Wall clock time and date at job start Tue Mar 31 2020 22:11:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30820 * 1 3 3 Si 1.86804 * 119.99728 * 2 1 4 4 H 1.48498 * 109.47075 * 239.99934 * 3 2 1 5 5 H 1.48499 * 109.46991 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47231 * 120.00040 * 3 2 1 7 7 C 1.39939 * 120.00244 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00166 * 197.84598 * 7 2 1 9 9 C 1.41398 * 120.00283 * 17.84078 * 7 2 1 10 10 C 1.40709 * 120.24734 * 204.38574 * 9 7 2 11 11 C 1.37616 * 119.74556 * 180.02562 * 10 9 7 12 12 C 1.38640 * 120.24801 * 0.02562 * 11 10 9 13 13 C 1.50701 * 119.74768 * 179.97438 * 12 11 10 14 14 S 1.81392 * 109.46985 * 90.00783 * 13 12 11 15 15 O 1.42102 * 110.54032 * 291.61899 * 14 13 12 16 16 O 1.42092 * 110.54956 * 68.37083 * 14 13 12 17 17 N 1.65600 * 104.45212 * 179.97438 * 14 13 12 18 18 C 1.46509 * 119.99865 * 64.99183 * 17 14 13 19 19 H 1.09000 * 109.47012 * 25.00961 * 18 17 14 20 20 C 1.50694 * 109.47141 * 265.00167 * 18 17 14 21 21 O 1.20824 * 120.00175 * 0.02562 * 20 18 17 22 22 O 1.34227 * 119.99687 * 179.97438 * 20 18 17 23 23 C 1.53005 * 109.46702 * 145.00510 * 18 17 14 24 24 C 1.53002 * 117.49777 * 248.74808 * 23 18 17 25 25 C 1.52999 * 117.49415 * 180.09088 * 23 18 17 26 26 C 1.38632 * 120.49849 * 0.25906 * 12 11 10 27 27 C 1.37622 * 120.25039 * 359.43619 * 26 12 11 28 28 H 0.96997 * 120.00535 * 359.97438 * 1 2 3 29 29 H 1.07994 * 120.12670 * 0.02562 * 10 9 7 30 30 H 1.07994 * 119.87962 * 180.02562 * 11 10 9 31 31 H 1.09007 * 109.46706 * 210.00371 * 13 12 11 32 32 H 1.08998 * 109.47115 * 329.99916 * 13 12 11 33 33 H 0.96999 * 120.00475 * 245.00039 * 17 14 13 34 34 H 0.96706 * 116.99927 * 180.02562 * 22 20 18 35 35 H 1.08991 * 115.55115 * 34.41888 * 23 18 17 36 36 H 1.09005 * 117.49629 * 0.02562 * 24 23 18 37 37 H 1.08999 * 117.49943 * 145.02112 * 24 23 18 38 38 H 1.09006 * 117.49583 * 214.97931 * 25 23 18 39 39 H 1.08995 * 117.50417 * 359.97374 * 25 23 18 40 40 H 1.08005 * 119.87394 * 179.69991 * 26 12 11 41 41 H 1.07996 * 120.12662 * 180.27958 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 3.0959 1.6965 -1.2125 5 1 1.2771 2.7465 0.0006 6 1 3.0959 1.6965 1.2125 7 6 2.0079 -1.2119 -0.0005 8 1 3.0490 -1.2345 0.2861 9 6 1.3521 -2.4069 -0.3762 10 6 1.8259 -3.6498 0.0825 11 6 1.1799 -4.8065 -0.2900 12 6 0.0667 -4.7502 -1.1144 13 6 -0.6317 -6.0239 -1.5157 14 16 -1.9232 -6.4132 -0.3030 15 8 -1.3443 -6.7733 0.9437 16 8 -2.9770 -5.4627 -0.3741 17 7 -2.6025 -7.8174 -0.8591 18 6 -1.8066 -9.0464 -0.9095 19 1 -1.0027 -8.9889 -0.1756 20 6 -1.2184 -9.2078 -2.2875 21 8 -1.4408 -8.3810 -3.1399 22 8 -0.4467 -10.2697 -2.5675 23 6 -2.7012 -10.2466 -0.5930 24 6 -2.4602 -10.9782 0.7290 25 6 -2.0513 -11.6317 -0.5935 26 6 -0.4053 -3.5316 -1.5770 27 6 0.2211 -2.3618 -1.2123 28 1 -0.4851 0.8400 0.0004 29 1 2.6931 -3.6960 0.7244 30 1 1.5415 -5.7616 0.0612 31 1 -1.0836 -5.8960 -2.4994 32 1 0.0912 -6.8390 -1.5512 33 1 -3.5273 -7.8262 -1.1516 34 1 -0.0916 -10.3299 -3.4650 35 1 -3.7293 -10.1730 -0.9472 36 1 -1.6646 -10.6042 1.3734 37 1 -3.3298 -11.3863 1.2442 38 1 -2.6520 -12.4694 -0.9478 39 1 -0.9865 -11.6880 -0.8197 40 1 -1.2706 -3.4999 -2.2227 41 1 -0.1510 -1.4132 -1.5702 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601076893.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:11:18 Heat of formation + Delta-G solvation = -121.281592 kcal Electronic energy + Delta-G solvation = -27180.634837 eV Core-core repulsion = 23153.092912 eV Total energy + Delta-G solvation = -4027.541925 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.71521 -37.91997 -37.76557 -36.65097 -36.47644 -35.50549 -34.29165 -34.15566 -31.49144 -29.42921 -27.98448 -27.83013 -24.24441 -23.08697 -22.51838 -21.18519 -21.02181 -20.35960 -19.21803 -18.39398 -17.55708 -17.42171 -17.04153 -16.70532 -15.89371 -15.79633 -15.45679 -15.09134 -14.59285 -14.37941 -14.17919 -13.88701 -13.79391 -13.35560 -12.66529 -12.30065 -12.14129 -12.06148 -11.91256 -11.85892 -11.78471 -11.64857 -11.62431 -11.52705 -11.36473 -11.31428 -11.14327 -10.98358 -10.78785 -10.65571 -10.52004 -10.27693 -9.88403 -9.66476 -9.51149 -9.20565 -7.60318 -7.44349 -6.90436 -4.48403 0.55499 1.88539 2.49528 2.65614 2.96550 2.97194 3.01051 3.02811 3.12326 3.59766 3.83052 4.08956 4.19178 4.44362 4.49262 4.52411 4.61635 4.63512 4.86145 5.01775 5.30030 5.33067 5.41689 5.55210 5.57102 5.63038 5.78996 5.86464 6.09284 6.19812 6.24095 6.29043 6.81630 6.84819 6.92874 7.11098 7.19816 7.46965 7.61503 7.67653 7.91052 7.91847 8.13675 8.48739 8.73007 8.81304 10.02909 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.025813 B = 0.002723 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.464394 B =10281.279507 C =10501.661814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.778 5.778 2 C 0.073 3.927 3 Si 0.914 3.086 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.263 1.263 7 C -0.448 4.448 8 H 0.083 0.917 9 C 0.118 3.882 10 C -0.225 4.225 11 C -0.068 4.068 12 C -0.237 4.237 13 C -0.510 4.510 14 S 2.569 3.431 15 O -0.960 6.960 16 O -0.953 6.953 17 N -1.103 6.103 18 C 0.194 3.806 19 H 0.131 0.869 20 C 0.458 3.542 21 O -0.497 6.497 22 O -0.510 6.510 23 C -0.166 4.166 24 C -0.167 4.167 25 C -0.164 4.164 26 C -0.079 4.079 27 C -0.167 4.167 28 H 0.286 0.714 29 H 0.099 0.901 30 H 0.094 0.906 31 H 0.130 0.870 32 H 0.110 0.890 33 H 0.418 0.582 34 H 0.409 0.591 35 H 0.118 0.882 36 H 0.104 0.896 37 H 0.100 0.900 38 H 0.098 0.902 39 H 0.111 0.889 40 H 0.096 0.904 41 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.425 -19.158 -3.719 19.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.402 5.402 2 C -0.147 4.147 3 Si 0.737 3.263 4 H -0.186 1.186 5 H -0.201 1.201 6 H -0.188 1.188 7 C -0.477 4.477 8 H 0.101 0.899 9 C 0.114 3.886 10 C -0.245 4.245 11 C -0.088 4.088 12 C -0.243 4.243 13 C -0.641 4.641 14 S 2.670 3.330 15 O -0.950 6.950 16 O -0.944 6.944 17 N -0.857 5.857 18 C 0.083 3.917 19 H 0.149 0.851 20 C 0.297 3.703 21 O -0.383 6.383 22 O -0.322 6.322 23 C -0.185 4.185 24 C -0.204 4.204 25 C -0.202 4.202 26 C -0.099 4.099 27 C -0.186 4.186 28 H 0.097 0.903 29 H 0.117 0.883 30 H 0.112 0.888 31 H 0.148 0.852 32 H 0.128 0.872 33 H 0.252 0.748 34 H 0.269 0.731 35 H 0.136 0.864 36 H 0.122 0.878 37 H 0.119 0.881 38 H 0.117 0.883 39 H 0.129 0.871 40 H 0.114 0.886 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -4.039 -18.359 -2.675 18.988 hybrid contribution 0.358 0.545 -1.400 1.545 sum -3.680 -17.814 -4.075 18.641 Atomic orbital electron populations 1.69815 1.07736 1.29976 1.32684 1.26028 0.94807 1.01724 0.92157 0.86276 0.80127 0.79729 0.80136 1.18644 1.20140 1.18798 1.19708 0.98292 0.91191 1.38528 0.89923 1.17733 0.90805 0.92173 0.87869 1.20963 1.04067 0.92537 1.06955 1.20452 0.94600 0.97160 0.96554 1.18125 1.03259 0.90433 1.12487 1.28891 1.14542 1.05249 1.15417 1.07073 0.76562 0.72391 0.77022 1.93531 1.79600 1.81960 1.39921 1.93560 1.53843 1.59549 1.87420 1.55971 1.23085 1.23275 1.83346 1.19771 0.94854 0.86315 0.90784 0.85142 1.24280 0.75790 0.78453 0.91799 1.90755 1.56862 1.42129 1.48596 1.84539 1.62152 1.45965 1.39534 1.22279 1.00045 0.91474 1.04750 1.23167 1.04037 1.02657 0.90489 1.23130 1.02469 0.93973 1.00615 1.20627 0.98180 0.92392 0.98697 1.21326 0.99380 0.96760 1.01161 0.90281 0.88300 0.88772 0.85177 0.87173 0.74780 0.73129 0.86409 0.87759 0.88138 0.88347 0.87062 0.88632 0.85914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.88 10.95 55.55 0.61 -19.27 16 2 C 0.07 1.79 5.14 -17.35 -0.09 1.70 16 3 Si 0.91 18.12 29.60 -169.99 -5.03 13.08 16 4 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 5 H -0.28 -5.35 7.11 56.52 0.40 -4.95 16 6 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 7 C -0.45 -11.60 9.05 -37.74 -0.34 -11.94 16 8 H 0.08 2.02 7.91 -52.48 -0.42 1.60 16 9 C 0.12 3.12 5.57 -106.83 -0.60 2.52 16 10 C -0.23 -5.52 9.80 -38.88 -0.38 -5.90 16 11 C -0.07 -1.55 9.67 -39.66 -0.38 -1.93 16 12 C -0.24 -5.31 5.16 -104.33 -0.54 -5.85 16 13 C -0.51 -9.09 4.90 36.01 0.18 -8.91 16 14 S 2.57 45.81 5.42 -107.50 -0.58 45.23 16 15 O -0.96 -19.22 17.39 -57.54 -1.00 -20.22 16 16 O -0.95 -20.30 18.08 -57.54 -1.04 -21.34 16 17 N -1.10 -14.09 4.85 -5.88 -0.03 -14.11 16 18 C 0.19 2.06 2.96 -69.08 -0.20 1.85 16 19 H 0.13 1.35 7.24 -51.93 -0.38 0.98 16 20 C 0.46 4.81 7.07 36.00 0.25 5.07 16 21 O -0.50 -6.65 15.71 -18.75 -0.29 -6.94 16 22 O -0.51 -3.68 11.36 -39.25 -0.45 -4.12 16 23 C -0.17 -1.36 5.37 -90.62 -0.49 -1.85 16 24 C -0.17 -1.23 10.18 -26.69 -0.27 -1.51 16 25 C -0.16 -1.08 9.45 -26.69 -0.25 -1.33 16 26 C -0.08 -1.91 9.67 -39.66 -0.38 -2.29 16 27 C -0.17 -4.36 8.70 -38.87 -0.34 -4.70 16 28 H 0.29 6.62 8.30 -40.82 -0.34 6.28 16 29 H 0.10 2.24 8.06 -52.49 -0.42 1.81 16 30 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 31 H 0.13 2.18 7.74 -51.92 -0.40 1.78 16 32 H 0.11 1.68 7.65 -51.92 -0.40 1.29 16 33 H 0.42 4.54 8.78 -34.48 -0.30 4.24 16 34 H 0.41 1.43 9.10 45.56 0.41 1.85 16 35 H 0.12 0.86 8.11 -51.93 -0.42 0.44 16 36 H 0.10 0.81 8.05 -51.93 -0.42 0.40 16 37 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.11 0.73 6.85 -51.93 -0.36 0.37 16 40 H 0.10 2.10 8.06 -52.48 -0.42 1.68 16 41 H 0.12 3.26 6.16 -52.49 -0.32 2.94 16 LS Contribution 363.71 15.07 5.48 5.48 Total: -1.00 -33.91 363.71 -10.41 -44.32 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: -4.24 Total: 12.96 kcal Atomic # 6 Polarization: -31.23 SS G_CDS: -3.83 Total: -35.07 kcal Atomic # 7 Polarization: -33.96 SS G_CDS: 0.58 Total: -33.38 kcal Atomic # 8 Polarization: -49.85 SS G_CDS: -2.78 Total: -52.63 kcal Atomic # 14 Polarization: 18.12 SS G_CDS: -5.03 Total: 13.08 kcal Atomic # 16 Polarization: 45.81 SS G_CDS: -0.58 Total: 45.23 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.91 -10.41 -44.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601076893.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.958 kcal (2) G-P(sol) polarization free energy of solvation -33.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds