Wall clock time and date at job start Tue Mar 31 2020 22:24:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30642 * 1 3 3 Si 1.86798 * 120.00269 * 2 1 4 4 H 1.48498 * 109.46999 * 83.32843 * 3 2 1 5 5 H 1.48501 * 109.47169 * 203.33114 * 3 2 1 6 6 H 1.48502 * 109.46997 * 323.33045 * 3 2 1 7 7 C 1.40309 * 119.99906 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99957 * 15.49449 * 7 2 1 9 9 C 1.40537 * 120.00186 * 195.49270 * 7 2 1 10 10 C 1.44190 * 123.71440 * 23.83265 * 9 7 2 11 11 C 1.32761 * 114.42926 * 180.02562 * 10 9 7 12 12 S 1.75467 * 111.36758 * 359.97438 * 11 10 9 13 13 C 1.39548 * 123.71721 * 203.53578 * 9 7 2 14 14 C 1.46246 * 125.22487 * 359.97438 * 13 9 7 15 15 O 1.21759 * 119.99819 * 352.61453 * 14 13 9 16 16 N 1.34777 * 119.99625 * 172.60715 * 14 13 9 17 17 C 1.46496 * 119.99917 * 1.61185 * 16 14 13 18 18 C 1.50699 * 109.47250 * 79.63384 * 17 16 14 19 19 O 1.20818 * 119.99980 * 0.02562 * 18 17 16 20 20 O 1.34236 * 119.99821 * 179.97438 * 18 17 16 21 21 C 1.46503 * 119.99658 * 181.60785 * 16 14 13 22 22 C 1.53175 * 109.54197 * 59.55910 * 21 16 14 23 23 C 1.53093 * 109.16029 * 183.14986 * 22 21 16 24 24 O 1.42899 * 109.41315 * 57.61077 * 23 22 21 25 25 C 1.42902 * 114.10028 * 298.83662 * 24 23 22 26 26 C 1.53090 * 109.41018 * 61.15990 * 25 24 23 27 27 H 0.96999 * 119.99860 * 174.72758 * 1 2 3 28 28 H 1.07999 * 122.78197 * 359.97438 * 10 9 7 29 29 H 1.08006 * 124.31601 * 179.97438 * 11 10 9 30 30 H 1.09008 * 109.47032 * 199.63138 * 17 16 14 31 31 H 1.08997 * 109.47706 * 319.63063 * 17 16 14 32 32 H 0.96701 * 116.99783 * 179.97438 * 20 18 17 33 33 H 1.09003 * 109.53818 * 179.82596 * 21 16 14 34 34 H 1.09003 * 109.52165 * 303.05454 * 22 21 16 35 35 H 1.09002 * 109.52119 * 63.24376 * 22 21 16 36 36 H 1.08995 * 109.48503 * 297.62593 * 23 22 21 37 37 H 1.09002 * 109.47879 * 177.58998 * 23 22 21 38 38 H 1.09007 * 109.48129 * 301.18174 * 25 24 23 39 39 H 1.08999 * 109.49041 * 181.15091 * 25 24 23 40 40 H 1.09002 * 109.52518 * 182.48975 * 26 25 24 41 41 H 1.09004 * 109.52525 * 62.30122 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 2.3471 2.1277 1.3906 5 1 3.6013 1.4035 -0.5545 6 1 1.5155 2.6079 -0.8361 7 6 2.0079 -1.2151 -0.0005 8 1 1.4974 -2.1333 -0.2508 9 6 3.3750 -1.2374 0.3245 10 6 4.0242 -0.2280 1.1237 11 6 5.3219 -0.4311 1.3167 12 16 5.8642 -1.8993 0.5234 13 6 4.2524 -2.2421 -0.0855 14 6 3.8869 -3.4008 -0.8995 15 8 2.7174 -3.6168 -1.1605 16 7 4.8446 -4.2294 -1.3607 17 6 6.2484 -3.9894 -1.0173 18 6 6.5193 -4.4994 0.3746 19 8 5.6311 -5.0113 1.0140 20 8 7.7478 -4.3859 0.9037 21 6 4.4816 -5.3701 -2.2053 22 6 3.7765 -4.8681 -3.4690 23 6 3.3315 -6.0696 -4.3070 24 8 2.4761 -6.9043 -3.5237 25 6 3.0966 -7.4412 -2.3537 26 6 3.5322 -6.2948 -1.4373 27 1 -0.4850 -0.8365 -0.0772 28 1 3.4985 0.6231 1.5307 29 1 5.9622 0.2239 1.8890 30 1 6.8904 -4.5115 -1.7269 31 1 6.4550 -2.9201 -1.0591 32 1 7.8731 -4.7272 1.7997 33 1 5.3814 -5.9197 -2.4820 34 1 2.9050 -4.2763 -3.1891 35 1 4.4641 -4.2534 -4.0500 36 1 4.2068 -6.6384 -4.6205 37 1 2.7913 -5.7192 -5.1866 38 1 3.9690 -8.0280 -2.6416 39 1 2.3875 -8.0790 -1.8261 40 1 4.0452 -6.7004 -0.5652 41 1 2.6558 -5.7318 -1.1163 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601078989.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:45 Heat of formation + Delta-G solvation = -160.116175 kcal Electronic energy + Delta-G solvation = -28781.215060 eV Core-core repulsion = 24751.989141 eV Total energy + Delta-G solvation = -4029.225919 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.74284 -40.68242 -39.49565 -38.15007 -37.03288 -36.28120 -35.27513 -33.78603 -32.08000 -30.82945 -29.27499 -28.36710 -25.58338 -24.54763 -23.61273 -23.24783 -22.11418 -21.24743 -20.71743 -19.10119 -18.73773 -18.53057 -17.68278 -17.38815 -17.00328 -16.97307 -16.68025 -16.39890 -16.08004 -15.57541 -15.42705 -15.20302 -15.05698 -14.84738 -14.41017 -14.11572 -14.00990 -13.86377 -13.56859 -13.38671 -13.26355 -12.87585 -12.72172 -12.45340 -12.41049 -12.20954 -12.05911 -11.90915 -11.67894 -11.57014 -11.34014 -11.21451 -11.08849 -10.71287 -10.14651 -9.82612 -9.67833 -9.41320 -9.08639 -6.63600 0.08074 1.00273 1.24284 1.40103 1.45968 1.51997 1.65668 1.73426 1.83585 2.09821 2.26094 2.59185 2.95997 3.13496 3.60290 3.80949 3.90661 4.01250 4.10071 4.14814 4.23895 4.27514 4.34474 4.36690 4.46228 4.50529 4.60277 4.71012 4.72763 4.86081 5.05734 5.13891 5.19499 5.25627 5.27783 5.32316 5.53319 5.71993 5.77494 6.13440 6.21732 6.25649 6.51966 6.73478 7.10236 7.61650 7.72522 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.011154 B = 0.005611 C = 0.004079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2509.747960 B = 4988.637404 C = 6863.319561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.003 3.997 3 Si 1.104 2.896 4 H -0.242 1.242 5 H -0.247 1.247 6 H -0.275 1.275 7 C -0.473 4.473 8 H 0.059 0.941 9 C 0.100 3.900 10 C -0.193 4.193 11 C -0.181 4.181 12 S 0.067 5.933 13 C -0.467 4.467 14 C 0.601 3.399 15 O -0.582 6.582 16 N -0.608 5.608 17 C 0.102 3.898 18 C 0.467 3.533 19 O -0.544 6.544 20 O -0.501 6.501 21 C 0.158 3.842 22 C -0.170 4.170 23 C 0.070 3.930 24 O -0.408 6.408 25 C 0.073 3.927 26 C -0.168 4.168 27 H 0.280 0.720 28 H 0.135 0.865 29 H 0.192 0.808 30 H 0.173 0.827 31 H 0.130 0.870 32 H 0.423 0.577 33 H 0.125 0.875 34 H 0.044 0.956 35 H 0.090 0.910 36 H 0.086 0.914 37 H 0.101 0.899 38 H 0.084 0.916 39 H 0.094 0.906 40 H 0.066 0.934 41 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.358 -6.537 -4.084 19.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.430 5.430 2 C -0.214 4.214 3 Si 0.921 3.079 4 H -0.167 1.167 5 H -0.171 1.171 6 H -0.202 1.202 7 C -0.504 4.504 8 H 0.077 0.923 9 C 0.089 3.911 10 C -0.224 4.224 11 C -0.314 4.314 12 S 0.328 5.672 13 C -0.585 4.585 14 C 0.399 3.601 15 O -0.466 6.466 16 N -0.340 5.340 17 C -0.025 4.025 18 C 0.307 3.693 19 O -0.434 6.434 20 O -0.314 6.314 21 C 0.056 3.944 22 C -0.209 4.209 23 C -0.007 4.007 24 O -0.328 6.328 25 C -0.004 4.004 26 C -0.207 4.207 27 H 0.090 0.910 28 H 0.152 0.848 29 H 0.209 0.791 30 H 0.191 0.809 31 H 0.146 0.854 32 H 0.284 0.716 33 H 0.143 0.857 34 H 0.063 0.937 35 H 0.108 0.892 36 H 0.105 0.895 37 H 0.119 0.881 38 H 0.102 0.898 39 H 0.112 0.888 40 H 0.084 0.916 41 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 18.308 -5.779 -4.512 19.722 hybrid contribution -2.041 -1.268 1.291 2.727 sum 16.267 -7.047 -3.222 18.018 Atomic orbital electron populations 1.70499 1.08805 1.32946 1.30735 1.29008 0.95860 1.07521 0.89041 0.83406 0.75419 0.69160 0.79870 1.16675 1.17146 1.20196 1.20844 0.94899 0.96664 1.38035 0.92282 1.18287 0.92719 0.90801 0.89290 1.21374 0.95809 1.01397 1.03868 1.26049 0.98420 1.03222 1.03753 1.82524 1.09048 1.21562 1.54088 1.23168 0.97300 1.10205 1.27838 1.16998 0.84200 0.81121 0.77805 1.90639 1.20016 1.74668 1.61323 1.47468 1.05461 1.28850 1.52241 1.21550 0.84322 1.04877 0.91725 1.23981 0.80150 0.74733 0.90472 1.90751 1.46877 1.43017 1.62749 1.84446 1.31643 1.77269 1.37995 1.21169 0.98503 0.85529 0.89194 1.22605 1.01527 1.00054 0.96688 1.22673 0.95351 0.89700 0.92971 1.87897 1.41219 1.66106 1.37548 1.22592 0.99002 0.93633 0.85165 1.22544 1.00465 0.98161 0.99556 0.90956 0.84824 0.79138 0.80935 0.85362 0.71552 0.85718 0.93698 0.89169 0.89546 0.88121 0.89772 0.88790 0.91576 0.93911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -45.57 13.64 21.89 0.30 -45.27 16 2 C 0.00 0.16 5.50 85.37 0.47 0.63 16 3 Si 1.10 45.74 24.84 68.60 1.70 47.44 16 4 H -0.24 -8.75 6.81 99.48 0.68 -8.07 16 5 H -0.25 -9.81 6.37 99.48 0.63 -9.17 16 6 H -0.28 -10.97 7.11 99.48 0.71 -10.27 16 7 C -0.47 -28.12 8.97 23.33 0.21 -27.91 16 8 H 0.06 4.04 6.15 -2.91 -0.02 4.02 16 9 C 0.10 5.30 5.32 -20.89 -0.11 5.19 16 10 C -0.19 -8.42 7.35 22.61 0.17 -8.25 16 11 C -0.18 -6.49 11.07 66.64 0.74 -5.76 16 12 S 0.07 2.42 15.98 -56.49 -0.90 1.52 16 13 C -0.47 -22.97 6.27 24.67 0.15 -22.82 16 14 C 0.60 29.61 6.60 86.32 0.57 30.18 16 15 O -0.58 -33.87 10.60 -4.54 -0.05 -33.92 16 16 N -0.61 -22.07 2.06 -806.62 -1.66 -23.73 16 17 C 0.10 2.75 5.62 85.63 0.48 3.23 16 18 C 0.47 13.40 5.41 71.24 0.39 13.78 16 19 O -0.54 -20.99 16.89 21.99 0.37 -20.61 16 20 O -0.50 -9.87 13.33 -51.48 -0.69 -10.56 16 21 C 0.16 4.84 2.65 45.11 0.12 4.96 16 22 C -0.17 -5.29 5.38 30.68 0.17 -5.13 16 23 C 0.07 1.73 6.84 72.01 0.49 2.22 16 24 O -0.41 -12.71 10.76 -148.98 -1.60 -14.31 16 25 C 0.07 1.98 6.84 72.01 0.49 2.47 16 26 C -0.17 -5.88 5.39 30.68 0.17 -5.71 16 27 H 0.28 16.18 8.73 -92.71 -0.81 15.37 16 28 H 0.13 5.42 4.36 -2.91 -0.01 5.41 16 29 H 0.19 4.93 8.06 -2.91 -0.02 4.91 16 30 H 0.17 2.67 7.72 -2.38 -0.02 2.66 16 31 H 0.13 3.61 4.75 -20.45 -0.10 3.51 16 32 H 0.42 5.28 9.10 -74.06 -0.67 4.61 16 33 H 0.13 2.55 7.67 -2.39 -0.02 2.53 16 34 H 0.04 1.94 6.12 -2.39 -0.01 1.93 16 35 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 36 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 38 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16 39 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 40 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 41 H 0.04 2.01 6.04 -2.38 -0.01 1.99 16 Total: -1.00 -82.73 335.15 2.17 -80.56 By element: Atomic # 1 Polarization: 31.60 SS G_CDS: 0.20 Total: 31.80 kcal Atomic # 6 Polarization: -17.42 SS G_CDS: 4.50 Total: -12.92 kcal Atomic # 7 Polarization: -67.64 SS G_CDS: -1.36 Total: -69.00 kcal Atomic # 8 Polarization: -77.44 SS G_CDS: -1.97 Total: -79.40 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 1.70 Total: 47.44 kcal Atomic # 16 Polarization: 2.42 SS G_CDS: -0.90 Total: 1.52 kcal Total: -82.73 2.17 -80.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601078989.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.558 kcal (2) G-P(sol) polarization free energy of solvation -82.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds