Wall clock time and date at job start Tue Mar 31 2020 22:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86804 * 119.99583 * 2 1 4 4 H 1.48505 * 109.46582 * 240.00045 * 3 2 1 5 5 H 1.48493 * 109.47152 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.46850 * 120.00261 * 3 2 1 7 7 C 1.39944 * 119.99857 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99342 * 191.84765 * 7 2 1 9 9 C 1.41396 * 120.00367 * 11.85210 * 7 2 1 10 10 C 1.40712 * 120.23928 * 27.82066 * 9 7 2 11 11 C 1.37626 * 119.73908 * 180.02562 * 10 9 7 12 12 C 1.38633 * 120.25044 * 0.02562 * 11 10 9 13 13 C 1.50694 * 119.74981 * 179.97438 * 12 11 10 14 14 S 1.81410 * 109.47124 * 89.99863 * 13 12 11 15 15 O 1.42103 * 110.54146 * 61.12483 * 14 13 12 16 16 O 1.42099 * 110.54382 * 284.37235 * 14 13 12 17 17 N 1.65598 * 104.44716 * 172.74656 * 14 13 12 18 18 C 1.46497 * 120.00033 * 65.28678 * 17 14 13 19 19 C 1.50697 * 112.84813 * 294.24670 * 18 17 14 20 20 O 1.20825 * 120.00056 * 141.75628 * 19 18 17 21 21 O 1.34231 * 120.00463 * 321.75863 * 19 18 17 22 22 C 1.53779 * 113.61449 * 163.05426 * 18 17 14 23 23 C 1.54046 * 86.98507 * 270.83628 * 22 18 17 24 24 C 1.53781 * 87.07951 * 334.56802 * 23 22 18 25 25 C 1.38643 * 120.49991 * 0.24852 * 12 11 10 26 26 C 1.37622 * 120.24606 * 359.45392 * 25 12 11 27 27 H 0.97000 * 120.00370 * 359.97438 * 1 2 3 28 28 H 1.07998 * 120.13646 * 359.97438 * 10 9 7 29 29 H 1.08002 * 119.87407 * 180.02562 * 11 10 9 30 30 H 1.09001 * 109.47458 * 330.00058 * 13 12 11 31 31 H 1.09000 * 109.47269 * 209.99279 * 13 12 11 32 32 H 0.96998 * 120.00048 * 245.55731 * 17 14 13 33 33 H 0.96696 * 117.00627 * 180.02562 * 21 19 18 34 34 H 1.08996 * 113.61844 * 25.42995 * 22 18 17 35 35 H 1.09007 * 113.61584 * 156.33044 * 22 18 17 36 36 H 1.09006 * 113.61960 * 220.02344 * 23 22 18 37 37 H 1.08995 * 113.69132 * 89.12995 * 23 22 18 38 38 H 1.08997 * 113.61534 * 270.88652 * 24 23 22 39 39 H 1.08997 * 113.69553 * 139.98404 * 24 23 22 40 40 H 1.07995 * 119.87103 * 179.70445 * 25 12 11 41 41 H 1.08001 * 120.12391 * 180.27082 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.0959 1.6965 -1.2126 5 1 1.2772 2.7464 -0.0006 6 1 3.0959 1.6965 1.2125 7 6 2.0080 -1.2120 0.0005 8 1 3.0708 -1.2218 0.1926 9 6 1.3236 -2.4236 -0.2504 10 6 0.1604 -2.4296 -1.0421 11 6 -0.4978 -3.6147 -1.2794 12 6 -0.0192 -4.7993 -0.7412 13 6 -0.7492 -6.0904 -1.0077 14 16 -0.0893 -6.8586 -2.5128 15 8 1.2909 -7.1583 -2.3557 16 8 -0.5651 -6.1817 -3.6680 17 7 -0.8244 -8.3412 -2.5764 18 6 -2.2740 -8.4324 -2.7666 19 6 -3.0531 -7.8711 -1.6052 20 8 -4.0686 -7.2473 -1.8040 21 8 -2.6189 -8.0639 -0.3498 22 6 -2.7504 -9.8250 -3.2123 23 6 -2.5370 -9.3450 -4.6605 24 6 -2.7496 -7.9156 -4.1347 25 6 1.1227 -4.8043 0.0450 26 6 1.8005 -3.6319 0.2903 27 1 -0.4851 0.8400 0.0004 28 1 -0.2149 -1.5078 -1.4613 29 1 -1.3906 -3.6219 -1.8871 30 1 -1.8118 -5.8865 -1.1398 31 1 -0.6111 -6.7667 -0.1642 32 1 -0.2956 -9.1491 -2.4837 33 1 -3.1523 -7.6853 0.3624 34 1 -2.0804 -10.6316 -2.9150 35 1 -3.7933 -10.0283 -2.9689 36 1 -3.3138 -9.6768 -5.3495 37 1 -1.5307 -9.5262 -5.0381 38 1 -3.7922 -7.5979 -4.1430 39 1 -2.0796 -7.1807 -4.5807 40 1 1.4839 -5.7322 0.4630 41 1 2.6924 -3.6388 0.8994 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601077152.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:10:12 Heat of formation + Delta-G solvation = -145.807513 kcal Electronic energy + Delta-G solvation = -27823.550457 eV Core-core repulsion = 23794.945009 eV Total energy + Delta-G solvation = -4028.605448 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.03044 -39.68615 -39.48617 -38.16150 -37.22516 -37.05249 -35.95761 -33.87517 -33.25119 -31.32841 -29.59175 -27.74050 -26.86449 -26.03648 -23.23050 -23.05246 -22.19565 -21.03249 -20.19223 -19.31473 -19.26392 -18.83198 -18.41426 -17.57593 -17.23977 -16.94767 -16.64589 -16.37628 -15.93385 -15.70966 -15.65001 -15.52932 -14.71607 -14.39473 -13.95895 -13.75328 -13.65853 -13.59760 -13.52693 -13.26658 -13.21333 -13.10971 -13.02135 -12.79700 -12.65449 -12.62197 -12.50087 -12.32938 -12.14823 -11.86523 -11.78280 -11.61624 -11.37596 -11.30110 -11.09495 -10.65490 -9.51744 -9.27920 -8.68504 -6.44843 -0.89852 0.82554 0.85846 1.03064 1.37374 1.48924 1.50741 1.65177 1.89520 2.17788 2.59808 2.73332 3.05695 3.22884 3.34427 3.60820 3.64366 3.75769 3.79034 4.02163 4.07992 4.37273 4.47548 4.60002 4.64569 4.71475 4.73753 4.94629 4.95746 5.06276 5.06604 5.17361 5.21621 5.31175 5.37391 5.47041 5.58223 5.78571 5.96264 5.98754 6.01491 6.25042 6.58092 6.82929 6.83435 6.89645 8.27018 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.022821 B = 0.003028 C = 0.002959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.649558 B = 9243.627753 C = 9460.156996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.031 3.969 3 Si 0.989 3.011 4 H -0.260 1.260 5 H -0.267 1.267 6 H -0.256 1.256 7 C -0.490 4.490 8 H 0.083 0.917 9 C 0.086 3.914 10 C -0.186 4.186 11 C -0.099 4.099 12 C -0.227 4.227 13 C -0.524 4.524 14 S 2.596 3.404 15 O -0.981 6.981 16 O -0.984 6.984 17 N -1.075 6.075 18 C 0.140 3.860 19 C 0.468 3.532 20 O -0.527 6.527 21 O -0.501 6.501 22 C -0.101 4.101 23 C -0.126 4.126 24 C -0.165 4.165 25 C -0.073 4.073 26 C -0.238 4.238 27 H 0.290 0.710 28 H 0.108 0.892 29 H 0.105 0.895 30 H 0.122 0.878 31 H 0.165 0.835 32 H 0.435 0.565 33 H 0.428 0.572 34 H 0.115 0.885 35 H 0.114 0.886 36 H 0.100 0.900 37 H 0.092 0.908 38 H 0.105 0.895 39 H 0.090 0.910 40 H 0.130 0.870 41 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.995 -18.998 -3.197 20.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.184 4.184 3 Si 0.809 3.191 4 H -0.185 1.185 5 H -0.191 1.191 6 H -0.180 1.180 7 C -0.519 4.519 8 H 0.101 0.899 9 C 0.083 3.917 10 C -0.206 4.206 11 C -0.118 4.118 12 C -0.231 4.231 13 C -0.655 4.655 14 S 2.695 3.305 15 O -0.971 6.971 16 O -0.973 6.973 17 N -0.836 5.836 18 C 0.048 3.952 19 C 0.309 3.691 20 O -0.415 6.415 21 O -0.315 6.315 22 C -0.140 4.140 23 C -0.163 4.163 24 C -0.203 4.203 25 C -0.092 4.092 26 C -0.258 4.258 27 H 0.101 0.899 28 H 0.125 0.875 29 H 0.123 0.877 30 H 0.140 0.860 31 H 0.183 0.817 32 H 0.274 0.726 33 H 0.291 0.709 34 H 0.133 0.867 35 H 0.132 0.868 36 H 0.119 0.881 37 H 0.111 0.889 38 H 0.124 0.876 39 H 0.109 0.891 40 H 0.147 0.853 41 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -6.738 -18.429 -4.231 20.073 hybrid contribution -0.379 1.156 1.293 1.776 sum -7.117 -17.273 -2.938 18.911 Atomic orbital electron populations 1.69842 1.09041 1.30872 1.35156 1.26867 0.95655 1.04786 0.91123 0.85149 0.78656 0.75135 0.80185 1.18473 1.19137 1.18045 1.19960 0.96776 0.91611 1.43551 0.89862 1.18094 0.91852 0.93460 0.88298 1.21360 0.99714 0.96846 1.02665 1.20903 0.98753 0.92970 0.99205 1.18468 1.01081 0.91985 1.11598 1.29125 1.09216 1.06178 1.20977 1.05640 0.73872 0.73659 0.77332 1.93530 1.32523 1.83197 1.87850 1.93484 1.81706 1.75026 1.47122 1.55079 1.13228 1.25514 1.89770 1.21395 0.79971 1.04029 0.89810 1.24060 0.83996 0.76136 0.84919 1.90756 1.26423 1.38150 1.86164 1.84557 1.56704 1.73534 1.16709 1.23281 1.03988 0.91203 0.95506 1.22871 1.04042 0.92908 0.96518 1.23817 1.03967 1.00814 0.91734 1.20859 0.94154 0.97730 0.96459 1.21293 1.03871 0.93320 1.07320 0.89892 0.87451 0.87703 0.85960 0.81696 0.72568 0.70948 0.86664 0.86757 0.88110 0.88895 0.87648 0.89145 0.85250 0.87182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.13 10.84 21.83 0.24 -42.89 16 2 C 0.03 1.55 5.24 85.26 0.45 2.00 16 3 Si 0.99 38.00 29.58 68.60 2.03 40.02 16 4 H -0.26 -9.84 7.11 99.48 0.71 -9.13 16 5 H -0.27 -9.71 7.11 99.48 0.71 -9.00 16 6 H -0.26 -9.45 7.11 99.48 0.71 -8.74 16 7 C -0.49 -26.39 9.07 23.46 0.21 -26.18 16 8 H 0.08 4.26 7.87 -2.91 -0.02 4.24 16 9 C 0.09 4.71 5.56 -21.29 -0.12 4.59 16 10 C -0.19 -10.13 8.67 22.73 0.20 -9.93 16 11 C -0.10 -4.80 9.67 22.22 0.21 -4.58 16 12 C -0.23 -9.76 5.16 -19.68 -0.10 -9.86 16 13 C -0.52 -16.66 4.41 71.23 0.31 -16.34 16 14 S 2.60 83.25 5.42 -56.49 -0.31 82.95 16 15 O -0.98 -36.89 18.08 -127.65 -2.31 -39.20 16 16 O -0.98 -37.62 15.16 -127.65 -1.93 -39.55 16 17 N -1.07 -22.17 5.42 -153.10 -0.83 -23.00 16 18 C 0.14 2.71 1.25 3.38 0.00 2.71 16 19 C 0.47 10.05 5.22 71.23 0.37 10.42 16 20 O -0.53 -14.45 16.65 21.97 0.37 -14.09 16 21 O -0.50 -7.97 11.16 -51.43 -0.57 -8.55 16 22 C -0.10 -1.11 7.38 31.21 0.23 -0.88 16 23 C -0.13 -1.65 8.00 31.21 0.25 -1.40 16 24 C -0.16 -3.54 6.93 31.12 0.22 -3.33 16 25 C -0.07 -3.19 9.67 22.22 0.21 -2.98 16 26 C -0.24 -11.77 9.80 22.73 0.22 -11.55 16 27 H 0.29 13.75 8.30 -92.71 -0.77 12.98 16 28 H 0.11 6.09 6.19 -2.91 -0.02 6.07 16 29 H 0.10 4.71 8.06 -2.91 -0.02 4.69 16 30 H 0.12 3.67 6.27 -2.39 -0.01 3.66 16 31 H 0.17 4.06 7.29 -2.39 -0.02 4.04 16 32 H 0.44 6.30 8.75 -96.75 -0.85 5.45 16 33 H 0.43 3.92 9.10 -74.06 -0.67 3.25 16 34 H 0.12 0.71 8.09 -2.39 -0.02 0.69 16 35 H 0.11 0.99 8.09 -2.38 -0.02 0.97 16 36 H 0.10 0.94 8.14 -2.38 -0.02 0.92 16 37 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.11 2.27 7.35 -2.39 -0.02 2.25 16 39 H 0.09 2.51 5.53 -2.39 -0.01 2.50 16 40 H 0.13 4.71 8.06 -2.91 -0.02 4.68 16 41 H 0.11 5.02 8.06 -2.91 -0.02 5.00 16 Total: -1.00 -74.89 352.95 -1.07 -75.96 By element: Atomic # 1 Polarization: 36.08 SS G_CDS: -0.42 Total: 35.66 kcal Atomic # 6 Polarization: -69.99 SS G_CDS: 2.68 Total: -67.31 kcal Atomic # 7 Polarization: -65.30 SS G_CDS: -0.59 Total: -65.89 kcal Atomic # 8 Polarization: -96.93 SS G_CDS: -4.45 Total: -101.38 kcal Atomic # 14 Polarization: 38.00 SS G_CDS: 2.03 Total: 40.02 kcal Atomic # 16 Polarization: 83.25 SS G_CDS: -0.31 Total: 82.95 kcal Total: -74.89 -1.07 -75.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601077152.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.845 kcal (2) G-P(sol) polarization free energy of solvation -74.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds