Wall clock time and date at job start Tue Mar 31 2020 22:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50701 * 119.99506 * 2 1 4 4 N 1.46508 * 109.46655 * 125.00828 * 3 2 1 5 5 C 1.46504 * 119.99635 * 275.00001 * 4 3 2 6 6 C 1.50701 * 109.46952 * 276.22087 * 5 4 3 7 7 H 1.07994 * 120.00228 * 0.02562 * 6 5 4 8 8 C 1.37879 * 119.99488 * 180.02562 * 6 5 4 9 9 N 1.31509 * 120.00623 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 119.99803 * 180.02562 * 8 6 5 11 11 H 1.48508 * 109.47102 * 59.99882 * 10 8 6 12 12 H 1.48492 * 109.47378 * 180.02562 * 10 8 6 13 13 H 1.48510 * 109.46923 * 300.00286 * 10 8 6 14 14 S 1.65594 * 119.99913 * 94.99981 * 4 3 2 15 15 O 1.42107 * 106.39899 * 151.91675 * 14 4 3 16 16 O 1.42093 * 106.40546 * 18.99553 * 14 4 3 17 17 C 1.76198 * 107.21685 * 265.45303 * 14 4 3 18 18 C 1.37960 * 120.08221 * 345.33737 * 17 14 4 19 19 C 1.38344 * 120.15805 * 179.97438 * 18 17 14 20 20 C 1.38396 * 120.29806 * 359.97438 * 19 18 17 21 21 C 1.37920 * 120.15163 * 0.28110 * 20 19 18 22 22 C 1.50696 * 120.07767 * 179.72270 * 21 20 19 23 23 C 1.39611 * 120.07562 * 165.31519 * 17 14 4 24 24 C 1.47731 * 120.15109 * 0.03975 * 23 17 14 25 25 O 1.21479 * 119.99850 * 84.76930 * 24 23 17 26 26 O 1.34711 * 120.00315 * 264.77713 * 24 23 17 27 27 H 1.08003 * 119.99556 * 180.02562 * 1 2 3 28 28 H 1.08003 * 120.00214 * 359.97438 * 1 2 3 29 29 H 1.07991 * 120.00301 * 180.02562 * 2 1 3 30 30 H 1.08999 * 109.47565 * 5.00907 * 3 2 1 31 31 H 1.08996 * 109.47511 * 245.00405 * 3 2 1 32 32 H 1.08995 * 109.47165 * 36.22519 * 5 4 3 33 33 H 1.09006 * 109.46651 * 156.22364 * 5 4 3 34 34 H 0.97001 * 120.00748 * 179.97438 * 9 8 6 35 35 H 1.08005 * 119.92124 * 359.95477 * 18 17 14 36 36 H 1.07997 * 119.85286 * 179.97438 * 19 18 17 37 37 H 1.08003 * 119.92520 * 180.02562 * 20 19 18 38 38 H 1.09007 * 109.47326 * 89.99815 * 22 21 20 39 39 H 1.08998 * 109.47435 * 209.99291 * 22 21 20 40 40 H 1.08999 * 109.47254 * 330.00041 * 22 21 20 41 41 H 0.96702 * 116.99867 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.5285 1.7619 2.4523 6 6 2.5708 3.2661 2.5346 7 1 2.9099 3.8439 1.6876 8 6 2.1765 3.9044 3.6914 9 7 1.7641 3.2008 4.7230 10 14 2.2282 5.7690 3.7932 11 1 1.3471 6.3465 2.7465 12 1 1.7579 6.2048 5.1326 13 1 3.6213 6.2378 3.5815 14 16 4.5713 0.8759 0.9171 15 8 5.3298 1.5880 1.8851 16 8 4.8250 0.9525 -0.4789 17 6 4.6852 -0.8280 1.3508 18 6 3.6624 -1.4331 2.0515 19 6 3.7500 -2.7710 2.3924 20 6 4.8625 -3.5117 2.0333 21 6 5.8947 -2.9181 1.3373 22 6 7.1082 -3.7246 0.9525 23 6 5.8107 -1.5691 0.9859 24 6 6.9102 -0.9279 0.2359 25 8 7.7782 -0.3211 0.8309 26 8 6.9501 -1.0160 -1.1077 27 1 -0.5399 -0.9354 0.0004 28 1 -0.5401 0.9353 0.0004 29 1 1.8500 -0.9352 -0.0004 30 1 1.3585 2.1317 0.0897 31 1 2.6211 1.4028 -0.9314 32 1 1.5059 1.4181 2.6070 33 1 3.1747 1.3376 3.2210 34 1 1.4871 3.6499 5.5370 35 1 2.7913 -0.8609 2.3348 36 1 2.9465 -3.2396 2.9413 37 1 4.9244 -4.5558 2.3022 38 1 6.9496 -4.1747 -0.0275 39 1 7.9810 -3.0728 0.9159 40 1 7.2717 -4.5097 1.6907 41 1 7.6887 -0.5800 -1.5545 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001602890696.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:24 Heat of formation + Delta-G solvation = -131.539833 kcal Electronic energy + Delta-G solvation = -28476.058023 eV Core-core repulsion = 24448.071268 eV Total energy + Delta-G solvation = -4027.986755 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.90462 -40.01883 -38.42887 -38.06557 -37.37832 -37.04912 -35.02820 -34.21353 -33.57782 -32.83152 -29.38267 -28.49300 -26.60226 -25.98249 -24.26886 -23.87813 -22.32795 -21.00971 -19.90139 -19.58830 -19.03047 -18.59656 -18.42955 -18.01110 -17.51752 -17.27854 -16.47004 -16.17784 -15.96186 -15.88171 -15.36030 -15.14871 -14.87267 -14.67260 -14.42649 -14.24770 -13.88636 -13.67308 -13.54687 -13.38193 -13.31201 -13.21855 -13.11819 -13.02025 -12.88010 -12.75518 -12.53805 -12.38503 -12.32068 -12.12524 -12.00745 -11.74984 -11.68556 -10.59995 -10.51296 -10.29422 -10.05640 -9.93434 -8.21489 -6.32222 -0.77749 -0.54472 -0.08553 0.56815 1.34566 1.38902 1.42925 1.49522 1.67499 1.94449 2.23684 2.40511 2.49662 3.10407 3.38175 3.50157 3.71499 3.84584 3.86281 3.99287 4.09226 4.14951 4.23205 4.39060 4.46150 4.61140 4.66835 4.73947 4.81680 4.93144 5.01388 5.09256 5.09514 5.12385 5.15417 5.18757 5.36217 5.61844 5.63614 5.73934 5.78937 5.98993 6.08328 6.57849 6.73970 7.36016 8.86312 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.013506 B = 0.004526 C = 0.004202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2072.691899 B = 6185.387531 C = 6662.657855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.192 4.192 3 C 0.137 3.863 4 N -0.975 5.975 5 C 0.270 3.730 6 C -0.552 4.552 7 H 0.052 0.948 8 C 0.018 3.982 9 N -0.920 5.920 10 Si 0.952 3.048 11 H -0.261 1.261 12 H -0.274 1.274 13 H -0.282 1.282 14 S 2.667 3.333 15 O -0.987 6.987 16 O -0.976 6.976 17 C -0.645 4.645 18 C -0.046 4.046 19 C -0.099 4.099 20 C -0.058 4.058 21 C -0.064 4.064 22 C -0.123 4.123 23 C -0.054 4.054 24 C 0.510 3.490 25 O -0.525 6.525 26 O -0.481 6.481 27 H 0.123 0.877 28 H 0.099 0.901 29 H 0.115 0.885 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.045 0.955 33 H 0.015 0.985 34 H 0.268 0.732 35 H 0.145 0.855 36 H 0.181 0.819 37 H 0.193 0.807 38 H 0.103 0.897 39 H 0.050 0.950 40 H 0.112 0.888 41 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.413 -19.313 -9.213 21.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.212 4.212 3 C 0.013 3.987 4 N -0.814 5.814 5 C 0.147 3.853 6 C -0.591 4.591 7 H 0.070 0.930 8 C -0.182 4.182 9 N -0.559 5.559 10 Si 0.776 3.224 11 H -0.185 1.185 12 H -0.199 1.199 13 H -0.208 1.208 14 S 2.760 3.240 15 O -0.977 6.977 16 O -0.966 6.966 17 C -0.733 4.733 18 C -0.065 4.065 19 C -0.117 4.117 20 C -0.075 4.075 21 C -0.065 4.065 22 C -0.179 4.179 23 C -0.057 4.057 24 C 0.352 3.648 25 O -0.415 6.415 26 O -0.294 6.294 27 H 0.141 0.859 28 H 0.118 0.882 29 H 0.133 0.867 30 H 0.110 0.890 31 H 0.110 0.890 32 H 0.063 0.937 33 H 0.033 0.967 34 H 0.077 0.923 35 H 0.162 0.838 36 H 0.198 0.802 37 H 0.210 0.790 38 H 0.121 0.879 39 H 0.069 0.931 40 H 0.131 0.869 41 H 0.296 0.704 Dipole moment (debyes) X Y Z Total from point charges 1.947 -18.763 -8.984 20.894 hybrid contribution 0.560 1.365 0.280 1.502 sum 2.507 -17.399 -8.704 19.616 Atomic orbital electron populations 1.24058 0.95077 1.03142 0.97185 1.23312 0.97165 0.97834 1.02871 1.20634 0.92833 0.97587 0.87676 1.57184 1.26904 1.79120 1.18218 1.18774 0.95743 0.93963 0.76776 1.21756 1.44266 0.93284 0.99832 0.93022 1.25657 0.94556 1.03003 0.95030 1.69969 1.44416 1.37309 1.04223 0.85710 0.78413 0.80222 0.78008 1.18524 1.19915 1.20814 1.02375 0.73563 0.74893 0.73181 1.93600 1.69839 1.71226 1.63075 1.93504 1.84438 1.87264 1.31411 1.30819 1.02365 1.25407 1.14732 1.21211 0.95643 0.97290 0.92342 1.21995 0.99713 0.92377 0.97648 1.21853 0.90587 1.02296 0.92797 1.20451 0.98975 0.90021 0.97051 1.21062 0.92112 0.99841 1.04908 1.18573 0.91541 0.96048 0.99547 1.21446 0.84640 0.76547 0.82193 1.90986 1.39289 1.40160 1.71048 1.84636 1.54182 1.71881 1.18673 0.85886 0.88239 0.86730 0.89033 0.89013 0.93697 0.96683 0.92259 0.83777 0.80159 0.79025 0.87900 0.93079 0.86905 0.70377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.64 14.32 67.78 0.97 -2.67 16 2 C -0.19 -5.32 9.83 25.64 0.25 -5.07 16 3 C 0.14 4.82 6.10 85.63 0.52 5.34 16 4 N -0.97 -41.88 1.97 -523.89 -1.03 -42.91 16 5 C 0.27 13.64 4.17 85.63 0.36 14.00 16 6 C -0.55 -31.49 9.37 25.60 0.24 -31.25 16 7 H 0.05 2.97 7.81 -2.91 -0.02 2.94 16 8 C 0.02 1.00 5.46 84.66 0.46 1.46 16 9 N -0.92 -53.39 13.29 21.45 0.28 -53.11 16 10 Si 0.95 44.93 29.54 68.60 2.03 46.95 16 11 H -0.26 -11.59 7.11 99.48 0.71 -10.89 16 12 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 13 H -0.28 -13.63 7.11 99.48 0.71 -12.93 16 14 S 2.67 120.55 4.83 -56.49 -0.27 120.28 16 15 O -0.99 -55.07 17.13 -128.00 -2.19 -57.26 16 16 O -0.98 -43.39 15.26 -127.27 -1.94 -45.33 16 17 C -0.65 -23.63 5.87 22.54 0.13 -23.50 16 18 C -0.05 -1.36 9.04 22.23 0.20 -1.16 16 19 C -0.10 -1.94 10.04 22.33 0.22 -1.71 16 20 C -0.06 -0.96 9.69 22.23 0.22 -0.74 16 21 C -0.06 -1.47 5.91 -19.60 -0.12 -1.58 16 22 C -0.12 -1.92 9.62 71.23 0.68 -1.23 16 23 C -0.05 -1.81 5.75 -20.10 -0.12 -1.93 16 24 C 0.51 18.01 4.40 70.33 0.31 18.32 16 25 O -0.52 -21.86 17.89 19.90 0.36 -21.50 16 26 O -0.48 -13.28 13.23 -55.64 -0.74 -14.01 16 27 H 0.12 2.16 8.06 -2.91 -0.02 2.13 16 28 H 0.10 2.34 7.84 -2.91 -0.02 2.31 16 29 H 0.11 2.89 7.53 -2.92 -0.02 2.87 16 30 H 0.09 3.23 7.76 -2.39 -0.02 3.21 16 31 H 0.09 3.12 6.88 -2.39 -0.02 3.10 16 32 H 0.05 2.21 8.12 -2.39 -0.02 2.19 16 33 H 0.02 0.83 7.69 -2.38 -0.02 0.81 16 34 H 0.27 14.68 8.31 -92.71 -0.77 13.91 16 35 H 0.14 4.36 6.49 -2.91 -0.02 4.34 16 36 H 0.18 2.04 8.06 -2.91 -0.02 2.02 16 37 H 0.19 1.16 8.06 -2.91 -0.02 1.13 16 38 H 0.10 1.21 8.14 -2.38 -0.02 1.19 16 39 H 0.05 0.99 7.09 -2.39 -0.02 0.97 16 40 H 0.11 1.02 8.09 -2.39 -0.02 1.00 16 41 H 0.43 7.60 9.11 -74.06 -0.67 6.92 16 Total: -1.00 -84.22 369.06 1.22 -83.00 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: 0.39 Total: 15.62 kcal Atomic # 6 Polarization: -36.06 SS G_CDS: 4.34 Total: -31.72 kcal Atomic # 7 Polarization: -95.27 SS G_CDS: -0.75 Total: -96.01 kcal Atomic # 8 Polarization: -133.59 SS G_CDS: -4.52 Total: -138.11 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.95 kcal Atomic # 16 Polarization: 120.55 SS G_CDS: -0.27 Total: 120.28 kcal Total: -84.22 1.22 -83.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001602890696.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.545 kcal (2) G-P(sol) polarization free energy of solvation -84.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds