Wall clock time and date at job start Tue Mar 31 2020 22:11:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30820 * 1 3 3 Si 1.86804 * 119.99728 * 2 1 4 4 H 1.48498 * 109.47075 * 239.99934 * 3 2 1 5 5 H 1.48499 * 109.46991 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47231 * 120.00040 * 3 2 1 7 7 C 1.39939 * 120.00244 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00166 * 197.84598 * 7 2 1 9 9 C 1.41398 * 120.00283 * 17.84078 * 7 2 1 10 10 C 1.40709 * 120.24734 * 204.38574 * 9 7 2 11 11 C 1.37616 * 119.74556 * 180.02562 * 10 9 7 12 12 C 1.38640 * 120.24801 * 0.02562 * 11 10 9 13 13 C 1.50701 * 119.74768 * 179.97438 * 12 11 10 14 14 S 1.81392 * 109.46985 * 90.00783 * 13 12 11 15 15 O 1.42102 * 110.54032 * 291.61899 * 14 13 12 16 16 O 1.42092 * 110.54956 * 68.37083 * 14 13 12 17 17 N 1.65600 * 104.45212 * 179.97438 * 14 13 12 18 18 C 1.46509 * 119.99865 * 64.99183 * 17 14 13 19 19 H 1.09000 * 109.47012 * 25.00961 * 18 17 14 20 20 C 1.50694 * 109.47141 * 265.00167 * 18 17 14 21 21 O 1.20824 * 120.00175 * 0.02562 * 20 18 17 22 22 O 1.34227 * 119.99687 * 179.97438 * 20 18 17 23 23 C 1.53005 * 109.46702 * 145.00510 * 18 17 14 24 24 C 1.53002 * 117.49777 * 248.74808 * 23 18 17 25 25 C 1.52999 * 117.49415 * 180.09088 * 23 18 17 26 26 C 1.38632 * 120.49849 * 0.25906 * 12 11 10 27 27 C 1.37622 * 120.25039 * 359.43619 * 26 12 11 28 28 H 0.96997 * 120.00535 * 359.97438 * 1 2 3 29 29 H 1.07994 * 120.12670 * 0.02562 * 10 9 7 30 30 H 1.07994 * 119.87962 * 180.02562 * 11 10 9 31 31 H 1.09007 * 109.46706 * 210.00371 * 13 12 11 32 32 H 1.08998 * 109.47115 * 329.99916 * 13 12 11 33 33 H 0.96999 * 120.00475 * 245.00039 * 17 14 13 34 34 H 0.96706 * 116.99927 * 180.02562 * 22 20 18 35 35 H 1.08991 * 115.55115 * 34.41888 * 23 18 17 36 36 H 1.09005 * 117.49629 * 0.02562 * 24 23 18 37 37 H 1.08999 * 117.49943 * 145.02112 * 24 23 18 38 38 H 1.09006 * 117.49583 * 214.97931 * 25 23 18 39 39 H 1.08995 * 117.50417 * 359.97374 * 25 23 18 40 40 H 1.08005 * 119.87394 * 179.69991 * 26 12 11 41 41 H 1.07996 * 120.12662 * 180.27958 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 3.0959 1.6965 -1.2125 5 1 1.2771 2.7465 0.0006 6 1 3.0959 1.6965 1.2125 7 6 2.0079 -1.2119 -0.0005 8 1 3.0490 -1.2345 0.2861 9 6 1.3521 -2.4069 -0.3762 10 6 1.8259 -3.6498 0.0825 11 6 1.1799 -4.8065 -0.2900 12 6 0.0667 -4.7502 -1.1144 13 6 -0.6317 -6.0239 -1.5157 14 16 -1.9232 -6.4132 -0.3030 15 8 -1.3443 -6.7733 0.9437 16 8 -2.9770 -5.4627 -0.3741 17 7 -2.6025 -7.8174 -0.8591 18 6 -1.8066 -9.0464 -0.9095 19 1 -1.0027 -8.9889 -0.1756 20 6 -1.2184 -9.2078 -2.2875 21 8 -1.4408 -8.3810 -3.1399 22 8 -0.4467 -10.2697 -2.5675 23 6 -2.7012 -10.2466 -0.5930 24 6 -2.4602 -10.9782 0.7290 25 6 -2.0513 -11.6317 -0.5935 26 6 -0.4053 -3.5316 -1.5770 27 6 0.2211 -2.3618 -1.2123 28 1 -0.4851 0.8400 0.0004 29 1 2.6931 -3.6960 0.7244 30 1 1.5415 -5.7616 0.0612 31 1 -1.0836 -5.8960 -2.4994 32 1 0.0912 -6.8390 -1.5512 33 1 -3.5273 -7.8262 -1.1516 34 1 -0.0916 -10.3299 -3.4650 35 1 -3.7293 -10.1730 -0.9472 36 1 -1.6646 -10.6042 1.3734 37 1 -3.3298 -11.3863 1.2442 38 1 -2.6520 -12.4694 -0.9478 39 1 -0.9865 -11.6880 -0.8197 40 1 -1.2706 -3.4999 -2.2227 41 1 -0.1510 -1.4132 -1.5702 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601076893.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:11:17 Heat of formation + Delta-G solvation = -145.540603 kcal Electronic energy + Delta-G solvation = -27181.686786 eV Core-core repulsion = 23153.092912 eV Total energy + Delta-G solvation = -4028.593874 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.50492 -39.61927 -38.62136 -38.16824 -37.22650 -37.06531 -35.97959 -35.22324 -33.25747 -31.31443 -29.58703 -28.87568 -26.03210 -23.77448 -23.09851 -23.03154 -22.19811 -21.73677 -20.53214 -19.31996 -19.25611 -18.73204 -18.08117 -17.66506 -17.25039 -17.15925 -16.70595 -16.35177 -16.07511 -15.70891 -15.57845 -15.28985 -14.89237 -14.39559 -14.12939 -13.93948 -13.75027 -13.64464 -13.41245 -13.24345 -13.16615 -13.06867 -12.81370 -12.76091 -12.64788 -12.47087 -12.29986 -12.24046 -12.15545 -11.98150 -11.62611 -11.40122 -11.37581 -11.16309 -11.01407 -10.66550 -9.50523 -9.31960 -8.72618 -6.42544 -0.88575 0.84891 1.03963 1.08779 1.37398 1.48750 1.50319 1.52843 2.04834 2.17320 2.59735 2.76977 2.95281 3.12666 3.42531 3.62667 3.69883 3.81646 3.85183 3.97930 4.02264 4.20590 4.37442 4.40217 4.46253 4.63037 4.73122 4.92744 4.96916 5.06028 5.06637 5.22353 5.23843 5.31775 5.37153 5.58476 5.58597 5.80071 5.85955 5.99854 6.01779 6.24982 6.58024 6.82616 6.90644 6.96284 8.24059 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.025813 B = 0.002723 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.464394 B =10281.279507 C =10501.661814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.818 5.818 2 C 0.032 3.968 3 Si 0.989 3.011 4 H -0.258 1.258 5 H -0.268 1.268 6 H -0.256 1.256 7 C -0.487 4.487 8 H 0.086 0.914 9 C 0.086 3.914 10 C -0.242 4.242 11 C -0.075 4.075 12 C -0.236 4.236 13 C -0.515 4.515 14 S 2.598 3.402 15 O -0.982 6.982 16 O -0.992 6.992 17 N -1.089 6.089 18 C 0.182 3.818 19 H 0.135 0.865 20 C 0.466 3.534 21 O -0.530 6.530 22 O -0.497 6.497 23 C -0.177 4.177 24 C -0.173 4.173 25 C -0.148 4.148 26 C -0.093 4.093 27 C -0.193 4.193 28 H 0.292 0.708 29 H 0.110 0.890 30 H 0.127 0.873 31 H 0.143 0.857 32 H 0.140 0.860 33 H 0.429 0.571 34 H 0.429 0.571 35 H 0.128 0.872 36 H 0.097 0.903 37 H 0.111 0.889 38 H 0.115 0.885 39 H 0.113 0.887 40 H 0.109 0.891 41 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.292 -21.640 -4.080 22.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C -0.185 4.185 3 Si 0.809 3.191 4 H -0.182 1.182 5 H -0.192 1.192 6 H -0.180 1.180 7 C -0.515 4.515 8 H 0.104 0.896 9 C 0.083 3.917 10 C -0.262 4.262 11 C -0.094 4.094 12 C -0.240 4.240 13 C -0.646 4.646 14 S 2.697 3.303 15 O -0.971 6.971 16 O -0.982 6.982 17 N -0.847 5.847 18 C 0.072 3.928 19 H 0.152 0.848 20 C 0.306 3.694 21 O -0.419 6.419 22 O -0.310 6.310 23 C -0.197 4.197 24 C -0.210 4.210 25 C -0.186 4.186 26 C -0.112 4.112 27 C -0.213 4.213 28 H 0.103 0.897 29 H 0.128 0.872 30 H 0.145 0.855 31 H 0.161 0.839 32 H 0.159 0.841 33 H 0.266 0.734 34 H 0.291 0.709 35 H 0.146 0.854 36 H 0.116 0.884 37 H 0.130 0.870 38 H 0.133 0.867 39 H 0.132 0.868 40 H 0.127 0.873 41 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -3.869 -20.845 -3.046 21.419 hybrid contribution 0.234 0.952 -1.342 1.662 sum -3.635 -19.893 -4.387 20.693 Atomic orbital electron populations 1.69877 1.09339 1.31228 1.33799 1.26935 0.95503 1.05055 0.90980 0.85145 0.78695 0.74948 0.80304 1.18190 1.19193 1.18016 1.19972 0.98726 0.92234 1.40600 0.89620 1.18096 0.91503 0.93464 0.88665 1.21226 1.04818 0.92713 1.07418 1.20851 0.94400 0.98012 0.96154 1.18498 1.02923 0.91641 1.10940 1.28956 1.15372 1.03996 1.16241 1.05613 0.75720 0.72614 0.76339 1.93512 1.80082 1.82530 1.41007 1.93518 1.55018 1.61820 1.87844 1.55388 1.23633 1.22517 1.83173 1.20070 0.95344 0.86002 0.91368 0.84763 1.24098 0.75549 0.78525 0.91211 1.90759 1.58233 1.43445 1.49473 1.84484 1.61136 1.44228 1.41152 1.22301 1.00293 0.91241 1.05845 1.23265 1.04431 1.02697 0.90600 1.23216 1.02748 0.93191 0.99405 1.20906 0.98554 0.92712 0.99039 1.21330 1.00461 0.97010 1.02501 0.89668 0.87207 0.85484 0.83886 0.84144 0.73389 0.70878 0.85414 0.88411 0.87035 0.86689 0.86841 0.87315 0.87474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.50 10.95 21.82 0.24 -43.26 16 2 C 0.03 1.60 5.14 85.26 0.44 2.04 16 3 Si 0.99 37.82 29.60 68.60 2.03 39.85 16 4 H -0.26 -9.58 7.11 99.48 0.71 -8.87 16 5 H -0.27 -9.71 7.11 99.48 0.71 -9.01 16 6 H -0.26 -9.40 7.11 99.48 0.71 -8.69 16 7 C -0.49 -26.21 9.05 23.46 0.21 -26.00 16 8 H 0.09 4.35 7.91 -2.91 -0.02 4.33 16 9 C 0.09 4.73 5.57 -21.29 -0.12 4.61 16 10 C -0.24 -12.08 9.80 22.73 0.22 -11.86 16 11 C -0.07 -3.36 9.67 22.22 0.21 -3.15 16 12 C -0.24 -10.43 5.16 -19.67 -0.10 -10.53 16 13 C -0.51 -17.40 4.90 71.24 0.35 -17.05 16 14 S 2.60 89.16 5.42 -56.49 -0.31 88.86 16 15 O -0.98 -37.89 17.39 -127.65 -2.22 -40.11 16 16 O -0.99 -41.85 18.08 -127.65 -2.31 -44.16 16 17 N -1.09 -25.55 4.85 -172.51 -0.84 -26.39 16 18 C 0.18 3.38 2.96 44.24 0.13 3.51 16 19 H 0.13 2.41 7.24 -2.39 -0.02 2.40 16 20 C 0.47 8.40 7.07 71.23 0.50 8.90 16 21 O -0.53 -12.83 15.71 21.97 0.35 -12.49 16 22 O -0.50 -5.38 11.36 -51.39 -0.58 -5.96 16 23 C -0.18 -2.38 5.37 -10.79 -0.06 -2.44 16 24 C -0.17 -2.09 10.18 30.62 0.31 -1.78 16 25 C -0.15 -1.43 9.45 30.62 0.29 -1.14 16 26 C -0.09 -4.56 9.67 22.22 0.21 -4.34 16 27 C -0.19 -10.59 8.70 22.73 0.20 -10.39 16 28 H 0.29 14.02 8.30 -92.71 -0.77 13.26 16 29 H 0.11 5.05 8.06 -2.91 -0.02 5.03 16 30 H 0.13 4.74 8.06 -2.91 -0.02 4.72 16 31 H 0.14 4.53 7.74 -2.39 -0.02 4.51 16 32 H 0.14 3.87 7.65 -2.39 -0.02 3.85 16 33 H 0.43 8.48 8.78 -96.74 -0.85 7.63 16 34 H 0.43 1.44 9.10 -74.05 -0.67 0.76 16 35 H 0.13 1.47 8.11 -2.39 -0.02 1.45 16 36 H 0.10 1.32 8.05 -2.38 -0.02 1.30 16 37 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.11 0.77 8.14 -2.38 -0.02 0.75 16 39 H 0.11 1.06 6.85 -2.39 -0.02 1.05 16 40 H 0.11 4.89 8.06 -2.91 -0.02 4.86 16 41 H 0.11 6.06 6.16 -2.91 -0.02 6.04 16 Total: -1.00 -75.59 363.71 -1.26 -76.85 By element: Atomic # 1 Polarization: 36.87 SS G_CDS: -0.43 Total: 36.44 kcal Atomic # 6 Polarization: -72.43 SS G_CDS: 2.81 Total: -69.63 kcal Atomic # 7 Polarization: -69.05 SS G_CDS: -0.60 Total: -69.65 kcal Atomic # 8 Polarization: -97.96 SS G_CDS: -4.77 Total: -102.72 kcal Atomic # 14 Polarization: 37.82 SS G_CDS: 2.03 Total: 39.85 kcal Atomic # 16 Polarization: 89.16 SS G_CDS: -0.31 Total: 88.86 kcal Total: -75.59 -1.26 -76.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601076893.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.686 kcal (2) G-P(sol) polarization free energy of solvation -75.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds