Wall clock time and date at job start Tue Mar 31 2020 22:56:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50700 * 119.99433 * 2 1 4 4 C 1.50697 * 120.00098 * 179.97438 * 2 1 3 5 5 C 1.53002 * 109.47211 * 95.00284 * 4 2 1 6 6 H 1.08996 * 109.47252 * 54.99688 * 5 4 2 7 7 N 1.46498 * 109.46788 * 294.99713 * 5 4 2 8 8 S 1.65600 * 119.99913 * 145.00140 * 7 5 4 9 9 O 1.42100 * 106.40399 * 178.54048 * 8 7 5 10 10 O 1.42101 * 106.40236 * 311.45789 * 8 7 5 11 11 C 1.76199 * 107.21707 * 64.99852 * 8 7 5 12 12 C 1.38637 * 119.74940 * 269.72471 * 11 8 7 13 13 C 1.37624 * 120.24707 * 179.72025 * 12 11 8 14 14 C 1.40711 * 119.74021 * 0.57629 * 13 12 11 15 15 C 1.41404 * 120.23847 * 179.67885 * 14 13 12 16 16 H 1.07998 * 119.99629 * 155.31005 * 15 14 13 17 17 C 1.39942 * 120.00222 * 335.30980 * 15 14 13 18 18 N 1.30823 * 120.00141 * 342.23770 * 17 15 14 19 19 Si 1.86799 * 119.99740 * 162.23087 * 17 15 14 20 20 H 1.48502 * 109.46819 * 94.67167 * 19 17 15 21 21 H 1.48504 * 109.46983 * 214.66635 * 19 17 15 22 22 H 1.48501 * 109.47498 * 334.66535 * 19 17 15 23 23 C 1.40712 * 119.51681 * 359.70204 * 14 13 12 24 24 C 1.37618 * 119.74545 * 0.02562 * 23 14 13 25 25 C 1.50699 * 109.47223 * 174.99908 * 5 4 2 26 26 O 1.20825 * 120.00190 * 119.99453 * 25 5 4 27 27 O 1.34228 * 119.99723 * 300.00084 * 25 5 4 28 28 H 1.07997 * 120.00679 * 0.02562 * 1 2 3 29 29 H 1.08006 * 119.99602 * 179.72676 * 1 2 3 30 30 H 1.09002 * 109.47074 * 90.00031 * 3 2 1 31 31 H 1.09004 * 109.46785 * 209.99766 * 3 2 1 32 32 H 1.08997 * 109.47007 * 329.99389 * 3 2 1 33 33 H 1.09005 * 109.46819 * 215.00033 * 4 2 1 34 34 H 1.08999 * 109.46992 * 335.00164 * 4 2 1 35 35 H 0.97006 * 120.00578 * 324.99844 * 7 5 4 36 36 H 1.08000 * 119.87600 * 359.97438 * 12 11 8 37 37 H 1.07999 * 120.12555 * 180.27860 * 13 12 11 38 38 H 0.96998 * 120.00140 * 179.97438 * 18 17 15 39 39 H 1.07999 * 120.12643 * 179.97438 * 23 14 13 40 40 H 1.08001 * 119.87741 * 180.02562 * 24 23 14 41 41 H 0.96706 * 116.99936 * 179.97438 * 27 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 2.0635 -1.3051 0.0006 5 6 2.4275 -1.6845 -1.4363 6 1 2.9771 -0.8655 -1.9002 7 7 1.2032 -1.9442 -2.1977 8 16 1.1219 -1.5338 -3.8000 9 8 -0.1621 -1.9397 -4.2536 10 8 1.5932 -0.1967 -3.8961 11 6 2.2916 -2.5364 -4.6551 12 6 3.5921 -2.0860 -4.8219 13 6 4.5155 -2.8632 -5.4831 14 6 4.1321 -4.1139 -6.0013 15 6 5.0705 -4.9181 -6.6885 16 1 4.9326 -5.9882 -6.7355 17 6 6.1778 -4.3273 -7.3075 18 7 6.1793 -3.0434 -7.5584 19 14 7.6540 -5.3721 -7.7753 20 1 7.5282 -5.8005 -9.1917 21 1 8.8967 -4.5766 -7.6073 22 1 7.7106 -6.5697 -6.8990 23 6 2.8078 -4.5584 -5.8312 24 6 1.9027 -3.7670 -5.1616 25 6 3.2854 -2.9234 -1.4267 26 8 2.9125 -3.9210 -1.9973 27 8 4.4639 -2.9186 -0.7841 28 1 -0.5401 0.9352 -0.0004 29 1 -0.5400 -0.9354 -0.0045 30 1 2.2450 1.6198 1.0277 31 1 3.0158 1.1749 -0.5138 32 1 1.4743 2.0647 -0.5139 33 1 2.9742 -1.1985 0.5900 34 1 1.4386 -2.0852 0.4352 35 1 0.4401 -2.3567 -1.7634 36 1 3.8826 -1.1233 -4.4279 37 1 5.5292 -2.5123 -5.6080 38 1 6.9470 -2.6339 -7.9872 39 1 2.5028 -5.5165 -6.2253 40 1 0.8859 -4.1062 -5.0295 41 1 4.9789 -3.7369 -0.8054 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001602757640.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:56:17 Heat of formation + Delta-G solvation = -161.854920 kcal Electronic energy + Delta-G solvation = -28094.745287 eV Core-core repulsion = 24065.443971 eV Total energy + Delta-G solvation = -4029.301316 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.31455 -39.36556 -38.38281 -38.02662 -37.00527 -36.84072 -35.80080 -35.03120 -32.06933 -31.28870 -30.52006 -28.08644 -27.62327 -25.92395 -23.31218 -22.98075 -22.36892 -20.67143 -19.54583 -19.42413 -19.08968 -18.54632 -18.16711 -17.91449 -17.19172 -16.91196 -16.48095 -16.03489 -15.83933 -15.41159 -15.19945 -15.08484 -14.92983 -14.41772 -14.13233 -13.98983 -13.81948 -13.66036 -13.53178 -13.16911 -13.07477 -12.97410 -12.88185 -12.75136 -12.57755 -12.52614 -12.36140 -12.34481 -12.08375 -12.02425 -11.81737 -11.54964 -11.33233 -11.19557 -10.65842 -9.86951 -9.76167 -9.52724 -8.86939 -6.64599 -0.40522 0.50290 1.07171 1.19299 1.34527 1.40421 1.44469 1.51492 1.88800 2.11227 2.31310 2.53706 2.88186 3.47352 3.54886 3.71189 3.85943 3.94988 4.15379 4.27491 4.29277 4.37176 4.47378 4.77924 4.84523 4.86558 4.92687 4.95427 5.00861 5.09183 5.13298 5.25639 5.26790 5.52564 5.60897 5.70170 5.74663 5.80641 5.92386 5.98558 6.04412 6.16792 6.48751 6.69048 6.82097 7.04933 8.08657 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.016835 B = 0.003783 C = 0.003507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.803478 B = 7399.012503 C = 7982.653866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.133 4.133 3 C -0.126 4.126 4 C -0.074 4.074 5 C 0.170 3.830 6 H 0.128 0.872 7 N -1.085 6.085 8 S 2.720 3.280 9 O -0.999 6.999 10 O -0.989 6.989 11 C -0.787 4.787 12 C -0.022 4.022 13 C -0.201 4.201 14 C 0.116 3.884 15 C -0.471 4.471 16 H 0.087 0.913 17 C 0.036 3.964 18 N -0.799 5.799 19 Si 0.991 3.009 20 H -0.260 1.260 21 H -0.260 1.260 22 H -0.255 1.255 23 C -0.259 4.259 24 C 0.010 3.990 25 C 0.455 3.545 26 O -0.517 6.517 27 O -0.509 6.509 28 H 0.104 0.896 29 H 0.105 0.895 30 H 0.084 0.916 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.117 0.883 34 H 0.095 0.905 35 H 0.428 0.572 36 H 0.116 0.884 37 H 0.111 0.889 38 H 0.298 0.702 39 H 0.104 0.896 40 H 0.115 0.885 41 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.490 3.860 15.811 16.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.133 4.133 3 C -0.182 4.182 4 C -0.113 4.113 5 C 0.060 3.940 6 H 0.146 0.854 7 N -0.844 5.844 8 S 2.816 3.184 9 O -0.989 6.989 10 O -0.979 6.979 11 C -0.880 4.880 12 C -0.042 4.042 13 C -0.221 4.221 14 C 0.113 3.887 15 C -0.498 4.498 16 H 0.105 0.895 17 C -0.183 4.183 18 N -0.422 5.422 19 Si 0.810 3.190 20 H -0.185 1.185 21 H -0.184 1.184 22 H -0.179 1.179 23 C -0.279 4.279 24 C -0.010 4.010 25 C 0.294 3.706 26 O -0.404 6.404 27 O -0.322 6.322 28 H 0.122 0.878 29 H 0.123 0.877 30 H 0.103 0.897 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.135 0.865 34 H 0.114 0.886 35 H 0.265 0.735 36 H 0.134 0.866 37 H 0.129 0.871 38 H 0.110 0.890 39 H 0.122 0.878 40 H 0.133 0.867 41 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges -2.120 4.888 15.121 16.032 hybrid contribution 1.031 -1.786 -0.692 2.176 sum -1.089 3.101 14.428 14.798 Atomic orbital electron populations 1.23955 0.95433 1.02747 1.01117 1.21672 0.95623 0.95410 1.00590 1.20939 1.00334 0.94033 1.02914 1.20907 1.03209 0.96144 0.91025 1.20323 0.84159 0.92066 0.97430 0.85406 1.55270 1.21600 1.79293 1.28200 1.00517 0.72580 0.73090 0.72246 1.93470 1.40751 1.84207 1.80490 1.93483 1.82662 1.35499 1.86277 1.29514 1.12917 1.14405 1.31153 1.20405 0.91747 0.96842 0.95201 1.21293 0.99254 0.97428 1.04172 1.18147 0.91536 0.92050 0.86970 1.20187 1.05744 0.95971 1.27906 0.89465 1.26992 1.01983 0.96454 0.92856 1.69856 1.31265 1.13500 1.27585 0.85052 0.75650 0.78780 0.79493 1.18451 1.18403 1.17885 1.21190 0.94104 1.01888 1.10714 1.20292 0.97568 0.91607 0.91555 1.24286 0.80805 0.90739 0.74793 1.90808 1.72573 1.35911 1.41124 1.84422 1.31683 1.46418 1.69677 0.87797 0.87655 0.89732 0.91615 0.92112 0.86505 0.88603 0.73498 0.86646 0.87141 0.89038 0.87815 0.86659 0.71444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.39 13.68 67.78 0.93 -2.46 16 2 C -0.13 -2.35 5.08 -16.49 -0.08 -2.43 16 3 C -0.13 -2.05 10.03 71.24 0.71 -1.34 16 4 C -0.07 -1.23 4.94 29.85 0.15 -1.09 16 5 C 0.17 4.15 2.80 44.25 0.12 4.28 16 6 H 0.13 3.20 7.50 -2.39 -0.02 3.18 16 7 N -1.08 -30.22 4.50 -172.53 -0.78 -30.99 16 8 S 2.72 102.91 5.71 -56.49 -0.32 102.59 16 9 O -1.00 -41.92 17.26 -128.00 -2.21 -44.12 16 10 O -0.99 -39.98 16.59 -128.00 -2.12 -42.10 16 11 C -0.79 -35.44 5.17 22.46 0.12 -35.32 16 12 C -0.02 -1.03 9.49 22.22 0.21 -0.82 16 13 C -0.20 -10.45 8.70 22.73 0.20 -10.25 16 14 C 0.12 6.24 5.57 -21.29 -0.12 6.12 16 15 C -0.47 -24.29 9.05 23.46 0.21 -24.08 16 16 H 0.09 4.29 7.91 -2.91 -0.02 4.27 16 17 C 0.04 1.71 5.14 85.26 0.44 2.15 16 18 N -0.80 -39.34 10.97 21.83 0.24 -39.10 16 19 Si 0.99 35.09 29.59 68.60 2.03 37.12 16 20 H -0.26 -8.90 7.11 99.48 0.71 -8.19 16 21 H -0.26 -8.65 7.11 99.48 0.71 -7.94 16 22 H -0.26 -8.88 7.11 99.48 0.71 -8.17 16 23 C -0.26 -13.14 9.80 22.73 0.22 -12.92 16 24 C 0.01 0.46 9.49 22.22 0.21 0.67 16 25 C 0.45 12.58 7.69 71.24 0.55 13.13 16 26 O -0.52 -18.58 16.38 21.97 0.36 -18.22 16 27 O -0.51 -10.86 13.23 -51.40 -0.68 -11.54 16 28 H 0.10 1.67 8.04 -2.91 -0.02 1.65 16 29 H 0.11 1.61 7.99 -2.91 -0.02 1.58 16 30 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.06 1.10 8.12 -2.39 -0.02 1.08 16 32 H 0.06 1.05 8.06 -2.39 -0.02 1.03 16 33 H 0.12 1.53 7.99 -2.38 -0.02 1.51 16 34 H 0.10 1.34 7.99 -2.39 -0.02 1.32 16 35 H 0.43 9.75 8.84 -96.74 -0.85 8.89 16 36 H 0.12 4.90 7.59 -2.91 -0.02 4.88 16 37 H 0.11 5.83 6.18 -2.91 -0.02 5.81 16 38 H 0.30 13.01 8.30 -92.71 -0.77 12.24 16 39 H 0.10 4.95 8.06 -2.91 -0.02 4.92 16 40 H 0.12 5.01 7.60 -2.91 -0.02 4.99 16 41 H 0.42 6.50 9.10 -74.05 -0.67 5.83 16 Total: -1.00 -70.76 369.58 -0.06 -70.82 By element: Atomic # 1 Polarization: 40.37 SS G_CDS: -0.45 Total: 39.92 kcal Atomic # 6 Polarization: -68.23 SS G_CDS: 3.87 Total: -64.37 kcal Atomic # 7 Polarization: -69.56 SS G_CDS: -0.54 Total: -70.10 kcal Atomic # 8 Polarization: -111.33 SS G_CDS: -4.65 Total: -115.99 kcal Atomic # 14 Polarization: 35.09 SS G_CDS: 2.03 Total: 37.12 kcal Atomic # 16 Polarization: 102.91 SS G_CDS: -0.32 Total: 102.59 kcal Total: -70.76 -0.06 -70.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001602757640.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.035 kcal (2) G-P(sol) polarization free energy of solvation -70.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds