Wall clock time and date at job start Tue Mar 31 2020 22:24:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30641 * 1 3 3 Si 1.86799 * 120.00156 * 2 1 4 4 H 1.48493 * 109.47220 * 240.00327 * 3 2 1 5 5 H 1.48497 * 109.47073 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46907 * 120.00122 * 3 2 1 7 7 C 1.40302 * 119.99658 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00139 * 188.96721 * 7 2 1 9 9 C 1.40539 * 120.00218 * 8.96189 * 7 2 1 10 10 C 1.44186 * 123.71448 * 24.37360 * 9 7 2 11 11 C 1.32772 * 114.43031 * 180.26866 * 10 9 7 12 12 S 1.75473 * 111.36040 * 359.97438 * 11 10 9 13 13 C 1.39549 * 123.71176 * 204.66669 * 9 7 2 14 14 C 1.46234 * 125.23329 * 359.71532 * 13 9 7 15 15 O 1.21760 * 119.99952 * 359.97438 * 14 13 9 16 16 N 1.34778 * 120.00199 * 180.02562 * 14 13 9 17 17 C 1.46500 * 119.99859 * 184.88589 * 16 14 13 18 18 C 1.52992 * 109.54334 * 297.93790 * 17 16 14 19 19 C 1.50700 * 109.47535 * 305.46952 * 18 17 16 20 20 O 1.20825 * 119.99591 * 5.59051 * 19 18 17 21 21 O 1.34225 * 120.00354 * 185.59056 * 19 18 17 22 22 C 1.53179 * 109.54241 * 177.76263 * 17 16 14 23 23 C 1.53281 * 109.06425 * 297.03059 * 22 17 16 24 24 O 1.42909 * 109.46048 * 302.44375 * 23 22 17 25 25 C 1.42900 * 114.09472 * 61.15887 * 24 23 22 26 26 C 1.53092 * 109.41527 * 298.84110 * 25 24 23 27 27 H 0.97005 * 119.99637 * 359.97438 * 1 2 3 28 28 H 1.07997 * 122.78324 * 0.23915 * 10 9 7 29 29 H 1.07994 * 124.31429 * 180.02562 * 11 10 9 30 30 H 0.96998 * 120.00047 * 4.88313 * 16 14 13 31 31 H 1.09003 * 109.47310 * 65.46901 * 18 17 16 32 32 H 1.09004 * 109.47277 * 185.46753 * 18 17 16 33 33 H 0.96699 * 117.00295 * 179.97438 * 21 19 18 34 34 H 1.08994 * 109.52373 * 57.01630 * 22 17 16 35 35 H 1.08998 * 109.52668 * 177.20838 * 22 17 16 36 36 H 1.09001 * 109.45984 * 182.44986 * 23 22 17 37 37 H 1.09003 * 109.46966 * 62.44428 * 23 22 17 38 38 H 1.09007 * 109.48181 * 178.86052 * 25 24 23 39 39 H 1.09001 * 109.49319 * 58.83152 * 25 24 23 40 40 H 1.08998 * 109.52546 * 297.70023 * 26 25 24 41 41 H 1.09003 * 109.57558 * 177.54946 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 3.0941 1.6964 -1.2125 5 1 1.2755 2.7464 0.0006 6 1 3.0942 1.6963 1.2125 7 6 2.0078 -1.2151 -0.0005 8 1 3.0780 -1.2210 0.1452 9 6 1.3180 -2.4247 -0.1907 10 6 0.0516 -2.5251 -0.8727 11 6 -0.4383 -3.7571 -0.9426 12 16 0.6288 -4.9142 -0.1669 13 6 1.7804 -3.6599 0.2650 14 6 3.0318 -3.8771 0.9898 15 8 3.7625 -2.9355 1.2388 16 7 3.3768 -5.1198 1.3814 17 6 4.5750 -5.3238 2.1994 18 6 5.8104 -4.8695 1.4197 19 6 5.8534 -5.5769 0.0898 20 8 4.9350 -6.2859 -0.2473 21 8 6.9120 -5.4194 -0.7203 22 6 4.7085 -6.8086 2.5512 23 6 3.5038 -7.2327 3.3987 24 8 3.4350 -6.4169 4.5701 25 6 3.2634 -5.0239 4.3017 26 6 4.4573 -4.5108 3.4923 27 1 -0.4850 0.8401 0.0004 28 1 -0.4565 -1.6691 -1.2915 29 1 -1.3737 -4.0143 -1.4171 30 1 2.8319 -5.8790 1.1217 31 1 5.7618 -3.7927 1.2570 32 1 6.7082 -5.1107 1.9888 33 1 6.8945 -5.8936 -1.5629 34 1 4.7379 -7.3987 1.6353 35 1 5.6260 -6.9677 3.1177 36 1 3.6139 -8.2774 3.6893 37 1 2.5898 -7.1115 2.8172 38 1 3.2005 -4.4774 5.2428 39 1 2.3464 -4.8735 3.7320 40 1 5.3698 -4.6234 4.0777 41 1 4.3084 -3.4588 3.2488 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601079119.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:28 Heat of formation + Delta-G solvation = -172.028277 kcal Electronic energy + Delta-G solvation = -28684.735951 eV Core-core repulsion = 24654.993484 eV Total energy + Delta-G solvation = -4029.742466 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.02784 -40.52954 -39.31564 -37.85842 -37.12452 -36.01445 -34.88594 -32.94283 -32.09997 -30.69800 -30.40773 -27.97007 -25.23564 -24.72418 -24.04386 -22.29533 -22.20566 -20.60728 -20.13087 -19.37583 -19.00603 -17.73552 -17.49143 -17.18669 -17.03662 -16.97742 -16.78058 -16.10872 -16.01936 -15.79280 -15.44029 -15.16062 -14.38818 -14.20168 -14.07020 -13.88616 -13.73766 -13.69669 -13.38041 -13.28376 -13.17494 -12.96927 -12.80914 -12.69601 -12.50879 -12.24287 -12.07108 -12.03022 -11.80883 -11.51902 -11.37829 -11.25704 -11.04230 -10.61759 -10.10214 -9.77049 -9.32005 -8.93628 -8.83001 -6.42917 0.32769 1.28858 1.34147 1.36150 1.37105 1.46160 1.81393 1.99512 2.15548 2.17143 2.58588 2.60153 2.93232 3.33402 3.59455 3.62914 3.85991 4.02281 4.25984 4.32764 4.36703 4.40323 4.43213 4.59366 4.71041 4.77118 4.85963 4.89736 4.96851 5.02951 5.07263 5.08152 5.18235 5.29863 5.39446 5.58678 5.66426 5.83282 5.90251 6.21191 6.41629 6.61670 6.75100 7.01336 7.05842 7.82123 8.10607 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.011368 B = 0.004619 C = 0.004386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2462.520582 B = 6060.514316 C = 6382.314002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.035 3.965 3 Si 0.988 3.012 4 H -0.258 1.258 5 H -0.255 1.255 6 H -0.267 1.267 7 C -0.415 4.415 8 H 0.088 0.912 9 C 0.112 3.888 10 C -0.128 4.128 11 C -0.197 4.197 12 S -0.005 6.005 13 C -0.461 4.461 14 C 0.601 3.399 15 O -0.588 6.588 16 N -0.715 5.715 17 C 0.191 3.809 18 C -0.126 4.126 19 C 0.482 3.518 20 O -0.530 6.530 21 O -0.518 6.518 22 C -0.152 4.152 23 C 0.059 3.941 24 O -0.388 6.388 25 C 0.069 3.931 26 C -0.159 4.159 27 H 0.299 0.701 28 H 0.139 0.861 29 H 0.172 0.828 30 H 0.394 0.606 31 H 0.105 0.895 32 H 0.140 0.860 33 H 0.423 0.577 34 H 0.087 0.913 35 H 0.108 0.892 36 H 0.122 0.878 37 H 0.037 0.963 38 H 0.106 0.894 39 H 0.027 0.973 40 H 0.102 0.898 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.986 -8.924 3.148 12.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.184 4.184 3 Si 0.808 3.192 4 H -0.182 1.182 5 H -0.178 1.178 6 H -0.191 1.191 7 C -0.446 4.446 8 H 0.106 0.894 9 C 0.101 3.899 10 C -0.160 4.160 11 C -0.331 4.331 12 S 0.251 5.749 13 C -0.580 4.580 14 C 0.397 3.603 15 O -0.474 6.474 16 N -0.366 5.366 17 C 0.105 3.895 18 C -0.165 4.165 19 C 0.326 3.674 20 O -0.419 6.419 21 O -0.332 6.332 22 C -0.190 4.190 23 C -0.017 4.017 24 O -0.307 6.307 25 C -0.008 4.008 26 C -0.197 4.197 27 H 0.110 0.890 28 H 0.157 0.843 29 H 0.190 0.810 30 H 0.229 0.771 31 H 0.123 0.877 32 H 0.158 0.842 33 H 0.284 0.716 34 H 0.105 0.895 35 H 0.126 0.874 36 H 0.139 0.861 37 H 0.056 0.944 38 H 0.124 0.876 39 H 0.046 0.954 40 H 0.121 0.879 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 7.979 -9.763 4.025 13.235 hybrid contribution -0.383 1.820 -1.525 2.406 sum 7.595 -7.942 2.500 11.270 Atomic orbital electron populations 1.69664 1.08857 1.31786 1.32006 1.27034 0.95739 1.04815 0.90814 0.85144 0.78880 0.75045 0.80095 1.18239 1.17834 1.19118 1.19932 0.96750 0.90324 1.37574 0.89411 1.18354 0.90760 0.92536 0.88268 1.21639 0.96617 0.96854 1.00905 1.25414 1.04180 0.96409 1.07088 1.82504 1.16361 1.12639 1.63376 1.23216 1.06762 0.96857 1.31155 1.16786 0.83965 0.82194 0.77378 1.90548 1.53899 1.42782 1.60188 1.45700 1.28148 1.07586 1.55205 1.20127 0.83659 0.96270 0.89447 1.21929 1.01463 1.02576 0.90502 1.23532 0.78696 0.78301 0.86887 1.90664 1.37389 1.38530 1.75317 1.84497 1.44422 1.70035 1.34211 1.22572 1.01384 0.93224 1.01803 1.22706 0.96416 0.96000 0.86612 1.87872 1.93890 1.17620 1.31313 1.22442 0.96202 0.81922 1.00186 1.22506 1.00796 1.01124 0.95285 0.88986 0.84335 0.81035 0.77138 0.87710 0.84228 0.71623 0.89460 0.87405 0.86055 0.94422 0.87644 0.95414 0.87942 0.90940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -38.93 10.83 21.89 0.24 -38.70 16 2 C 0.04 1.74 5.40 85.37 0.46 2.20 16 3 Si 0.99 38.04 29.57 68.60 2.03 40.07 16 4 H -0.26 -9.75 7.11 99.48 0.71 -9.05 16 5 H -0.25 -8.81 7.11 99.48 0.71 -8.10 16 6 H -0.27 -10.50 7.11 99.48 0.71 -9.79 16 7 C -0.41 -22.86 8.49 23.33 0.20 -22.66 16 8 H 0.09 5.09 6.08 -2.91 -0.02 5.07 16 9 C 0.11 6.12 5.67 -20.89 -0.12 6.00 16 10 C -0.13 -6.33 9.03 22.60 0.20 -6.12 16 11 C -0.20 -8.51 11.07 66.64 0.74 -7.77 16 12 S 0.00 -0.21 22.26 -56.49 -1.26 -1.46 16 13 C -0.46 -23.60 6.51 24.67 0.16 -23.44 16 14 C 0.60 28.55 7.16 86.32 0.62 29.17 16 15 O -0.59 -30.13 10.76 -4.54 -0.05 -30.18 16 16 N -0.72 -26.98 2.54 -426.70 -1.08 -28.07 16 17 C 0.19 5.70 0.25 3.72 0.00 5.70 16 18 C -0.13 -3.58 4.60 29.85 0.14 -3.44 16 19 C 0.48 14.30 7.84 71.24 0.56 14.86 16 20 O -0.53 -18.16 13.84 21.97 0.30 -17.86 16 21 O -0.52 -12.38 13.42 -51.37 -0.69 -13.07 16 22 C -0.15 -3.54 4.69 30.75 0.14 -3.40 16 23 C 0.06 1.42 6.67 72.08 0.48 1.90 16 24 O -0.39 -10.72 10.77 -148.98 -1.60 -12.33 16 25 C 0.07 2.07 6.68 72.01 0.48 2.55 16 26 C -0.16 -4.70 4.73 30.68 0.15 -4.56 16 27 H 0.30 12.92 8.29 -92.70 -0.77 12.15 16 28 H 0.14 6.88 6.43 -2.91 -0.02 6.86 16 29 H 0.17 6.04 8.06 -2.91 -0.02 6.01 16 30 H 0.39 14.85 6.54 -92.71 -0.61 14.24 16 31 H 0.10 3.65 6.33 -2.39 -0.02 3.64 16 32 H 0.14 2.77 8.14 -2.39 -0.02 2.75 16 33 H 0.42 6.54 9.10 -74.06 -0.67 5.87 16 34 H 0.09 2.13 6.30 -2.39 -0.02 2.12 16 35 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.12 2.20 8.14 -2.39 -0.02 2.18 16 37 H 0.04 1.02 7.14 -2.39 -0.02 1.00 16 38 H 0.11 2.79 8.14 -2.38 -0.02 2.77 16 39 H 0.03 0.99 7.75 -2.39 -0.02 0.97 16 40 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 41 H 0.07 2.67 6.14 -2.39 -0.01 2.66 16 Total: -1.00 -66.85 342.97 1.93 -64.92 By element: Atomic # 1 Polarization: 45.83 SS G_CDS: -0.17 Total: 45.66 kcal Atomic # 6 Polarization: -13.21 SS G_CDS: 4.21 Total: -9.00 kcal Atomic # 7 Polarization: -65.92 SS G_CDS: -0.85 Total: -66.76 kcal Atomic # 8 Polarization: -71.39 SS G_CDS: -2.04 Total: -73.43 kcal Atomic # 14 Polarization: 38.04 SS G_CDS: 2.03 Total: 40.07 kcal Atomic # 16 Polarization: -0.21 SS G_CDS: -1.26 Total: -1.46 kcal Total: -66.85 1.93 -64.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601079119.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.104 kcal (2) G-P(sol) polarization free energy of solvation -66.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds