Wall clock time and date at job start Tue Mar 31 2020 22:03:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86796 * 120.00376 * 2 1 4 4 H 1.48504 * 109.47179 * 180.02562 * 3 2 1 5 5 H 1.48492 * 109.47194 * 300.00702 * 3 2 1 6 6 H 1.48498 * 109.47081 * 60.00514 * 3 2 1 7 7 C 1.39946 * 119.99538 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00026 * 168.07365 * 7 2 1 9 9 C 1.41402 * 120.00270 * 348.07015 * 7 2 1 10 10 C 1.40731 * 120.24340 * 330.45865 * 9 7 2 11 11 C 1.37601 * 119.74439 * 180.27053 * 10 9 7 12 12 C 1.38656 * 120.24673 * 359.70889 * 11 10 9 13 13 C 1.38612 * 120.49908 * 0.02562 * 12 11 10 14 14 C 1.37634 * 120.25465 * 359.97302 * 13 12 11 15 15 S 1.76195 * 120.13122 * 180.02562 * 14 13 12 16 16 O 1.42103 * 106.40042 * 133.42919 * 15 14 13 17 17 O 1.42102 * 106.40390 * 0.51432 * 15 14 13 18 18 N 1.65596 * 107.22185 * 246.96914 * 15 14 13 19 19 C 1.46494 * 119.99975 * 65.24422 * 18 15 14 20 20 H 1.08998 * 109.47300 * 25.00342 * 19 18 15 21 21 C 1.52998 * 109.47383 * 145.00027 * 19 18 15 22 22 C 1.53003 * 109.47114 * 295.00393 * 21 19 18 23 23 C 1.53005 * 117.49690 * 243.61842 * 22 21 19 24 24 C 1.53005 * 60.00134 * 252.50790 * 23 22 21 25 25 C 1.50701 * 109.47476 * 265.00234 * 19 18 15 26 26 O 1.20826 * 119.99522 * 359.72253 * 25 19 18 27 27 O 1.34228 * 120.00419 * 180.02562 * 25 19 18 28 28 H 0.97000 * 119.99858 * 359.97438 * 1 2 3 29 29 H 1.07999 * 120.12993 * 0.02562 * 10 9 7 30 30 H 1.07997 * 119.87858 * 179.72524 * 11 10 9 31 31 H 1.07993 * 119.75008 * 180.02562 * 12 11 10 32 32 H 1.08013 * 119.87177 * 179.97438 * 13 12 11 33 33 H 0.97001 * 119.99909 * 245.24178 * 18 15 14 34 34 H 1.09007 * 109.47146 * 54.99754 * 21 19 18 35 35 H 1.08999 * 109.47541 * 175.00141 * 21 19 18 36 36 H 1.08996 * 115.55044 * 29.32641 * 22 21 19 37 37 H 1.09002 * 117.50184 * 359.97438 * 23 22 21 38 38 H 1.09002 * 117.49741 * 145.02076 * 23 22 21 39 39 H 1.08991 * 117.49797 * 252.51221 * 24 23 22 40 40 H 1.08998 * 117.49554 * 107.48595 * 24 23 22 41 41 H 0.96696 * 117.00311 * 179.72662 * 27 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6176 0.0000 4 1 3.7024 1.3462 -0.0006 5 1 1.8835 2.3964 -1.2123 6 1 1.8837 2.3963 1.2125 7 6 2.0079 -1.2120 -0.0005 8 1 3.0704 -1.2221 -0.1938 9 6 1.3237 -2.4235 0.2520 10 6 0.1820 -2.4345 1.0747 11 6 -0.4726 -3.6201 1.3182 12 6 -0.0148 -4.7999 0.7515 13 6 1.1055 -4.7998 -0.0648 14 6 1.7760 -3.6257 -0.3221 15 16 3.1992 -3.6293 -1.3608 16 8 3.0357 -2.5488 -2.2692 17 8 3.3875 -4.9743 -1.7789 18 7 4.5007 -3.2484 -0.4105 19 6 4.9187 -4.1588 0.6584 20 1 4.5937 -5.1717 0.4207 21 6 6.4430 -4.1294 0.7864 22 6 7.0730 -4.6883 -0.4909 23 6 7.8947 -5.9733 -0.3696 24 6 8.5977 -4.6354 -0.6084 25 6 4.2967 -3.7243 1.9604 26 8 3.5820 -2.7506 1.9932 27 8 4.5416 -4.4152 3.0848 28 1 -0.4850 0.8401 0.0004 29 1 -0.1767 -1.5166 1.5166 30 1 -1.3464 -3.6318 1.9528 31 1 -0.5349 -5.7257 0.9476 32 1 1.4536 -5.7248 -0.5007 33 1 4.9863 -2.4224 -0.5615 34 1 6.7753 -3.1020 0.9359 35 1 6.7480 -4.7374 1.6381 36 1 6.4929 -4.5457 -1.4026 37 1 7.9868 -6.4202 0.6203 38 1 7.8551 -6.6765 -1.2015 39 1 9.0204 -4.4585 -1.5973 40 1 9.1518 -4.2024 0.2244 41 1 4.1236 -4.0959 3.8962 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601078386.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:50 Heat of formation + Delta-G solvation = -121.545163 kcal Electronic energy + Delta-G solvation = -28880.040352 eV Core-core repulsion = 24852.486998 eV Total energy + Delta-G solvation = -4027.553354 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.98727 -37.80312 -37.49400 -36.27757 -35.85293 -34.88763 -34.71716 -33.78157 -30.17625 -29.69317 -29.44475 -25.51568 -25.25387 -22.42686 -21.60210 -21.15920 -21.00936 -20.50520 -18.88954 -17.68994 -17.57642 -16.99492 -16.61742 -16.21948 -15.59833 -15.36894 -15.26203 -14.84965 -14.32766 -14.25619 -14.10834 -13.24852 -13.18954 -13.09234 -12.70911 -12.64541 -12.07825 -11.82342 -11.56289 -11.51935 -11.41878 -11.24044 -11.21320 -11.14042 -11.06436 -11.04240 -10.96685 -10.66855 -10.46406 -10.39307 -10.26734 -9.97851 -9.80886 -9.51296 -9.34284 -8.89771 -7.95558 -7.48030 -6.94636 -4.61789 1.45108 2.40874 2.62538 2.80242 3.02311 3.08774 3.18118 3.19998 3.74623 3.84545 3.85420 4.49420 4.57131 4.71923 4.74465 4.86776 5.09418 5.12481 5.25933 5.42349 5.53003 5.57242 5.65583 5.72101 5.76455 5.87390 6.05283 6.08065 6.13951 6.28988 6.29654 6.45948 6.84737 6.88331 7.01953 7.16885 7.35136 7.43323 7.57176 7.75969 7.88500 8.00948 8.29390 8.40453 8.62589 8.76148 9.99450 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.011698 B = 0.005457 C = 0.004892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2393.018500 B = 5129.710222 C = 5721.674410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.780 5.780 2 C 0.077 3.923 3 Si 0.916 3.084 4 H -0.256 1.256 5 H -0.270 1.270 6 H -0.272 1.272 7 C -0.421 4.421 8 H 0.087 0.913 9 C 0.208 3.792 10 C -0.148 4.148 11 C -0.082 4.082 12 C -0.252 4.252 13 C -0.008 4.008 14 C -0.778 4.778 15 S 2.693 3.307 16 O -0.957 6.957 17 O -0.995 6.995 18 N -1.099 6.099 19 C 0.177 3.823 20 H 0.127 0.873 21 C -0.085 4.085 22 C -0.152 4.152 23 C -0.179 4.179 24 C -0.181 4.181 25 C 0.438 3.562 26 O -0.454 6.454 27 O -0.526 6.526 28 H 0.285 0.715 29 H 0.120 0.880 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.105 0.895 33 H 0.417 0.583 34 H 0.079 0.921 35 H 0.089 0.911 36 H 0.113 0.887 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.093 0.907 40 H 0.093 0.907 41 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.939 -5.306 4.609 13.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.404 5.404 2 C -0.143 4.143 3 Si 0.740 3.260 4 H -0.179 1.179 5 H -0.195 1.195 6 H -0.197 1.197 7 C -0.449 4.449 8 H 0.105 0.895 9 C 0.203 3.797 10 C -0.168 4.168 11 C -0.101 4.101 12 C -0.272 4.272 13 C -0.028 4.028 14 C -0.874 4.874 15 S 2.792 3.208 16 O -0.948 6.948 17 O -0.985 6.985 18 N -0.853 5.853 19 C 0.066 3.934 20 H 0.144 0.856 21 C -0.124 4.124 22 C -0.170 4.170 23 C -0.216 4.216 24 C -0.218 4.218 25 C 0.275 3.725 26 O -0.336 6.336 27 O -0.338 6.338 28 H 0.096 0.904 29 H 0.138 0.862 30 H 0.109 0.891 31 H 0.110 0.890 32 H 0.123 0.877 33 H 0.251 0.749 34 H 0.097 0.903 35 H 0.107 0.893 36 H 0.131 0.869 37 H 0.114 0.886 38 H 0.112 0.888 39 H 0.111 0.889 40 H 0.111 0.889 41 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges 11.699 -5.327 3.322 13.277 hybrid contribution -0.455 1.412 1.248 1.939 sum 11.244 -3.914 4.570 12.753 Atomic orbital electron populations 1.69798 1.07740 1.29846 1.33034 1.25969 0.94854 1.01874 0.91602 0.86118 0.81184 0.80127 0.78573 1.17928 1.19523 1.19666 1.19798 0.96568 0.90549 1.38012 0.89473 1.16819 0.89235 0.89503 0.84128 1.21454 0.98176 0.96521 1.00670 1.20857 0.97606 0.93610 0.98024 1.20415 1.01766 0.96863 1.08186 1.20215 0.93862 0.94965 0.93708 1.29707 1.25505 1.01088 1.31130 1.01362 0.73159 0.72553 0.73766 1.93559 1.85404 1.54777 1.61048 1.93457 1.86403 1.37670 1.81015 1.55805 1.49903 1.32772 1.46850 1.20019 0.95523 0.95152 0.82708 0.85597 1.21377 0.91025 1.02643 0.97328 1.22300 0.93337 1.01573 0.99819 1.23062 1.04405 0.91000 1.03128 1.22960 0.94647 1.01317 1.02897 1.24230 0.80132 0.82114 0.86071 1.90949 1.32334 1.24910 1.85382 1.84474 1.71190 1.58630 1.19531 0.90384 0.86176 0.89102 0.88988 0.87696 0.74888 0.90259 0.89288 0.86896 0.88644 0.88753 0.88866 0.88873 0.73666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.82 10.96 55.55 0.61 -19.21 16 2 C 0.08 1.93 5.23 -17.34 -0.09 1.83 16 3 Si 0.92 18.87 29.58 -169.99 -5.03 13.84 16 4 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 5 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 6 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 7 C -0.42 -10.85 6.67 -37.74 -0.25 -11.10 16 8 H 0.09 2.13 5.91 -52.49 -0.31 1.82 16 9 C 0.21 5.40 4.18 -106.82 -0.45 4.95 16 10 C -0.15 -3.79 8.65 -38.87 -0.34 -4.13 16 11 C -0.08 -1.90 10.02 -39.66 -0.40 -2.30 16 12 C -0.25 -5.63 10.05 -39.29 -0.39 -6.03 16 13 C -0.01 -0.17 9.53 -39.66 -0.38 -0.55 16 14 C -0.78 -18.78 5.45 -38.87 -0.21 -18.99 16 15 S 2.69 58.23 4.96 -107.50 -0.53 57.70 16 16 O -0.96 -23.70 16.44 -57.17 -0.94 -24.65 16 17 O -0.99 -21.76 16.30 -57.17 -0.93 -22.69 16 18 N -1.10 -18.62 3.62 -5.89 -0.02 -18.64 16 19 C 0.18 2.56 2.80 -69.09 -0.19 2.37 16 20 H 0.13 1.81 7.49 -51.93 -0.39 1.42 16 21 C -0.08 -0.93 5.06 -26.73 -0.14 -1.06 16 22 C -0.15 -1.67 5.61 -90.61 -0.51 -2.18 16 23 C -0.18 -1.70 10.18 -26.73 -0.27 -1.97 16 24 C -0.18 -1.65 10.25 -26.72 -0.27 -1.93 16 25 C 0.44 6.90 7.70 36.01 0.28 7.18 16 26 O -0.45 -8.98 14.28 -18.75 -0.27 -9.25 16 27 O -0.53 -6.49 13.23 -39.25 -0.52 -7.01 16 28 H 0.29 6.51 8.30 -40.82 -0.34 6.17 16 29 H 0.12 3.13 6.33 -52.49 -0.33 2.80 16 30 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 31 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 32 H 0.11 2.21 7.32 -52.48 -0.38 1.82 16 33 H 0.42 6.35 8.64 -34.47 -0.30 6.05 16 34 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.09 0.84 7.73 -51.93 -0.40 0.44 16 36 H 0.11 1.41 7.69 -51.93 -0.40 1.01 16 37 H 0.10 0.80 8.03 -51.93 -0.42 0.39 16 38 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.41 3.64 9.10 45.56 0.41 4.06 16 LS Contribution 357.29 15.07 5.38 5.38 Total: -1.00 -32.89 357.29 -10.05 -42.93 By element: Atomic # 1 Polarization: 19.69 SS G_CDS: -4.19 Total: 15.51 kcal Atomic # 6 Polarization: -30.29 SS G_CDS: -3.61 Total: -33.91 kcal Atomic # 7 Polarization: -38.44 SS G_CDS: 0.59 Total: -37.85 kcal Atomic # 8 Polarization: -60.94 SS G_CDS: -2.66 Total: -63.60 kcal Atomic # 14 Polarization: 18.87 SS G_CDS: -5.03 Total: 13.84 kcal Atomic # 16 Polarization: 58.23 SS G_CDS: -0.53 Total: 57.70 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.89 -10.05 -42.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601078386.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.611 kcal (2) G-P(sol) polarization free energy of solvation -32.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds