Wall clock time and date at job start Tue Mar 31 2020 21:55:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86805 * 120.00288 * 2 1 4 4 H 1.48498 * 109.47113 * 275.31936 * 3 2 1 5 5 H 1.48497 * 109.46828 * 35.32052 * 3 2 1 6 6 H 1.48499 * 109.47130 * 155.32101 * 3 2 1 7 7 C 1.38816 * 119.99935 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99969 * 337.72338 * 7 2 1 9 9 N 1.36942 * 120.00019 * 157.71325 * 7 2 1 10 10 C 1.46492 * 119.99881 * 322.17494 * 9 7 2 11 11 C 1.53005 * 109.47406 * 274.99962 * 10 9 7 12 12 C 1.50697 * 109.47396 * 180.02562 * 11 10 9 13 13 O 1.20822 * 120.00197 * 359.97438 * 12 11 10 14 14 O 1.34233 * 119.99927 * 179.97438 * 12 11 10 15 15 S 1.65596 * 119.99787 * 142.17708 * 9 7 2 16 16 O 1.42101 * 106.40390 * 18.86614 * 15 9 7 17 17 O 1.42099 * 106.40259 * 151.79287 * 15 9 7 18 18 C 1.76206 * 107.21719 * 265.32903 * 15 9 7 19 19 C 1.38234 * 119.99951 * 274.36306 * 18 15 9 20 20 C 1.38242 * 119.99843 * 179.78334 * 19 18 15 21 21 C 1.38232 * 119.99700 * 0.44616 * 20 19 18 22 22 C 1.50697 * 119.99652 * 179.83400 * 21 20 19 23 23 C 1.52997 * 117.50320 * 8.72128 * 22 21 20 24 24 C 1.52999 * 117.49918 * 300.06080 * 22 21 20 25 25 C 1.38235 * 120.00304 * 359.80361 * 21 20 19 26 26 C 1.38232 * 120.00016 * 94.63129 * 18 15 9 27 27 H 0.97005 * 119.99783 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.48018 * 34.99817 * 10 9 7 29 29 H 1.09004 * 109.47279 * 155.00162 * 10 9 7 30 30 H 1.09005 * 109.46671 * 300.00212 * 11 10 9 31 31 H 1.08995 * 109.47299 * 59.99938 * 11 10 9 32 32 H 0.96705 * 116.99637 * 179.97438 * 14 12 11 33 33 H 1.07996 * 120.00207 * 0.02562 * 19 18 15 34 34 H 1.07993 * 119.99691 * 180.27229 * 20 19 18 35 35 H 1.09002 * 115.54980 * 154.39774 * 22 21 20 36 36 H 1.09003 * 117.49355 * 359.97438 * 23 22 21 37 37 H 1.08998 * 117.50573 * 145.02138 * 23 22 21 38 38 H 1.09000 * 117.50103 * 214.98591 * 24 22 21 39 39 H 1.09000 * 117.49888 * 359.97438 * 24 22 21 40 40 H 1.08001 * 120.00341 * 179.97438 * 25 21 20 41 41 H 1.08002 * 119.99879 * 359.97438 * 26 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3853 2.1113 -1.3940 5 1 1.5084 2.6176 0.8094 6 1 3.5994 1.4103 0.5846 7 6 2.0102 -1.2022 0.0005 8 1 1.5306 -2.1024 0.3555 9 7 3.3029 -1.2467 -0.4492 10 6 3.7064 -0.4351 -1.6000 11 6 3.3855 -1.1879 -2.8928 12 6 3.8011 -0.3532 -4.0767 13 8 4.3021 0.7326 -3.9042 14 8 3.6147 -0.8162 -5.3228 15 16 4.4099 -2.2181 0.3079 16 8 3.6644 -3.1733 1.0502 17 8 5.3695 -2.5762 -0.6771 18 6 5.2570 -1.2216 1.4886 19 6 6.3534 -0.4736 1.1022 20 6 7.0153 0.3117 2.0276 21 6 6.5862 0.3418 3.3413 22 6 7.3100 1.1949 4.3509 23 6 8.3776 2.1574 3.8268 24 6 8.7914 0.8989 4.5936 25 6 5.4929 -0.4102 3.7289 26 6 4.8285 -1.1920 2.8025 27 1 -0.4850 0.8401 -0.0004 28 1 3.1640 0.5103 -1.5861 29 1 4.7776 -0.2401 -1.5495 30 1 3.9279 -2.1333 -2.9068 31 1 2.3143 -1.3829 -2.9434 32 1 3.8969 -0.2447 -6.0501 33 1 6.6906 -0.4997 0.0766 34 1 7.8692 0.8994 1.7248 35 1 6.7153 1.5196 5.2047 36 1 8.5568 2.1732 2.7517 37 1 8.4855 3.1151 4.3359 38 1 9.1712 1.0291 5.6069 39 1 9.2423 0.0867 4.0234 40 1 5.1580 -0.3870 4.7553 41 1 3.9742 -1.7794 3.1053 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608186593.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:55:40 Heat of formation + Delta-G solvation = -104.111054 kcal Electronic energy + Delta-G solvation = -27853.081223 eV Core-core repulsion = 23826.283869 eV Total energy + Delta-G solvation = -4026.797354 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.98102 -39.43214 -36.67683 -36.60214 -36.07016 -35.74890 -34.66245 -32.52509 -30.79595 -30.47705 -30.37563 -25.31187 -24.06762 -23.68914 -22.83673 -22.15719 -20.86467 -20.36206 -18.60881 -17.97646 -17.64971 -16.94936 -16.68877 -16.41500 -16.02382 -15.60801 -15.32532 -15.09096 -14.60363 -14.40798 -13.88790 -13.41497 -13.35679 -13.16703 -12.98828 -12.89949 -12.81372 -12.67365 -12.10793 -11.71528 -11.62332 -11.50322 -11.30198 -11.16036 -11.06550 -10.94687 -10.88587 -10.78701 -10.77611 -10.46090 -10.37864 -10.29203 -10.15120 -9.88190 -9.17410 -8.66960 -8.61515 -8.32977 -6.79538 -4.28407 1.15303 1.53513 1.67065 2.49063 2.99341 3.12742 3.18797 3.29468 3.51618 3.91851 3.96980 4.17890 4.45522 4.60788 4.71389 4.80172 4.84491 4.94890 5.16410 5.19735 5.27051 5.39340 5.44217 5.49516 5.62688 5.66671 5.70734 5.81432 5.91452 5.94406 6.01094 6.09169 6.13258 6.28246 6.36747 6.52084 6.62584 6.70729 6.71506 6.80979 7.22863 7.29545 8.09503 8.14025 8.73411 8.78371 10.25900 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.011639 B = 0.004449 C = 0.004257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2405.176834 B = 6292.462189 C = 6576.379119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.072 3.928 3 Si 0.864 3.136 4 H -0.263 1.263 5 H -0.283 1.283 6 H -0.252 1.252 7 C -0.261 4.261 8 H 0.128 0.872 9 N -0.829 5.829 10 C 0.133 3.867 11 C -0.128 4.128 12 C 0.486 3.514 13 O -0.523 6.523 14 O -0.518 6.518 15 S 2.553 3.447 16 O -0.968 6.968 17 O -0.997 6.997 18 C -0.663 4.663 19 C -0.029 4.029 20 C -0.149 4.149 21 C -0.023 4.023 22 C -0.120 4.120 23 C -0.177 4.177 24 C -0.168 4.168 25 C -0.140 4.140 26 C -0.018 4.018 27 H 0.283 0.717 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.115 0.885 31 H 0.124 0.876 32 H 0.404 0.596 33 H 0.130 0.870 34 H 0.122 0.878 35 H 0.114 0.886 36 H 0.099 0.901 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.096 0.904 40 H 0.124 0.876 41 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.816 3.805 1.310 10.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C -0.144 4.144 3 Si 0.690 3.310 4 H -0.189 1.189 5 H -0.209 1.209 6 H -0.176 1.176 7 C -0.408 4.408 8 H 0.145 0.855 9 N -0.654 5.654 10 C 0.007 3.993 11 C -0.168 4.168 12 C 0.329 3.671 13 O -0.412 6.412 14 O -0.329 6.329 15 S 2.655 3.345 16 O -0.958 6.958 17 O -0.987 6.987 18 C -0.742 4.742 19 C -0.048 4.048 20 C -0.167 4.167 21 C -0.023 4.023 22 C -0.138 4.138 23 C -0.214 4.214 24 C -0.205 4.205 25 C -0.159 4.159 26 C -0.037 4.037 27 H 0.093 0.907 28 H 0.091 0.909 29 H 0.094 0.906 30 H 0.133 0.867 31 H 0.142 0.858 32 H 0.262 0.738 33 H 0.148 0.852 34 H 0.140 0.860 35 H 0.132 0.868 36 H 0.118 0.882 37 H 0.116 0.884 38 H 0.115 0.885 39 H 0.115 0.885 40 H 0.142 0.858 41 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 10.109 2.954 1.632 10.657 hybrid contribution 0.740 2.109 0.125 2.239 sum 10.849 5.063 1.757 12.100 Atomic orbital electron populations 1.69815 1.06369 1.29185 1.40208 1.25759 0.95303 0.99197 0.94188 0.87086 0.81798 0.83024 0.79056 1.18912 1.20944 1.17561 1.19358 0.83000 0.97004 1.41419 0.85510 1.53816 1.17734 1.62769 1.31033 1.21080 0.99932 0.94376 0.83950 1.21825 1.06175 0.99922 0.88841 1.23684 0.74087 0.85349 0.84004 1.90690 1.41454 1.22650 1.86376 1.84585 1.78638 1.52682 1.17027 1.09985 0.72664 0.78741 0.73118 1.93398 1.70198 1.59882 1.72334 1.93376 1.62762 1.83861 1.58665 1.32161 1.09909 1.18463 1.13700 1.20826 0.92402 0.92225 0.99378 1.21053 1.01382 1.01127 0.93187 1.19251 0.94688 0.95081 0.93262 1.21103 0.91100 1.01538 1.00106 1.23083 1.02970 0.94386 1.00929 1.23025 0.95975 0.99818 1.01697 1.21036 0.96563 0.98480 0.99785 1.20948 0.97055 0.94355 0.91334 0.90656 0.90920 0.90575 0.86667 0.85826 0.73834 0.85230 0.85982 0.86837 0.88229 0.88432 0.88462 0.88519 0.85824 0.84266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -20.59 13.97 55.49 0.78 -19.82 16 2 C 0.07 1.74 5.32 -17.43 -0.09 1.65 16 3 Si 0.86 19.12 25.05 -169.99 -4.26 14.86 16 4 H -0.26 -5.74 6.68 56.52 0.38 -5.36 16 5 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 6 H -0.25 -5.57 7.11 56.52 0.40 -5.16 16 7 C -0.26 -6.30 9.48 -15.06 -0.14 -6.44 16 8 H 0.13 3.30 7.62 -52.48 -0.40 2.90 16 9 N -0.83 -18.30 2.46 -59.91 -0.15 -18.45 16 10 C 0.13 2.70 3.58 -4.04 -0.01 2.69 16 11 C -0.13 -2.25 6.11 -27.88 -0.17 -2.42 16 12 C 0.49 7.97 8.33 36.00 0.30 8.27 16 13 O -0.52 -9.87 16.74 -18.75 -0.31 -10.19 16 14 O -0.52 -6.63 13.42 -39.27 -0.53 -7.15 16 15 S 2.55 56.36 5.58 -107.50 -0.60 55.76 16 16 O -0.97 -23.65 16.05 -57.17 -0.92 -24.57 16 17 O -1.00 -22.45 16.42 -57.17 -0.94 -23.39 16 18 C -0.66 -13.42 5.97 -39.58 -0.24 -13.66 16 19 C -0.03 -0.54 9.52 -39.58 -0.38 -0.91 16 20 C -0.15 -2.38 9.30 -39.58 -0.37 -2.75 16 21 C -0.02 -0.35 5.61 -104.63 -0.59 -0.93 16 22 C -0.12 -1.43 6.04 -91.77 -0.55 -1.98 16 23 C -0.18 -1.78 9.86 -26.70 -0.26 -2.04 16 24 C -0.17 -1.67 10.17 -26.70 -0.27 -1.94 16 25 C -0.14 -2.28 9.74 -39.58 -0.39 -2.67 16 26 C -0.02 -0.34 9.53 -39.59 -0.38 -0.72 16 27 H 0.28 6.59 8.31 -40.82 -0.34 6.25 16 28 H 0.07 1.54 3.05 -51.93 -0.16 1.38 16 29 H 0.08 1.45 7.70 -51.93 -0.40 1.05 16 30 H 0.12 1.93 8.02 -51.93 -0.42 1.51 16 31 H 0.12 2.11 8.14 -51.93 -0.42 1.69 16 32 H 0.40 3.20 9.10 45.56 0.41 3.62 16 33 H 0.13 2.22 7.72 -52.49 -0.41 1.81 16 34 H 0.12 1.61 6.02 -52.49 -0.32 1.29 16 35 H 0.11 1.21 8.14 -51.93 -0.42 0.78 16 36 H 0.10 1.01 6.18 -51.93 -0.32 0.69 16 37 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.12 1.65 8.06 -52.49 -0.42 1.23 16 41 H 0.14 2.59 7.52 -52.49 -0.39 2.20 16 LS Contribution 359.16 15.07 5.41 5.41 Total: -1.00 -30.85 359.16 -9.15 -39.99 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: -4.09 Total: 11.39 kcal Atomic # 6 Polarization: -20.31 SS G_CDS: -3.54 Total: -23.85 kcal Atomic # 7 Polarization: -38.89 SS G_CDS: 0.63 Total: -38.27 kcal Atomic # 8 Polarization: -62.60 SS G_CDS: -2.70 Total: -65.30 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -4.26 Total: 14.86 kcal Atomic # 16 Polarization: 56.36 SS G_CDS: -0.60 Total: 55.76 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.85 -9.15 -39.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608186593.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.117 kcal (2) G-P(sol) polarization free energy of solvation -30.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds