Wall clock time and date at job start Tue Mar 31 2020 22:24:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30642 * 1 3 3 Si 1.86798 * 120.00269 * 2 1 4 4 H 1.48498 * 109.46999 * 83.32843 * 3 2 1 5 5 H 1.48501 * 109.47169 * 203.33114 * 3 2 1 6 6 H 1.48502 * 109.46997 * 323.33045 * 3 2 1 7 7 C 1.40309 * 119.99906 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99957 * 15.49449 * 7 2 1 9 9 C 1.40537 * 120.00186 * 195.49270 * 7 2 1 10 10 C 1.44190 * 123.71440 * 23.83265 * 9 7 2 11 11 C 1.32761 * 114.42926 * 180.02562 * 10 9 7 12 12 S 1.75467 * 111.36758 * 359.97438 * 11 10 9 13 13 C 1.39548 * 123.71721 * 203.53578 * 9 7 2 14 14 C 1.46246 * 125.22487 * 359.97438 * 13 9 7 15 15 O 1.21759 * 119.99819 * 352.61453 * 14 13 9 16 16 N 1.34777 * 119.99625 * 172.60715 * 14 13 9 17 17 C 1.46496 * 119.99917 * 1.61185 * 16 14 13 18 18 C 1.50699 * 109.47250 * 79.63384 * 17 16 14 19 19 O 1.20818 * 119.99980 * 0.02562 * 18 17 16 20 20 O 1.34236 * 119.99821 * 179.97438 * 18 17 16 21 21 C 1.46503 * 119.99658 * 181.60785 * 16 14 13 22 22 C 1.53175 * 109.54197 * 59.55910 * 21 16 14 23 23 C 1.53093 * 109.16029 * 183.14986 * 22 21 16 24 24 O 1.42899 * 109.41315 * 57.61077 * 23 22 21 25 25 C 1.42902 * 114.10028 * 298.83662 * 24 23 22 26 26 C 1.53090 * 109.41018 * 61.15990 * 25 24 23 27 27 H 0.96999 * 119.99860 * 174.72758 * 1 2 3 28 28 H 1.07999 * 122.78197 * 359.97438 * 10 9 7 29 29 H 1.08006 * 124.31601 * 179.97438 * 11 10 9 30 30 H 1.09008 * 109.47032 * 199.63138 * 17 16 14 31 31 H 1.08997 * 109.47706 * 319.63063 * 17 16 14 32 32 H 0.96701 * 116.99783 * 179.97438 * 20 18 17 33 33 H 1.09003 * 109.53818 * 179.82596 * 21 16 14 34 34 H 1.09003 * 109.52165 * 303.05454 * 22 21 16 35 35 H 1.09002 * 109.52119 * 63.24376 * 22 21 16 36 36 H 1.08995 * 109.48503 * 297.62593 * 23 22 21 37 37 H 1.09002 * 109.47879 * 177.58998 * 23 22 21 38 38 H 1.09007 * 109.48129 * 301.18174 * 25 24 23 39 39 H 1.08999 * 109.49041 * 181.15091 * 25 24 23 40 40 H 1.09002 * 109.52518 * 182.48975 * 26 25 24 41 41 H 1.09004 * 109.52525 * 62.30122 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 2.3471 2.1277 1.3906 5 1 3.6013 1.4035 -0.5545 6 1 1.5155 2.6079 -0.8361 7 6 2.0079 -1.2151 -0.0005 8 1 1.4974 -2.1333 -0.2508 9 6 3.3750 -1.2374 0.3245 10 6 4.0242 -0.2280 1.1237 11 6 5.3219 -0.4311 1.3167 12 16 5.8642 -1.8993 0.5234 13 6 4.2524 -2.2421 -0.0855 14 6 3.8869 -3.4008 -0.8995 15 8 2.7174 -3.6168 -1.1605 16 7 4.8446 -4.2294 -1.3607 17 6 6.2484 -3.9894 -1.0173 18 6 6.5193 -4.4994 0.3746 19 8 5.6311 -5.0113 1.0140 20 8 7.7478 -4.3859 0.9037 21 6 4.4816 -5.3701 -2.2053 22 6 3.7765 -4.8681 -3.4690 23 6 3.3315 -6.0696 -4.3070 24 8 2.4761 -6.9043 -3.5237 25 6 3.0966 -7.4412 -2.3537 26 6 3.5322 -6.2948 -1.4373 27 1 -0.4850 -0.8365 -0.0772 28 1 3.4985 0.6231 1.5307 29 1 5.9622 0.2239 1.8890 30 1 6.8904 -4.5115 -1.7269 31 1 6.4550 -2.9201 -1.0591 32 1 7.8731 -4.7272 1.7997 33 1 5.3814 -5.9197 -2.4820 34 1 2.9050 -4.2763 -3.1891 35 1 4.4641 -4.2534 -4.0500 36 1 4.2068 -6.6384 -4.6205 37 1 2.7913 -5.7192 -5.1866 38 1 3.9690 -8.0280 -2.6416 39 1 2.3875 -8.0790 -1.8261 40 1 4.0452 -6.7004 -0.5652 41 1 2.6558 -5.7318 -1.1163 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601078989.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:45 Heat of formation + Delta-G solvation = -135.198912 kcal Electronic energy + Delta-G solvation = -28780.134566 eV Core-core repulsion = 24751.989141 eV Total energy + Delta-G solvation = -4028.145425 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.34389 -39.36796 -38.00265 -36.47014 -35.74310 -34.67668 -33.43022 -32.43593 -30.88443 -29.08136 -27.86098 -26.61244 -24.16018 -23.32266 -22.14247 -21.65677 -20.75665 -19.66750 -18.97286 -17.84635 -17.11776 -16.98152 -16.34053 -16.03244 -15.79597 -15.63298 -15.07004 -14.89179 -14.69858 -14.28458 -13.89694 -13.57905 -13.38644 -13.27809 -12.99418 -12.67616 -12.65977 -12.27058 -12.12678 -11.79063 -11.69652 -11.41159 -11.18504 -11.14609 -10.98908 -10.80404 -10.63630 -10.24102 -10.17902 -10.09662 -9.95618 -9.61642 -9.41581 -9.35464 -8.38081 -8.22418 -7.84465 -7.61195 -7.33547 -4.69662 1.82946 2.44457 2.85869 2.93191 3.09434 3.14443 3.29470 3.34652 3.49474 3.66007 3.78040 4.06010 4.32005 4.89577 4.98133 5.05460 5.08357 5.22772 5.29875 5.37039 5.43476 5.51496 5.59565 5.64636 5.71026 5.78396 5.83482 5.95424 6.15728 6.21807 6.38298 6.64220 6.70000 6.80045 6.83948 6.98374 7.23474 7.25009 7.35716 7.39483 8.04591 8.06945 8.25242 8.40815 8.59884 9.39383 9.68568 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.011154 B = 0.005611 C = 0.004079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2509.747960 B = 4988.637404 C = 6863.319561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.778 5.778 2 C 0.033 3.967 3 Si 1.067 2.933 4 H -0.273 1.273 5 H -0.255 1.255 6 H -0.282 1.282 7 C -0.421 4.421 8 H 0.114 0.886 9 C 0.114 3.886 10 C -0.156 4.156 11 C -0.196 4.196 12 S -0.015 6.015 13 C -0.438 4.438 14 C 0.612 3.388 15 O -0.541 6.541 16 N -0.613 5.613 17 C 0.113 3.887 18 C 0.461 3.539 19 O -0.497 6.497 20 O -0.519 6.519 21 C 0.165 3.835 22 C -0.174 4.174 23 C 0.069 3.931 24 O -0.382 6.382 25 C 0.068 3.932 26 C -0.173 4.173 27 H 0.296 0.704 28 H 0.122 0.878 29 H 0.142 0.858 30 H 0.115 0.885 31 H 0.133 0.867 32 H 0.403 0.597 33 H 0.072 0.928 34 H 0.103 0.897 35 H 0.069 0.931 36 H 0.044 0.956 37 H 0.092 0.908 38 H 0.043 0.957 39 H 0.091 0.909 40 H 0.071 0.929 41 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.702 -6.270 -3.653 14.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.192 4.192 3 Si 0.892 3.108 4 H -0.200 1.200 5 H -0.180 1.180 6 H -0.208 1.208 7 C -0.452 4.452 8 H 0.131 0.869 9 C 0.104 3.896 10 C -0.188 4.188 11 C -0.329 4.329 12 S 0.244 5.756 13 C -0.556 4.556 14 C 0.412 3.588 15 O -0.423 6.423 16 N -0.347 5.347 17 C -0.015 4.015 18 C 0.298 3.702 19 O -0.383 6.383 20 O -0.331 6.331 21 C 0.062 3.938 22 C -0.212 4.212 23 C -0.008 4.008 24 O -0.301 6.301 25 C -0.009 4.009 26 C -0.212 4.212 27 H 0.109 0.891 28 H 0.140 0.860 29 H 0.160 0.840 30 H 0.133 0.867 31 H 0.150 0.850 32 H 0.261 0.739 33 H 0.090 0.910 34 H 0.121 0.879 35 H 0.088 0.912 36 H 0.062 0.938 37 H 0.110 0.890 38 H 0.061 0.939 39 H 0.109 0.891 40 H 0.089 0.911 41 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 12.582 -5.464 -4.092 14.315 hybrid contribution -0.600 -1.072 1.176 1.701 sum 11.981 -6.537 -2.916 13.956 Atomic orbital electron populations 1.70405 1.08193 1.34185 1.27054 1.27691 0.95847 1.04933 0.90684 0.83783 0.76293 0.72763 0.77990 1.19997 1.17992 1.20832 1.21134 0.93220 0.97651 1.33150 0.86876 1.17885 0.93053 0.89128 0.89552 1.21417 0.94570 1.00674 1.02129 1.25356 0.98853 1.03071 1.05664 1.82965 1.13922 1.22611 1.56091 1.22422 0.93734 1.10710 1.28747 1.16684 0.83872 0.80376 0.77866 1.90625 1.17687 1.73615 1.60403 1.47539 1.04752 1.29349 1.53060 1.21175 0.85669 1.04355 0.90329 1.23959 0.79863 0.75742 0.90600 1.90727 1.45179 1.40787 1.61637 1.84504 1.34118 1.77964 1.36497 1.20825 0.96737 0.86328 0.89944 1.22683 1.03393 0.99181 0.95993 1.22503 0.93974 0.90617 0.93729 1.87921 1.39453 1.65700 1.37002 1.22529 0.97416 0.94797 0.86143 1.22667 1.02519 0.97327 0.98658 0.89140 0.86027 0.84033 0.86743 0.85013 0.73907 0.90971 0.87906 0.91219 0.93823 0.88967 0.93914 0.89079 0.91063 0.87993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.10 13.64 55.57 0.76 -19.34 16 2 C 0.03 0.84 5.50 -17.28 -0.09 0.74 16 3 Si 1.07 22.36 24.84 -169.99 -4.22 18.13 16 4 H -0.27 -5.31 6.81 56.52 0.39 -4.92 16 5 H -0.26 -5.27 6.37 56.52 0.36 -4.91 16 6 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 7 C -0.42 -11.44 8.97 -37.94 -0.34 -11.78 16 8 H 0.11 3.40 6.15 -52.49 -0.32 3.07 16 9 C 0.11 2.92 5.32 -106.21 -0.56 2.36 16 10 C -0.16 -3.50 7.35 -39.12 -0.29 -3.79 16 11 C -0.20 -3.90 11.07 28.86 0.32 -3.58 16 12 S -0.01 -0.29 15.98 -107.50 -1.72 -2.01 16 13 C -0.44 -10.61 6.27 -35.88 -0.23 -10.84 16 14 C 0.61 14.46 6.60 -13.04 -0.09 14.38 16 15 O -0.54 -14.29 10.60 5.14 0.05 -14.23 16 16 N -0.61 -11.43 2.06 -168.95 -0.35 -11.77 16 17 C 0.11 1.75 5.62 -5.20 -0.03 1.72 16 18 C 0.46 7.44 5.41 36.01 0.19 7.63 16 19 O -0.50 -9.98 16.89 -18.74 -0.32 -10.29 16 20 O -0.52 -6.43 13.33 -39.27 -0.52 -6.95 16 21 C 0.17 2.66 2.65 -67.75 -0.18 2.48 16 22 C -0.17 -2.75 5.38 -26.59 -0.14 -2.89 16 23 C 0.07 0.93 6.84 37.21 0.25 1.18 16 24 O -0.38 -6.06 10.76 -35.23 -0.38 -6.44 16 25 C 0.07 0.97 6.84 37.20 0.25 1.22 16 26 C -0.17 -2.97 5.39 -26.59 -0.14 -3.11 16 27 H 0.30 7.61 8.73 -40.82 -0.36 7.25 16 28 H 0.12 2.56 4.36 -52.49 -0.23 2.33 16 29 H 0.14 2.28 8.06 -52.48 -0.42 1.86 16 30 H 0.11 1.27 7.72 -51.92 -0.40 0.87 16 31 H 0.13 2.13 4.75 -23.53 -0.11 2.02 16 32 H 0.40 3.48 9.10 45.56 0.41 3.90 16 33 H 0.07 0.94 7.67 -51.93 -0.40 0.54 16 34 H 0.10 2.07 6.12 -51.93 -0.32 1.76 16 35 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 40 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 41 H 0.10 2.19 6.04 -51.93 -0.31 1.88 16 LS Contribution 335.15 15.07 5.05 5.05 Total: -1.00 -32.29 335.15 -6.56 -38.85 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: -3.85 Total: 13.27 kcal Atomic # 6 Polarization: -3.20 SS G_CDS: -1.07 Total: -4.27 kcal Atomic # 7 Polarization: -31.52 SS G_CDS: 0.41 Total: -31.11 kcal Atomic # 8 Polarization: -36.75 SS G_CDS: -1.17 Total: -37.91 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -4.22 Total: 18.13 kcal Atomic # 16 Polarization: -0.29 SS G_CDS: -1.72 Total: -2.01 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.29 -6.56 -38.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601078989.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.345 kcal (2) G-P(sol) polarization free energy of solvation -32.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds