Wall clock time and date at job start Tue Mar 31 2020 22:24:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30641 * 1 3 3 Si 1.86799 * 120.00156 * 2 1 4 4 H 1.48493 * 109.47220 * 240.00327 * 3 2 1 5 5 H 1.48497 * 109.47073 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46907 * 120.00122 * 3 2 1 7 7 C 1.40302 * 119.99658 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00139 * 188.96721 * 7 2 1 9 9 C 1.40539 * 120.00218 * 8.96189 * 7 2 1 10 10 C 1.44186 * 123.71448 * 24.37360 * 9 7 2 11 11 C 1.32772 * 114.43031 * 180.26866 * 10 9 7 12 12 S 1.75473 * 111.36040 * 359.97438 * 11 10 9 13 13 C 1.39549 * 123.71176 * 204.66669 * 9 7 2 14 14 C 1.46234 * 125.23329 * 359.71532 * 13 9 7 15 15 O 1.21760 * 119.99952 * 359.97438 * 14 13 9 16 16 N 1.34778 * 120.00199 * 180.02562 * 14 13 9 17 17 C 1.46500 * 119.99859 * 184.88589 * 16 14 13 18 18 C 1.52992 * 109.54334 * 297.93790 * 17 16 14 19 19 C 1.50700 * 109.47535 * 305.46952 * 18 17 16 20 20 O 1.20825 * 119.99591 * 5.59051 * 19 18 17 21 21 O 1.34225 * 120.00354 * 185.59056 * 19 18 17 22 22 C 1.53179 * 109.54241 * 177.76263 * 17 16 14 23 23 C 1.53281 * 109.06425 * 297.03059 * 22 17 16 24 24 O 1.42909 * 109.46048 * 302.44375 * 23 22 17 25 25 C 1.42900 * 114.09472 * 61.15887 * 24 23 22 26 26 C 1.53092 * 109.41527 * 298.84110 * 25 24 23 27 27 H 0.97005 * 119.99637 * 359.97438 * 1 2 3 28 28 H 1.07997 * 122.78324 * 0.23915 * 10 9 7 29 29 H 1.07994 * 124.31429 * 180.02562 * 11 10 9 30 30 H 0.96998 * 120.00047 * 4.88313 * 16 14 13 31 31 H 1.09003 * 109.47310 * 65.46901 * 18 17 16 32 32 H 1.09004 * 109.47277 * 185.46753 * 18 17 16 33 33 H 0.96699 * 117.00295 * 179.97438 * 21 19 18 34 34 H 1.08994 * 109.52373 * 57.01630 * 22 17 16 35 35 H 1.08998 * 109.52668 * 177.20838 * 22 17 16 36 36 H 1.09001 * 109.45984 * 182.44986 * 23 22 17 37 37 H 1.09003 * 109.46966 * 62.44428 * 23 22 17 38 38 H 1.09007 * 109.48181 * 178.86052 * 25 24 23 39 39 H 1.09001 * 109.49319 * 58.83152 * 25 24 23 40 40 H 1.08998 * 109.52546 * 297.70023 * 26 25 24 41 41 H 1.09003 * 109.57558 * 177.54946 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 3.0941 1.6964 -1.2125 5 1 1.2755 2.7464 0.0006 6 1 3.0942 1.6963 1.2125 7 6 2.0078 -1.2151 -0.0005 8 1 3.0780 -1.2210 0.1452 9 6 1.3180 -2.4247 -0.1907 10 6 0.0516 -2.5251 -0.8727 11 6 -0.4383 -3.7571 -0.9426 12 16 0.6288 -4.9142 -0.1669 13 6 1.7804 -3.6599 0.2650 14 6 3.0318 -3.8771 0.9898 15 8 3.7625 -2.9355 1.2388 16 7 3.3768 -5.1198 1.3814 17 6 4.5750 -5.3238 2.1994 18 6 5.8104 -4.8695 1.4197 19 6 5.8534 -5.5769 0.0898 20 8 4.9350 -6.2859 -0.2473 21 8 6.9120 -5.4194 -0.7203 22 6 4.7085 -6.8086 2.5512 23 6 3.5038 -7.2327 3.3987 24 8 3.4350 -6.4169 4.5701 25 6 3.2634 -5.0239 4.3017 26 6 4.4573 -4.5108 3.4923 27 1 -0.4850 0.8401 0.0004 28 1 -0.4565 -1.6691 -1.2915 29 1 -1.3737 -4.0143 -1.4171 30 1 2.8319 -5.8790 1.1217 31 1 5.7618 -3.7927 1.2570 32 1 6.7082 -5.1107 1.9888 33 1 6.8945 -5.8936 -1.5629 34 1 4.7379 -7.3987 1.6353 35 1 5.6260 -6.9677 3.1177 36 1 3.6139 -8.2774 3.6893 37 1 2.5898 -7.1115 2.8172 38 1 3.2005 -4.4774 5.2428 39 1 2.3464 -4.8735 3.7320 40 1 5.3698 -4.6234 4.0777 41 1 4.3084 -3.4588 3.2488 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601079119.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:29 Heat of formation + Delta-G solvation = -152.516480 kcal Electronic energy + Delta-G solvation = -28683.889856 eV Core-core repulsion = 24654.993484 eV Total energy + Delta-G solvation = -4028.896371 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.74893 -39.29027 -37.76202 -36.23353 -35.82043 -34.61813 -33.06143 -31.41445 -30.96040 -29.24062 -28.87831 -26.16488 -23.97521 -23.57091 -22.33088 -21.12484 -20.59477 -18.79566 -18.70378 -17.83640 -17.69755 -16.40369 -15.97811 -15.87344 -15.76491 -15.51984 -15.35509 -14.78521 -14.62993 -14.28316 -13.79323 -13.67766 -13.08682 -12.69177 -12.55111 -12.47387 -12.36762 -12.23744 -11.99192 -11.82808 -11.69379 -11.43397 -11.33923 -11.12503 -11.10548 -10.95618 -10.61929 -10.46767 -10.32969 -10.12818 -10.04804 -9.62200 -9.40851 -9.24339 -8.35644 -8.21129 -7.48882 -7.12589 -7.04580 -4.53603 2.15354 2.49566 2.96861 2.98039 3.01828 3.13750 3.24265 3.64300 3.78944 3.84397 3.99741 4.09460 4.35990 4.73042 4.81405 5.04016 5.14589 5.26462 5.33843 5.45213 5.51545 5.58881 5.74607 5.83185 5.86090 5.97034 6.04774 6.13910 6.16866 6.23659 6.44851 6.64543 6.73190 6.83655 7.16142 7.20261 7.32527 7.36827 7.47849 7.70403 8.13075 8.34158 8.46386 8.59883 8.77528 9.55955 9.86458 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.011368 B = 0.004619 C = 0.004386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2462.520582 B = 6060.514316 C = 6382.314002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.779 5.779 2 C 0.068 3.932 3 Si 0.925 3.075 4 H -0.260 1.260 5 H -0.277 1.277 6 H -0.259 1.259 7 C -0.378 4.378 8 H 0.110 0.890 9 C 0.142 3.858 10 C -0.101 4.101 11 C -0.207 4.207 12 S -0.047 6.047 13 C -0.426 4.426 14 C 0.605 3.395 15 O -0.567 6.567 16 N -0.729 5.729 17 C 0.201 3.799 18 C -0.127 4.127 19 C 0.482 3.518 20 O -0.503 6.503 21 O -0.524 6.524 22 C -0.163 4.163 23 C 0.064 3.936 24 O -0.387 6.387 25 C 0.065 3.935 26 C -0.164 4.164 27 H 0.288 0.712 28 H 0.144 0.856 29 H 0.136 0.864 30 H 0.395 0.605 31 H 0.132 0.868 32 H 0.100 0.900 33 H 0.404 0.596 34 H 0.088 0.912 35 H 0.079 0.921 36 H 0.091 0.909 37 H 0.053 0.947 38 H 0.091 0.909 39 H 0.058 0.942 40 H 0.072 0.928 41 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.098 -7.748 2.637 10.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.404 5.404 2 C -0.154 4.154 3 Si 0.748 3.252 4 H -0.185 1.185 5 H -0.202 1.202 6 H -0.183 1.183 7 C -0.409 4.409 8 H 0.128 0.872 9 C 0.130 3.870 10 C -0.133 4.133 11 C -0.341 4.341 12 S 0.208 5.792 13 C -0.545 4.545 14 C 0.403 3.597 15 O -0.452 6.452 16 N -0.382 5.382 17 C 0.113 3.887 18 C -0.165 4.165 19 C 0.324 3.676 20 O -0.390 6.390 21 O -0.336 6.336 22 C -0.201 4.201 23 C -0.013 4.013 24 O -0.306 6.306 25 C -0.011 4.011 26 C -0.203 4.203 27 H 0.099 0.901 28 H 0.161 0.839 29 H 0.154 0.846 30 H 0.230 0.770 31 H 0.150 0.850 32 H 0.118 0.882 33 H 0.262 0.738 34 H 0.107 0.893 35 H 0.097 0.903 36 H 0.109 0.891 37 H 0.071 0.929 38 H 0.109 0.891 39 H 0.077 0.923 40 H 0.090 0.910 41 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 7.082 -8.542 3.524 11.642 hybrid contribution -0.129 1.614 -1.365 2.118 sum 6.953 -6.927 2.159 10.050 Atomic orbital electron populations 1.69668 1.08043 1.30389 1.32282 1.26356 0.94932 1.02481 0.91634 0.86065 0.79947 0.78513 0.80657 1.18459 1.20165 1.18275 1.19945 0.97466 0.88705 1.34760 0.87216 1.17925 0.89541 0.91819 0.87686 1.21710 0.96438 0.95921 0.99230 1.24964 1.03368 0.97160 1.08582 1.82816 1.17812 1.14259 1.64339 1.22634 1.05181 0.95766 1.30940 1.16786 0.84401 0.81129 0.77405 1.90564 1.53399 1.41721 1.59502 1.45850 1.27265 1.09277 1.55807 1.19785 0.84860 0.94167 0.89846 1.21952 1.00169 1.04416 0.89986 1.23445 0.78728 0.78856 0.86553 1.90674 1.36422 1.37165 1.74705 1.84545 1.45677 1.70034 1.33308 1.22619 1.00223 0.95713 1.01583 1.22523 0.96965 0.94720 0.87077 1.87868 1.93993 1.18110 1.30581 1.22531 0.97566 0.81110 0.99933 1.22581 0.99478 1.03217 0.94993 0.90093 0.83860 0.84593 0.77042 0.85016 0.88171 0.73789 0.89307 0.90251 0.89080 0.92869 0.89075 0.92344 0.90966 0.87707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.65 10.83 55.57 0.60 -18.05 16 2 C 0.07 1.62 5.40 -17.28 -0.09 1.52 16 3 Si 0.92 18.24 29.57 -169.99 -5.03 13.21 16 4 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 5 H -0.28 -5.19 7.11 56.52 0.40 -4.79 16 6 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 7 C -0.38 -9.91 8.49 -37.94 -0.32 -10.24 16 8 H 0.11 2.98 6.08 -52.48 -0.32 2.66 16 9 C 0.14 3.71 5.67 -106.21 -0.60 3.11 16 10 C -0.10 -2.44 9.03 -39.12 -0.35 -2.79 16 11 C -0.21 -4.53 11.07 28.86 0.32 -4.21 16 12 S -0.05 -1.03 22.26 -107.50 -2.39 -3.42 16 13 C -0.43 -10.58 6.51 -35.88 -0.23 -10.81 16 14 C 0.61 13.88 7.16 -13.05 -0.09 13.79 16 15 O -0.57 -13.83 10.76 5.14 0.06 -13.77 16 16 N -0.73 -13.61 2.54 -48.86 -0.12 -13.74 16 17 C 0.20 3.09 0.25 -131.64 -0.03 3.06 16 18 C -0.13 -1.87 4.60 -27.89 -0.13 -2.00 16 19 C 0.48 7.43 7.84 36.01 0.28 7.71 16 20 O -0.50 -8.83 13.84 -18.75 -0.26 -9.09 16 21 O -0.52 -6.69 13.42 -39.25 -0.53 -7.22 16 22 C -0.16 -2.11 4.69 -26.49 -0.12 -2.24 16 23 C 0.06 0.84 6.67 37.30 0.25 1.09 16 24 O -0.39 -5.73 10.77 -35.23 -0.38 -6.11 16 25 C 0.07 0.99 6.68 37.21 0.25 1.24 16 26 C -0.16 -2.49 4.73 -26.59 -0.13 -2.62 16 27 H 0.29 6.21 8.29 -40.82 -0.34 5.87 16 28 H 0.14 3.46 6.43 -52.49 -0.34 3.12 16 29 H 0.14 2.54 8.06 -52.49 -0.42 2.12 16 30 H 0.39 7.41 6.54 -40.82 -0.27 7.15 16 31 H 0.13 2.27 6.33 -51.93 -0.33 1.94 16 32 H 0.10 1.15 8.14 -51.93 -0.42 0.72 16 33 H 0.40 3.48 9.10 45.56 0.41 3.90 16 34 H 0.09 1.19 6.30 -51.93 -0.33 0.87 16 35 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.05 0.75 7.14 -51.93 -0.37 0.38 16 38 H 0.09 1.24 8.14 -51.92 -0.42 0.82 16 39 H 0.06 1.02 7.75 -51.93 -0.40 0.61 16 40 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.10 1.88 6.14 -51.93 -0.32 1.56 16 LS Contribution 342.97 15.07 5.17 5.17 Total: -1.00 -29.59 342.97 -7.82 -37.41 By element: Atomic # 1 Polarization: 22.92 SS G_CDS: -3.93 Total: 19.00 kcal Atomic # 6 Polarization: -2.38 SS G_CDS: -1.01 Total: -3.39 kcal Atomic # 7 Polarization: -32.26 SS G_CDS: 0.48 Total: -31.78 kcal Atomic # 8 Polarization: -35.08 SS G_CDS: -1.11 Total: -36.19 kcal Atomic # 14 Polarization: 18.24 SS G_CDS: -5.03 Total: 13.21 kcal Atomic # 16 Polarization: -1.03 SS G_CDS: -2.39 Total: -3.42 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -29.59 -7.82 -37.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601079119.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.109 kcal (2) G-P(sol) polarization free energy of solvation -29.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds