Wall clock time and date at job start Tue Mar 31 2020 22:03:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86792 * 119.99960 * 2 1 4 4 H 1.48502 * 109.47108 * 90.00489 * 3 2 1 5 5 H 1.48503 * 109.47395 * 210.00009 * 3 2 1 6 6 H 1.48497 * 109.47543 * 330.00031 * 3 2 1 7 7 C 1.39947 * 119.99850 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00209 * 155.76707 * 7 2 1 9 9 C 1.41393 * 120.00180 * 335.76497 * 7 2 1 10 10 C 1.40734 * 120.24337 * 329.50376 * 9 7 2 11 11 C 1.37599 * 119.74341 * 180.02562 * 10 9 7 12 12 C 1.38653 * 120.25336 * 0.02562 * 11 10 9 13 13 C 1.38619 * 120.49855 * 0.02562 * 12 11 10 14 14 C 1.37641 * 120.24699 * 359.66757 * 13 12 11 15 15 S 1.76197 * 120.12945 * 180.32189 * 14 13 12 16 16 O 1.42105 * 106.40230 * 358.62842 * 15 14 13 17 17 O 1.42095 * 106.40383 * 131.55103 * 15 14 13 18 18 N 1.65604 * 107.21851 * 245.09359 * 15 14 13 19 19 C 1.46500 * 120.00316 * 71.30217 * 18 15 14 20 20 H 1.08998 * 109.47196 * 339.68592 * 19 18 15 21 21 C 1.52990 * 109.47501 * 219.68095 * 19 18 15 22 22 C 1.50705 * 109.47213 * 64.99940 * 21 19 18 23 23 O 1.20826 * 119.99450 * 0.02562 * 22 21 19 24 24 O 1.34226 * 120.00119 * 180.02562 * 22 21 19 25 25 C 1.52998 * 109.46927 * 99.68056 * 19 18 15 26 26 C 1.53002 * 117.50051 * 2.31403 * 25 19 18 27 27 C 1.53001 * 117.49952 * 293.65767 * 25 19 18 28 28 H 0.97001 * 119.99594 * 175.74325 * 1 2 3 29 29 H 1.07992 * 120.12951 * 359.97438 * 10 9 7 30 30 H 1.08004 * 119.87252 * 180.02562 * 11 10 9 31 31 H 1.07999 * 119.75634 * 179.97438 * 12 11 10 32 32 H 1.07996 * 119.87525 * 179.97438 * 13 12 11 33 33 H 0.97004 * 119.99904 * 251.30326 * 18 15 14 34 34 H 1.09004 * 109.47602 * 185.00213 * 21 19 18 35 35 H 1.09004 * 109.47349 * 305.00428 * 21 19 18 36 36 H 0.96700 * 116.99959 * 180.02562 * 24 22 21 37 37 H 1.09002 * 115.55285 * 147.98733 * 25 19 18 38 38 H 1.09001 * 117.50056 * 0.02562 * 26 25 19 39 39 H 1.09001 * 117.50001 * 145.02188 * 26 25 19 40 40 H 1.09004 * 117.50149 * 214.98053 * 27 25 19 41 41 H 1.09000 * 117.50253 * 359.97179 * 27 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.4898 2.0463 1.4001 5 1 3.5398 1.4402 -0.7000 6 1 1.4397 2.6527 -0.7000 7 6 2.0080 -1.2120 -0.0005 8 1 3.0166 -1.2531 -0.3844 9 6 1.3945 -2.3828 0.5016 10 6 0.4390 -2.2965 1.5312 11 6 -0.1513 -3.4426 2.0125 12 6 0.1925 -4.6789 1.4874 13 6 1.1331 -4.7758 0.4738 14 6 1.7317 -3.6422 -0.0274 15 16 2.9206 -3.7683 -1.3216 16 8 3.0637 -5.1541 -1.6014 17 8 2.5477 -2.8115 -2.3037 18 7 4.3722 -3.2637 -0.7045 19 6 5.0856 -4.0979 0.2657 20 1 4.3874 -4.7964 0.7270 21 6 5.7051 -3.2084 1.3452 22 6 4.6096 -2.5330 2.1294 23 8 3.4521 -2.7422 1.8534 24 8 4.9199 -1.6991 3.1344 25 6 6.1909 -4.8786 -0.4482 26 6 6.3825 -4.6236 -1.9446 27 6 5.7633 -5.9388 -1.4651 28 1 -0.4849 -0.8378 -0.0624 29 1 0.1706 -1.3348 1.9426 30 1 -0.8851 -3.3788 2.8024 31 1 -0.2755 -5.5733 1.8714 32 1 1.3936 -5.7440 0.0724 33 1 4.7502 -2.4157 -0.9856 34 1 6.3092 -3.8188 2.0166 35 1 6.3349 -2.4525 0.8759 36 1 4.1831 -1.2899 3.6086 37 1 7.0820 -5.0815 0.1459 38 1 5.7213 -3.8994 -2.4204 39 1 7.3995 -4.6591 -2.3351 40 1 6.3732 -6.8390 -1.5403 41 1 4.6945 -6.0805 -1.6252 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601078139.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:59 Heat of formation + Delta-G solvation = -117.886217 kcal Electronic energy + Delta-G solvation = -29758.593619 eV Core-core repulsion = 25731.198929 eV Total energy + Delta-G solvation = -4027.394690 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.85217 -38.10678 -37.65767 -36.18866 -35.58754 -34.85797 -33.94471 -33.66192 -30.40434 -30.00836 -29.31780 -25.31470 -25.02738 -22.14923 -21.68739 -21.14617 -20.97246 -20.09247 -18.78864 -18.16705 -17.47203 -16.89833 -16.43808 -15.99116 -15.72384 -15.43001 -15.26038 -14.72033 -14.31559 -14.12545 -13.70936 -13.55670 -13.17251 -12.98891 -12.67216 -12.38678 -12.10171 -11.98887 -11.72213 -11.50267 -11.43287 -11.14630 -11.06685 -11.02598 -10.90513 -10.83617 -10.63185 -10.51014 -10.41364 -10.14911 -9.98465 -9.77643 -9.71047 -9.47428 -9.12390 -8.83705 -8.01196 -7.57506 -7.34746 -4.66493 1.54243 2.41199 2.72236 2.86292 3.07743 3.21961 3.25815 3.36858 3.79919 3.92121 4.07883 4.46633 4.64891 4.79949 4.99703 5.12056 5.19574 5.29824 5.33222 5.40975 5.49469 5.63122 5.77632 5.85464 5.92084 6.01940 6.13803 6.17633 6.28947 6.35286 6.41055 6.73665 6.87441 7.03013 7.07554 7.27102 7.42904 7.44875 7.58520 7.69775 7.77351 7.98834 8.15230 8.42811 8.53237 8.75587 9.92284 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.011080 B = 0.006597 C = 0.006016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2526.561183 B = 4243.466344 C = 4653.262201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.784 5.784 2 C 0.043 3.957 3 Si 1.065 2.935 4 H -0.275 1.275 5 H -0.273 1.273 6 H -0.274 1.274 7 C -0.499 4.499 8 H 0.079 0.921 9 C 0.209 3.791 10 C -0.198 4.198 11 C -0.060 4.060 12 C -0.262 4.262 13 C 0.009 3.991 14 C -0.753 4.753 15 S 2.698 3.302 16 O -0.995 6.995 17 O -0.968 6.968 18 N -1.110 6.110 19 C 0.205 3.795 20 H 0.097 0.903 21 C -0.112 4.112 22 C 0.445 3.555 23 O -0.445 6.445 24 O -0.532 6.532 25 C -0.175 4.175 26 C -0.176 4.176 27 C -0.194 4.194 28 H 0.301 0.699 29 H 0.102 0.898 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.104 0.896 33 H 0.410 0.590 34 H 0.107 0.893 35 H 0.105 0.895 36 H 0.407 0.593 37 H 0.109 0.891 38 H 0.092 0.908 39 H 0.088 0.912 40 H 0.086 0.914 41 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.876 -3.536 3.751 12.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.406 5.406 2 C -0.181 4.181 3 Si 0.888 3.112 4 H -0.200 1.200 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.527 4.527 8 H 0.097 0.903 9 C 0.204 3.796 10 C -0.217 4.217 11 C -0.079 4.079 12 C -0.283 4.283 13 C -0.011 4.011 14 C -0.849 4.849 15 S 2.797 3.203 16 O -0.985 6.985 17 O -0.958 6.958 18 N -0.864 5.864 19 C 0.096 3.904 20 H 0.115 0.885 21 C -0.152 4.152 22 C 0.284 3.716 23 O -0.327 6.327 24 O -0.346 6.346 25 C -0.195 4.195 26 C -0.213 4.213 27 C -0.231 4.231 28 H 0.115 0.885 29 H 0.120 0.880 30 H 0.108 0.892 31 H 0.109 0.891 32 H 0.122 0.878 33 H 0.244 0.756 34 H 0.125 0.875 35 H 0.124 0.876 36 H 0.266 0.734 37 H 0.127 0.873 38 H 0.111 0.889 39 H 0.106 0.894 40 H 0.104 0.896 41 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 11.404 -2.601 2.627 11.988 hybrid contribution -0.308 -0.856 1.129 1.450 sum 11.095 -3.457 3.756 12.213 Atomic orbital electron populations 1.70422 1.08207 1.34447 1.27568 1.26975 0.95628 1.04304 0.91194 0.83638 0.75814 0.73750 0.77996 1.20040 1.19831 1.19845 1.20661 1.02388 0.94006 1.35675 0.90314 1.16665 0.86700 0.89870 0.86330 1.21172 1.03242 0.96671 1.00662 1.20742 0.96692 0.93439 0.97059 1.20351 1.06810 0.96103 1.05003 1.20244 0.92667 0.95458 0.92780 1.29683 1.27142 1.00079 1.27988 1.01105 0.72485 0.72330 0.74359 1.93298 1.86031 1.34182 1.85002 1.93544 1.81825 1.62299 1.58164 1.55794 1.39492 1.32277 1.58834 1.19853 0.92895 0.90602 0.87049 0.88468 1.21595 0.96445 1.00092 0.97049 1.23347 0.91028 0.78245 0.79019 1.91105 1.20292 1.57681 1.63600 1.84419 1.44919 1.58670 1.46546 1.22717 1.00413 1.04009 0.92350 1.22880 1.01590 1.00961 0.95892 1.23723 1.05518 0.91959 1.01891 0.88537 0.87964 0.89225 0.89062 0.87790 0.75602 0.87455 0.87645 0.73436 0.87340 0.88940 0.89373 0.89581 0.83951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.41 12.53 55.55 0.70 -19.71 16 2 C 0.04 1.05 4.93 -17.34 -0.09 0.96 16 3 Si 1.06 21.04 30.00 -169.99 -5.10 15.94 16 4 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 5 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 6 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 7 C -0.50 -12.37 6.55 -37.74 -0.25 -12.61 16 8 H 0.08 1.86 5.77 -52.49 -0.30 1.55 16 9 C 0.21 5.19 2.81 -106.82 -0.30 4.89 16 10 C -0.20 -4.83 7.90 -38.87 -0.31 -5.13 16 11 C -0.06 -1.36 10.02 -39.66 -0.40 -1.76 16 12 C -0.26 -5.80 10.05 -39.29 -0.39 -6.19 16 13 C 0.01 0.19 9.54 -39.66 -0.38 -0.18 16 14 C -0.75 -17.77 4.59 -38.87 -0.18 -17.95 16 15 S 2.70 57.71 4.91 -107.50 -0.53 57.18 16 16 O -0.99 -21.13 13.12 -57.17 -0.75 -21.88 16 17 O -0.97 -24.22 16.63 -57.17 -0.95 -25.17 16 18 N -1.11 -18.48 2.06 -4.90 -0.01 -18.49 16 19 C 0.20 2.84 2.02 -67.94 -0.14 2.70 16 20 H 0.10 1.51 7.75 -51.93 -0.40 1.11 16 21 C -0.11 -1.29 5.39 -27.89 -0.15 -1.44 16 22 C 0.44 6.59 8.19 36.01 0.29 6.89 16 23 O -0.44 -8.46 10.59 -18.75 -0.20 -8.66 16 24 O -0.53 -6.84 13.42 -39.25 -0.53 -7.37 16 25 C -0.17 -2.10 5.74 -90.62 -0.52 -2.62 16 26 C -0.18 -2.24 9.84 -26.70 -0.26 -2.50 16 27 C -0.19 -2.68 10.05 -26.70 -0.27 -2.94 16 28 H 0.30 8.12 6.75 -40.82 -0.28 7.85 16 29 H 0.10 2.55 6.84 -52.49 -0.36 2.19 16 30 H 0.09 1.78 8.06 -52.48 -0.42 1.36 16 31 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 32 H 0.10 2.18 7.32 -52.49 -0.38 1.80 16 33 H 0.41 6.29 8.34 -34.47 -0.29 6.00 16 34 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.41 4.32 9.10 45.56 0.41 4.74 16 37 H 0.11 1.02 8.06 -51.93 -0.42 0.60 16 38 H 0.09 1.30 6.88 -51.93 -0.36 0.95 16 39 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 40 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.14 2.42 4.57 -51.93 -0.24 2.18 16 LS Contribution 342.28 15.07 5.16 5.16 Total: -1.00 -31.96 342.28 -9.48 -41.44 By element: Atomic # 1 Polarization: 23.40 SS G_CDS: -3.94 Total: 19.46 kcal Atomic # 6 Polarization: -34.57 SS G_CDS: -3.33 Total: -37.90 kcal Atomic # 7 Polarization: -38.89 SS G_CDS: 0.69 Total: -38.20 kcal Atomic # 8 Polarization: -60.65 SS G_CDS: -2.43 Total: -63.08 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.10 Total: 15.94 kcal Atomic # 16 Polarization: 57.71 SS G_CDS: -0.53 Total: 57.18 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.96 -9.48 -41.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601078139.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.442 kcal (2) G-P(sol) polarization free energy of solvation -31.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds