0.187 3.813 19 H 0.144 0.856 20 C 0.462 3.538 21 O -0.540 6.540 22 O -0.503 6.503 23 C -0.167 4.167 24 C -0.188 4.188 25 C -0.148 4.148 26 C -0.090 4.090 27 C -0.195 4.195 28 H 0.292 0.708 29 H 0.106 0.894 30 H 0.128 0.872 31 H 0.170 0.830 32 H 0.161 0.839 33 H 0.428 0.572 34 H 0.424 0.576 35 H 0.152 0.848 36 H 0.081 0.919 37 H 0.113 0.887 38 H 0.121 0.879 39 H 0.108 0.892 40 H 0.116 0.884 41 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.342 -17.575 11.940 22.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C -0.184 4.184 3 Si 0.807 3.193 4 H -0.188 1.188 5 H -0.189 1.189 6 H -0.178 1.178 7 C -0.516 4.516 8 H 0.102 0.898 9 C 0.082 3.918 10 C -0.265 4.265 11 C -0.095 4.095 12 C -0.239 4.239 13 C -0.643 4.643 14 S 2.682 3.318 15 O -0.988 6.988 16 O -0.985 6.985 17 N -0.848 5.848 18 C 0.077 3.923 19 H 0.161 0.839 20 C 0.303 3.697 21 O -0.429 6.429 22 O -0.316 6.316 23 C -0.186 4.186 24 C -0.225 4.225 25 C -0.185 4.185 26 C -0.109 4.109 27 C -0.215 4.215 28 H 0.103 0.897 29 H 0.124 0.876 30 H 0.146 0.854 31 H 0.187 0.813 32 H 0.179 0.821 33 H 0.265 0.735 34 H 0.286 0.714 35 H 0.170 0.830 36 H 0.100 0.900 37 H 0.131 0.869 38 H 0.140 0.860 39 H 0.126 0.874 40 H 0.134 0.866 41 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -6.645 -16.889 10.989 21.217 hybrid contribution -0.356 0.690 -0.508 0.928 sum -7.001 -16.199 10.481 20.525 Atomic orbital electron populations 1.69882 1.09306 1.31088 1.34071 1.26909 0.95484 1.05000 0.91021 0.85116 0.79256 0.75446 0.79446 1.18779 1.18918 1.17761 1.19991 0.98651 0.92333 1.40670 0.89827 1.18108 0.91619 0.93355 0.88703 1.21233 1.04866 0.92973 1.07473 1.20909 0.94646 0.97920 0.95994 1.18512 1.02732 0.91986 1.10700 1.28939 1.15061 1.04594 1.15694 1.06213 0.76204 0.72931 0.76501 1.93524 1.55205 1.62653 1.87393 1.93498 1.80259 1.82603 1.42163 1.55416 1.68125 1.29351 1.31937 1.20140 0.84184 1.02776 0.85219 0.83878 1.24372 0.91477 0.71267 0.82604 1.90748 1.79876 1.46003 1.26232 1.84515 1.24153 1.84019 1.38870 1.22489 1.00605 0.93613 1.01931 1.23245 0.96643 0.99075 1.03521 1.23202 1.02124 1.03159 0.90048 1.20947 0.98387 0.92504 0.99070 1.21330 1.00389 0.97254 1.02499 0.89743 0.87620 0.85404 0.81259 0.82101 0.73545 0.71411 0.83033 0.90033 0.86904 0.86044 0.87378 0.86573 0.87630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.24 10.97 21.82 0.24 -43.00 16 2 C 0.03 1.61 5.14 85.26 0.44 2.04 16 3 Si 0.99 37.60 29.60 68.60 2.03 39.63 16 4 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 5 H -0.26 -9.59 7.11 99.48 0.71 -8.88 16 6 H -0.25 -9.36 7.11 99.48 0.71 -8.66 16 7 C -0.49 -26.07 9.05 23.46 0.21 -25.86 16 8 H 0.08 4.24 7.91 -2.91 -0.02 4.22 16 9 C 0.09 4.62 5.57 -21.29 -0.12 4.50 16 10 C -0.25 -12.06 9.80 22.73 0.22 -11.83 16 11 C -0.08 -3.24 9.67 22.22 0.21 -3.02 16 12 C -0.23 -9.52 5.16 -19.67 -0.10 -9.62 16 13 C -0.51 -13.88 6.08 71.24 0.43 -13.45 16 14 S 2.58 85.79 5.36 -56.49 -0.30 85.48 16 15 O -1.00 -42.52 17.78 -127.65 -2.27 -44.79 16 16 O -0.99 -40.35 18.08 -127.65 -2.31 -42.66 16 17 N -1.09 -24.70 4.85 -172.53 -0.84 -25.53 16 18 C 0.19 3.41 2.99 44.24 0.13 3.54 16 19 H 0.14 2.03 7.15 -2.39 -0.02 2.01 16 20 C 0.46 10.73 6.12 71.24 0.44 11.17 16 21 O -0.54 -17.82 17.19 21.97 0.38 -17.44 16 22 O -0.50 -7.56 10.32 -51.41 -0.53 -8.09 16 23 C -0.17 -1.83 5.93 -10.79 -0.06 -1.89 16 24 C -0.19 -2.05 9.54 30.62 0.29 -1.76 16 25 C -0.15 -1.26 9.77 30.62 0.30 -0.96 16 26 C -0.09 -4.09 9.67 22.22 0.21 -3.88 16 27 C -0.19 -10.31 8.70 22.73 0.20 -10.11 16 28 H 0.29 13.87 8.30 -92.71 -0.77 13.10 16 29 H 0.11 4.85 8.06 -2.91 -0.02 4.82 16 30 H 0.13 4.58 8.06 -2.91 -0.02 4.56 16 31 H 0.17 3.22 8.08 -2.39 -0.02 3.20 16 32 H 0.16 3.13 7.38 -2.39 -0.02 3.11 16 33 H 0.43 8.21 8.80 -96.74 -0.85 7.36 16 34 H 0.42 3.52 9.10 -74.06 -0.67 2.84 16 35 H 0.15 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.08 1.13 5.86 -2.39 -0.01 1.12 16 37 H 0.11 0.92 8.14 -2.39 -0.02 0.91 16 38 H 0.12 0.60 8.14 -2.38 -0.02 0.58 16 39 H 0.11 1.02 6.84 -2.39 -0.02 1.00 16 40 H 0.12 4.66 8.06 -2.91 -0.02 4.63 16 41 H 0.11 5.80 6.18 -2.91 -0.02 5.78 16 Total: -1.00 -82.58 362.85 -1.22 -83.80 By element: Atomic # 1 Polarization: 34.16 SS G_CDS: -0.43 Total: 33.73 kcal Atomic # 6 Polarization: -63.93 SS G_CDS: 2.81 Total: -61.13 kcal Atomic # 7 Polarization: -67.94 SS G_CDS: -0.60 Total: -68.53 kcal Atomic # 8 Polarization: -108.25 SS G_CDS: -4.73 Total: -112.98 kcal Atomic # 14 Polarization: 37.60 SS G_CDS: 2.03 Total: 39.63 kcal Atomic # 16 Polarization: 85.79 SS G_CDS: -0.30 Total: 85.48 kcal Total: -82.58 -1.22 -83.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601076892.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.901 kcal (2) G-P(sol) polarization free energy of solvation -82.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds