Wall clock time and date at job start Tue Mar 31 2020 22:03:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86796 * 120.00376 * 2 1 4 4 H 1.48504 * 109.47179 * 180.02562 * 3 2 1 5 5 H 1.48492 * 109.47194 * 300.00702 * 3 2 1 6 6 H 1.48498 * 109.47081 * 60.00514 * 3 2 1 7 7 C 1.39946 * 119.99538 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00026 * 168.07365 * 7 2 1 9 9 C 1.41402 * 120.00270 * 348.07015 * 7 2 1 10 10 C 1.40731 * 120.24340 * 330.45865 * 9 7 2 11 11 C 1.37601 * 119.74439 * 180.27053 * 10 9 7 12 12 C 1.38656 * 120.24673 * 359.70889 * 11 10 9 13 13 C 1.38612 * 120.49908 * 0.02562 * 12 11 10 14 14 C 1.37634 * 120.25465 * 359.97302 * 13 12 11 15 15 S 1.76195 * 120.13122 * 180.02562 * 14 13 12 16 16 O 1.42103 * 106.40042 * 133.42919 * 15 14 13 17 17 O 1.42102 * 106.40390 * 0.51432 * 15 14 13 18 18 N 1.65596 * 107.22185 * 246.96914 * 15 14 13 19 19 C 1.46494 * 119.99975 * 65.24422 * 18 15 14 20 20 H 1.08998 * 109.47300 * 25.00342 * 19 18 15 21 21 C 1.52998 * 109.47383 * 145.00027 * 19 18 15 22 22 C 1.53003 * 109.47114 * 295.00393 * 21 19 18 23 23 C 1.53005 * 117.49690 * 243.61842 * 22 21 19 24 24 C 1.53005 * 60.00134 * 252.50790 * 23 22 21 25 25 C 1.50701 * 109.47476 * 265.00234 * 19 18 15 26 26 O 1.20826 * 119.99522 * 359.72253 * 25 19 18 27 27 O 1.34228 * 120.00419 * 180.02562 * 25 19 18 28 28 H 0.97000 * 119.99858 * 359.97438 * 1 2 3 29 29 H 1.07999 * 120.12993 * 0.02562 * 10 9 7 30 30 H 1.07997 * 119.87858 * 179.72524 * 11 10 9 31 31 H 1.07993 * 119.75008 * 180.02562 * 12 11 10 32 32 H 1.08013 * 119.87177 * 179.97438 * 13 12 11 33 33 H 0.97001 * 119.99909 * 245.24178 * 18 15 14 34 34 H 1.09007 * 109.47146 * 54.99754 * 21 19 18 35 35 H 1.08999 * 109.47541 * 175.00141 * 21 19 18 36 36 H 1.08996 * 115.55044 * 29.32641 * 22 21 19 37 37 H 1.09002 * 117.50184 * 359.97438 * 23 22 21 38 38 H 1.09002 * 117.49741 * 145.02076 * 23 22 21 39 39 H 1.08991 * 117.49797 * 252.51221 * 24 23 22 40 40 H 1.08998 * 117.49554 * 107.48595 * 24 23 22 41 41 H 0.96696 * 117.00311 * 179.72662 * 27 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6176 0.0000 4 1 3.7024 1.3462 -0.0006 5 1 1.8835 2.3964 -1.2123 6 1 1.8837 2.3963 1.2125 7 6 2.0079 -1.2120 -0.0005 8 1 3.0704 -1.2221 -0.1938 9 6 1.3237 -2.4235 0.2520 10 6 0.1820 -2.4345 1.0747 11 6 -0.4726 -3.6201 1.3182 12 6 -0.0148 -4.7999 0.7515 13 6 1.1055 -4.7998 -0.0648 14 6 1.7760 -3.6257 -0.3221 15 16 3.1992 -3.6293 -1.3608 16 8 3.0357 -2.5488 -2.2692 17 8 3.3875 -4.9743 -1.7789 18 7 4.5007 -3.2484 -0.4105 19 6 4.9187 -4.1588 0.6584 20 1 4.5937 -5.1717 0.4207 21 6 6.4430 -4.1294 0.7864 22 6 7.0730 -4.6883 -0.4909 23 6 7.8947 -5.9733 -0.3696 24 6 8.5977 -4.6354 -0.6084 25 6 4.2967 -3.7243 1.9604 26 8 3.5820 -2.7506 1.9932 27 8 4.5416 -4.4152 3.0848 28 1 -0.4850 0.8401 0.0004 29 1 -0.1767 -1.5166 1.5166 30 1 -1.3464 -3.6318 1.9528 31 1 -0.5349 -5.7257 0.9476 32 1 1.4536 -5.7248 -0.5007 33 1 4.9863 -2.4224 -0.5615 34 1 6.7753 -3.1020 0.9359 35 1 6.7480 -4.7374 1.6381 36 1 6.4929 -4.5457 -1.4026 37 1 7.9868 -6.4202 0.6203 38 1 7.8551 -6.6765 -1.2015 39 1 9.0204 -4.4585 -1.5973 40 1 9.1518 -4.2024 0.2244 41 1 4.1236 -4.0959 3.8962 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601078386.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:49 Heat of formation + Delta-G solvation = -144.308784 kcal Electronic energy + Delta-G solvation = -28881.027457 eV Core-core repulsion = 24852.486998 eV Total energy + Delta-G solvation = -4028.540459 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.20070 -39.31516 -38.69606 -38.04733 -37.01436 -36.69898 -35.95574 -35.59419 -31.98648 -31.34616 -30.80894 -27.30662 -26.38088 -23.41156 -23.12487 -22.91464 -22.27239 -21.36922 -20.45966 -19.47181 -18.92179 -18.51822 -18.00639 -17.74764 -17.02222 -16.83248 -16.63337 -16.04901 -15.97209 -15.77860 -15.06705 -15.00676 -14.88657 -14.46617 -14.23649 -13.83251 -13.61975 -13.26221 -13.10359 -12.99504 -12.94532 -12.83704 -12.80931 -12.69031 -12.43638 -12.31254 -12.22313 -12.19492 -12.12216 -11.78104 -11.60979 -11.24022 -11.14863 -10.99961 -10.74402 -10.41071 -9.79208 -9.34043 -8.76116 -6.51089 -0.23098 0.57414 1.01013 1.33860 1.40532 1.48778 1.50688 1.96929 2.16387 2.41521 2.67267 2.97561 2.99549 3.51022 3.60836 3.79300 3.93827 4.01066 4.18030 4.25848 4.29851 4.35096 4.51182 4.58046 4.73724 4.75882 4.89130 4.94162 5.00495 5.09034 5.16186 5.17831 5.35435 5.38699 5.45497 5.58505 5.73317 5.80562 5.86970 6.03293 6.06431 6.16851 6.54358 6.75759 6.91029 7.17521 8.21156 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.011698 B = 0.005457 C = 0.004892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2393.018500 B = 5129.710222 C = 5721.674410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.033 3.967 3 Si 0.974 3.026 4 H -0.250 1.250 5 H -0.267 1.267 6 H -0.259 1.259 7 C -0.449 4.449 8 H 0.090 0.910 9 C 0.191 3.809 10 C -0.181 4.181 11 C -0.081 4.081 12 C -0.253 4.253 13 C -0.019 4.019 14 C -0.794 4.794 15 S 2.716 3.284 16 O -0.994 6.994 17 O -0.999 6.999 18 N -1.087 6.087 19 C 0.170 3.830 20 H 0.129 0.871 21 C -0.073 4.073 22 C -0.174 4.174 23 C -0.177 4.177 24 C -0.170 4.170 25 C 0.444 3.556 26 O -0.499 6.499 27 O -0.512 6.512 28 H 0.292 0.708 29 H 0.105 0.895 30 H 0.117 0.883 31 H 0.125 0.875 32 H 0.123 0.877 33 H 0.425 0.575 34 H 0.087 0.913 35 H 0.111 0.889 36 H 0.092 0.908 37 H 0.110 0.890 38 H 0.093 0.907 39 H 0.096 0.904 40 H 0.108 0.892 41 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.725 -6.284 5.545 16.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.183 4.183 3 Si 0.794 3.206 4 H -0.173 1.173 5 H -0.192 1.192 6 H -0.184 1.184 7 C -0.477 4.477 8 H 0.107 0.893 9 C 0.187 3.813 10 C -0.201 4.201 11 C -0.100 4.100 12 C -0.273 4.273 13 C -0.038 4.038 14 C -0.889 4.889 15 S 2.812 3.188 16 O -0.984 6.984 17 O -0.989 6.989 18 N -0.845 5.845 19 C 0.060 3.940 20 H 0.146 0.854 21 C -0.112 4.112 22 C -0.192 4.192 23 C -0.214 4.214 24 C -0.206 4.206 25 C 0.282 3.718 26 O -0.385 6.385 27 O -0.325 6.325 28 H 0.103 0.897 29 H 0.123 0.877 30 H 0.135 0.865 31 H 0.143 0.857 32 H 0.141 0.859 33 H 0.261 0.739 34 H 0.106 0.894 35 H 0.129 0.871 36 H 0.111 0.889 37 H 0.128 0.872 38 H 0.111 0.889 39 H 0.114 0.886 40 H 0.126 0.874 41 H 0.282 0.718 Dipole moment (debyes) X Y Z Total from point charges 13.471 -6.334 4.291 15.492 hybrid contribution -0.987 1.520 1.009 2.074 sum 12.484 -4.814 5.300 14.391 Atomic orbital electron populations 1.69842 1.08914 1.30974 1.34164 1.26810 0.95649 1.04869 0.91017 0.85272 0.80133 0.76219 0.78992 1.17339 1.19154 1.18374 1.20011 0.96870 0.91344 1.39478 0.89252 1.17044 0.89588 0.90296 0.84408 1.21483 0.99506 0.96963 1.02118 1.21187 0.97929 0.93139 0.97727 1.20808 1.01430 0.97826 1.07249 1.20568 0.94069 0.95362 0.93844 1.30100 1.27072 1.01038 1.30680 1.00563 0.73088 0.71857 0.73272 1.93504 1.86186 1.56018 1.62721 1.93443 1.86509 1.37744 1.81209 1.55329 1.48159 1.33700 1.47362 1.20345 0.97958 0.94292 0.81361 0.85390 1.21363 0.87899 1.03729 0.98194 1.22241 0.94499 1.03523 0.98977 1.23171 1.03429 0.90827 1.03945 1.23045 0.93110 1.00768 1.03725 1.24390 0.79041 0.81354 0.87015 1.90960 1.34380 1.27006 1.86157 1.84423 1.70793 1.57680 1.19576 0.89719 0.87748 0.86531 0.85718 0.85871 0.73864 0.89420 0.87072 0.88936 0.87206 0.88871 0.88558 0.87388 0.71761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -42.64 10.96 21.83 0.24 -42.40 16 2 C 0.03 1.69 5.23 85.26 0.45 2.13 16 3 Si 0.97 39.00 29.58 68.60 2.03 41.03 16 4 H -0.25 -9.65 7.11 99.48 0.71 -8.94 16 5 H -0.27 -10.41 7.11 99.48 0.71 -9.71 16 6 H -0.26 -9.75 7.11 99.48 0.71 -9.05 16 7 C -0.45 -23.73 6.67 23.46 0.16 -23.57 16 8 H 0.09 4.49 5.91 -2.91 -0.02 4.48 16 9 C 0.19 10.14 4.18 -21.29 -0.09 10.05 16 10 C -0.18 -9.46 8.65 22.73 0.20 -9.26 16 11 C -0.08 -3.72 10.02 22.22 0.22 -3.50 16 12 C -0.25 -10.94 10.05 22.46 0.23 -10.71 16 13 C -0.02 -0.85 9.53 22.22 0.21 -0.63 16 14 C -0.79 -38.60 5.45 22.73 0.12 -38.48 16 15 S 2.72 117.93 4.96 -56.49 -0.28 117.65 16 16 O -0.99 -50.19 16.44 -128.00 -2.10 -52.29 16 17 O -1.00 -43.16 16.30 -128.00 -2.09 -45.24 16 18 N -1.09 -36.49 3.62 -172.54 -0.63 -37.12 16 19 C 0.17 4.71 2.80 44.25 0.12 4.83 16 20 H 0.13 3.50 7.49 -2.39 -0.02 3.49 16 21 C -0.07 -1.43 5.06 30.59 0.15 -1.27 16 22 C -0.17 -3.48 5.61 -10.79 -0.06 -3.54 16 23 C -0.18 -2.91 10.18 30.60 0.31 -2.59 16 24 C -0.17 -2.64 10.25 30.60 0.31 -2.33 16 25 C 0.44 13.46 7.70 71.24 0.55 14.00 16 26 O -0.50 -19.79 14.28 21.96 0.31 -19.48 16 27 O -0.51 -11.50 13.23 -51.39 -0.68 -12.18 16 28 H 0.29 13.74 8.30 -92.71 -0.77 12.97 16 29 H 0.10 5.68 6.33 -2.91 -0.02 5.66 16 30 H 0.12 4.60 8.06 -2.91 -0.02 4.58 16 31 H 0.12 4.50 8.06 -2.91 -0.02 4.48 16 32 H 0.12 5.00 7.32 -2.90 -0.02 4.98 16 33 H 0.43 12.90 8.64 -96.75 -0.84 12.06 16 34 H 0.09 1.58 8.14 -2.38 -0.02 1.56 16 35 H 0.11 1.71 7.73 -2.39 -0.02 1.69 16 36 H 0.09 2.24 7.69 -2.39 -0.02 2.22 16 37 H 0.11 1.48 8.03 -2.39 -0.02 1.46 16 38 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.42 6.72 9.10 -74.06 -0.67 6.05 16 Total: -1.00 -71.91 357.29 -0.72 -72.64 By element: Atomic # 1 Polarization: 42.68 SS G_CDS: -0.41 Total: 42.27 kcal Atomic # 6 Polarization: -67.75 SS G_CDS: 2.89 Total: -64.87 kcal Atomic # 7 Polarization: -79.13 SS G_CDS: -0.39 Total: -79.52 kcal Atomic # 8 Polarization: -124.64 SS G_CDS: -4.56 Total: -129.19 kcal Atomic # 14 Polarization: 39.00 SS G_CDS: 2.03 Total: 41.03 kcal Atomic # 16 Polarization: 117.93 SS G_CDS: -0.28 Total: 117.65 kcal Total: -71.91 -0.72 -72.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601078386.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.674 kcal (2) G-P(sol) polarization free energy of solvation -71.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds