Wall clock time and date at job start Tue Mar 31 2020 22:56:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50700 * 119.99433 * 2 1 4 4 C 1.50697 * 120.00098 * 179.97438 * 2 1 3 5 5 C 1.53002 * 109.47211 * 95.00284 * 4 2 1 6 6 H 1.08996 * 109.47252 * 54.99688 * 5 4 2 7 7 N 1.46498 * 109.46788 * 294.99713 * 5 4 2 8 8 S 1.65600 * 119.99913 * 145.00140 * 7 5 4 9 9 O 1.42100 * 106.40399 * 178.54048 * 8 7 5 10 10 O 1.42101 * 106.40236 * 311.45789 * 8 7 5 11 11 C 1.76199 * 107.21707 * 64.99852 * 8 7 5 12 12 C 1.38637 * 119.74940 * 269.72471 * 11 8 7 13 13 C 1.37624 * 120.24707 * 179.72025 * 12 11 8 14 14 C 1.40711 * 119.74021 * 0.57629 * 13 12 11 15 15 C 1.41404 * 120.23847 * 179.67885 * 14 13 12 16 16 H 1.07998 * 119.99629 * 155.31005 * 15 14 13 17 17 C 1.39942 * 120.00222 * 335.30980 * 15 14 13 18 18 N 1.30823 * 120.00141 * 342.23770 * 17 15 14 19 19 Si 1.86799 * 119.99740 * 162.23087 * 17 15 14 20 20 H 1.48502 * 109.46819 * 94.67167 * 19 17 15 21 21 H 1.48504 * 109.46983 * 214.66635 * 19 17 15 22 22 H 1.48501 * 109.47498 * 334.66535 * 19 17 15 23 23 C 1.40712 * 119.51681 * 359.70204 * 14 13 12 24 24 C 1.37618 * 119.74545 * 0.02562 * 23 14 13 25 25 C 1.50699 * 109.47223 * 174.99908 * 5 4 2 26 26 O 1.20825 * 120.00190 * 119.99453 * 25 5 4 27 27 O 1.34228 * 119.99723 * 300.00084 * 25 5 4 28 28 H 1.07997 * 120.00679 * 0.02562 * 1 2 3 29 29 H 1.08006 * 119.99602 * 179.72676 * 1 2 3 30 30 H 1.09002 * 109.47074 * 90.00031 * 3 2 1 31 31 H 1.09004 * 109.46785 * 209.99766 * 3 2 1 32 32 H 1.08997 * 109.47007 * 329.99389 * 3 2 1 33 33 H 1.09005 * 109.46819 * 215.00033 * 4 2 1 34 34 H 1.08999 * 109.46992 * 335.00164 * 4 2 1 35 35 H 0.97006 * 120.00578 * 324.99844 * 7 5 4 36 36 H 1.08000 * 119.87600 * 359.97438 * 12 11 8 37 37 H 1.07999 * 120.12555 * 180.27860 * 13 12 11 38 38 H 0.96998 * 120.00140 * 179.97438 * 18 17 15 39 39 H 1.07999 * 120.12643 * 179.97438 * 23 14 13 40 40 H 1.08001 * 119.87741 * 180.02562 * 24 23 14 41 41 H 0.96706 * 116.99936 * 179.97438 * 27 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 2.0635 -1.3051 0.0006 5 6 2.4275 -1.6845 -1.4363 6 1 2.9771 -0.8655 -1.9002 7 7 1.2032 -1.9442 -2.1977 8 16 1.1219 -1.5338 -3.8000 9 8 -0.1621 -1.9397 -4.2536 10 8 1.5932 -0.1967 -3.8961 11 6 2.2916 -2.5364 -4.6551 12 6 3.5921 -2.0860 -4.8219 13 6 4.5155 -2.8632 -5.4831 14 6 4.1321 -4.1139 -6.0013 15 6 5.0705 -4.9181 -6.6885 16 1 4.9326 -5.9882 -6.7355 17 6 6.1778 -4.3273 -7.3075 18 7 6.1793 -3.0434 -7.5584 19 14 7.6540 -5.3721 -7.7753 20 1 7.5282 -5.8005 -9.1917 21 1 8.8967 -4.5766 -7.6073 22 1 7.7106 -6.5697 -6.8990 23 6 2.8078 -4.5584 -5.8312 24 6 1.9027 -3.7670 -5.1616 25 6 3.2854 -2.9234 -1.4267 26 8 2.9125 -3.9210 -1.9973 27 8 4.4639 -2.9186 -0.7841 28 1 -0.5401 0.9352 -0.0004 29 1 -0.5400 -0.9354 -0.0045 30 1 2.2450 1.6198 1.0277 31 1 3.0158 1.1749 -0.5138 32 1 1.4743 2.0647 -0.5139 33 1 2.9742 -1.1985 0.5900 34 1 1.4386 -2.0852 0.4352 35 1 0.4401 -2.3567 -1.7634 36 1 3.8826 -1.1233 -4.4279 37 1 5.5292 -2.5123 -5.6080 38 1 6.9470 -2.6339 -7.9872 39 1 2.5028 -5.5165 -6.2253 40 1 0.8859 -4.1062 -5.0295 41 1 4.9789 -3.7369 -0.8054 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001602757640.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:56:18 Heat of formation + Delta-G solvation = -139.116171 kcal Electronic energy + Delta-G solvation = -28093.759261 eV Core-core repulsion = 24065.443971 eV Total energy + Delta-G solvation = -4028.315290 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.18119 -37.51849 -37.32152 -36.48807 -35.90183 -35.17212 -34.02556 -33.96401 -30.22110 -29.49243 -29.40659 -27.37225 -25.79138 -24.95856 -21.49112 -21.32049 -21.05766 -19.29142 -18.58154 -17.88508 -17.57902 -17.13348 -16.76331 -16.54268 -15.67729 -15.47962 -15.38270 -14.68380 -14.45942 -14.19556 -14.07122 -13.51729 -13.36990 -13.19046 -12.86841 -12.65740 -12.38891 -12.17161 -11.80875 -11.71817 -11.64449 -11.49427 -11.40140 -11.38382 -11.34334 -11.23079 -11.18534 -11.15502 -10.82831 -10.65862 -10.41284 -9.78967 -9.67130 -9.46058 -9.26497 -9.08641 -7.89821 -7.63780 -7.10670 -4.75702 1.16451 2.07351 2.30106 2.46918 2.88100 2.90129 2.96576 2.99301 3.04914 3.65081 3.69022 4.25654 4.49409 4.64618 4.69892 4.76260 5.00798 5.09725 5.34181 5.40648 5.46862 5.54543 5.56982 5.69309 5.83311 5.91988 5.96084 6.09805 6.16116 6.53313 6.70024 6.71380 6.74273 6.77082 6.92091 7.10325 7.13148 7.38893 7.48797 7.66105 7.81443 8.01832 8.09267 8.35549 8.55947 8.70185 9.80975 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.016835 B = 0.003783 C = 0.003507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.803478 B = 7399.012503 C = 7982.653866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.122 4.122 3 C -0.122 4.122 4 C -0.083 4.083 5 C 0.177 3.823 6 H 0.129 0.871 7 N -1.100 6.100 8 S 2.688 3.312 9 O -0.980 6.980 10 O -0.978 6.978 11 C -0.777 4.777 12 C -0.022 4.022 13 C -0.180 4.180 14 C 0.144 3.856 15 C -0.438 4.438 16 H 0.086 0.914 17 C 0.073 3.927 18 N -0.767 5.767 19 Si 0.915 3.085 20 H -0.266 1.266 21 H -0.271 1.271 22 H -0.257 1.257 23 C -0.237 4.237 24 C 0.017 3.983 25 C 0.450 3.550 26 O -0.474 6.474 27 O -0.521 6.521 28 H 0.099 0.901 29 H 0.097 0.903 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.097 0.903 34 H 0.081 0.919 35 H 0.414 0.586 36 H 0.099 0.901 37 H 0.120 0.880 38 H 0.288 0.712 39 H 0.098 0.902 40 H 0.101 0.899 41 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.935 3.543 14.295 14.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.122 4.122 3 C -0.178 4.178 4 C -0.122 4.122 5 C 0.066 3.934 6 H 0.146 0.854 7 N -0.854 5.854 8 S 2.787 3.213 9 O -0.970 6.970 10 O -0.968 6.968 11 C -0.874 4.874 12 C -0.042 4.042 13 C -0.200 4.200 14 C 0.140 3.860 15 C -0.466 4.466 16 H 0.104 0.896 17 C -0.149 4.149 18 N -0.390 5.390 19 Si 0.738 3.262 20 H -0.191 1.191 21 H -0.196 1.196 22 H -0.181 1.181 23 C -0.257 4.257 24 C -0.003 4.003 25 C 0.288 3.712 26 O -0.358 6.358 27 O -0.333 6.333 28 H 0.117 0.883 29 H 0.115 0.885 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.115 0.885 34 H 0.099 0.901 35 H 0.248 0.752 36 H 0.117 0.883 37 H 0.138 0.862 38 H 0.100 0.900 39 H 0.116 0.884 40 H 0.119 0.881 41 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -2.587 4.582 13.607 14.589 hybrid contribution 1.249 -1.779 -0.349 2.201 sum -1.338 2.803 13.258 13.617 Atomic orbital electron populations 1.23739 0.95246 1.02004 1.01651 1.21539 0.95390 0.95082 1.00159 1.20881 1.00696 0.94427 1.01818 1.20888 1.01946 0.95860 0.93471 1.20024 0.85137 0.92715 0.95502 0.85358 1.55771 1.20210 1.79384 1.30027 1.01450 0.74040 0.74050 0.71749 1.93499 1.40199 1.84062 1.79269 1.93497 1.82624 1.35150 1.85575 1.28969 1.12565 1.14610 1.31280 1.20204 0.91574 0.96503 0.95953 1.21282 0.99131 0.96802 1.02791 1.17817 0.90733 0.91327 0.86109 1.19920 1.04263 0.95796 1.26589 0.89568 1.26121 0.99769 0.95317 0.93676 1.69829 1.30017 1.11905 1.27207 0.86172 0.79490 0.80694 0.79810 1.19122 1.19613 1.18062 1.20980 0.93918 1.01084 1.09741 1.20049 0.97081 0.91252 0.91927 1.24066 0.80394 0.91067 0.75719 1.90808 1.71506 1.34302 1.39142 1.84462 1.32657 1.45437 1.70702 0.88255 0.88458 0.91523 0.91353 0.91534 0.88493 0.90076 0.75191 0.88301 0.86184 0.90041 0.88380 0.88067 0.73172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.87 13.68 29.01 0.40 -1.47 16 2 C -0.12 -1.23 5.08 -101.07 -0.51 -1.74 16 3 C -0.12 -1.13 10.03 36.01 0.36 -0.77 16 4 C -0.08 -0.81 4.94 -27.88 -0.14 -0.95 16 5 C 0.18 2.33 2.80 -69.08 -0.19 2.14 16 6 H 0.13 1.73 7.50 -51.93 -0.39 1.34 16 7 N -1.10 -16.27 4.50 -5.88 -0.03 -16.30 16 8 S 2.69 52.33 5.71 -107.50 -0.61 51.72 16 9 O -0.98 -21.12 17.26 -57.17 -0.99 -22.11 16 10 O -0.98 -20.43 16.59 -57.17 -0.95 -21.38 16 11 C -0.78 -17.52 5.17 -39.29 -0.20 -17.72 16 12 C -0.02 -0.51 9.49 -39.66 -0.38 -0.89 16 13 C -0.18 -4.54 8.70 -38.87 -0.34 -4.88 16 14 C 0.14 3.73 5.57 -106.82 -0.60 3.13 16 15 C -0.44 -10.98 9.05 -37.74 -0.34 -11.33 16 16 H 0.09 2.06 7.91 -52.49 -0.41 1.64 16 17 C 0.07 1.71 5.14 -17.34 -0.09 1.62 16 18 N -0.77 -18.60 10.97 55.55 0.61 -17.99 16 19 Si 0.92 17.22 29.59 -169.99 -5.03 12.19 16 20 H -0.27 -4.96 7.11 56.52 0.40 -4.56 16 21 H -0.27 -4.97 7.11 56.52 0.40 -4.57 16 22 H -0.26 -4.80 7.11 56.52 0.40 -4.40 16 23 C -0.24 -5.84 9.80 -38.87 -0.38 -6.22 16 24 C 0.02 0.40 9.49 -39.66 -0.38 0.03 16 25 C 0.45 6.56 7.69 36.01 0.28 6.84 16 26 O -0.47 -8.65 16.38 -18.75 -0.31 -8.95 16 27 O -0.52 -6.05 13.23 -39.25 -0.52 -6.57 16 28 H 0.10 0.90 8.04 -52.49 -0.42 0.48 16 29 H 0.10 0.87 7.99 -52.48 -0.42 0.45 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.64 8.12 -51.93 -0.42 0.22 16 32 H 0.07 0.63 8.06 -51.93 -0.42 0.21 16 33 H 0.10 0.80 7.99 -51.93 -0.42 0.39 16 34 H 0.08 0.70 7.99 -51.93 -0.41 0.29 16 35 H 0.41 5.16 8.84 -34.47 -0.30 4.85 16 36 H 0.10 2.11 7.59 -52.49 -0.40 1.71 16 37 H 0.12 3.06 6.18 -52.49 -0.32 2.74 16 38 H 0.29 6.26 8.30 -40.82 -0.34 5.92 16 39 H 0.10 2.25 8.06 -52.49 -0.42 1.83 16 40 H 0.10 2.19 7.60 -52.49 -0.40 1.80 16 41 H 0.41 3.47 9.10 45.56 0.41 3.88 16 LS Contribution 369.58 15.07 5.57 5.57 Total: -1.00 -32.66 369.58 -9.07 -41.73 By element: Atomic # 1 Polarization: 18.59 SS G_CDS: -4.31 Total: 14.29 kcal Atomic # 6 Polarization: -29.69 SS G_CDS: -2.51 Total: -32.20 kcal Atomic # 7 Polarization: -34.87 SS G_CDS: 0.58 Total: -34.29 kcal Atomic # 8 Polarization: -56.24 SS G_CDS: -2.76 Total: -59.01 kcal Atomic # 14 Polarization: 17.22 SS G_CDS: -5.03 Total: 12.19 kcal Atomic # 16 Polarization: 52.33 SS G_CDS: -0.61 Total: 51.72 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.66 -9.07 -41.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001602757640.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.384 kcal (2) G-P(sol) polarization free energy of solvation -32.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds