Wall clock time and date at job start Tue Mar 31 2020 22:04:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30819 * 1 3 3 Si 1.86804 * 119.99770 * 2 1 4 4 H 1.48503 * 109.46947 * 269.99440 * 3 2 1 5 5 H 1.48495 * 109.47417 * 29.99867 * 3 2 1 6 6 H 1.48512 * 109.46877 * 149.99644 * 3 2 1 7 7 C 1.39946 * 120.00095 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99963 * 197.69800 * 7 2 1 9 9 C 1.41394 * 119.99659 * 17.71049 * 7 2 1 10 10 C 1.40720 * 120.23998 * 204.31913 * 9 7 2 11 11 C 1.37618 * 119.74118 * 180.29259 * 10 9 7 12 12 C 1.38634 * 120.24962 * 359.47191 * 11 10 9 13 13 C 1.50702 * 119.74827 * 180.25768 * 12 11 10 14 14 N 1.46504 * 109.46922 * 270.25171 * 13 12 11 15 15 S 1.65598 * 119.99948 * 165.00159 * 14 13 12 16 16 O 1.42104 * 104.27667 * 181.06901 * 15 14 13 17 17 O 1.42102 * 104.27811 * 308.92506 * 15 14 13 18 18 C 1.81399 * 104.44979 * 64.99945 * 15 14 13 19 19 C 1.53001 * 109.47093 * 181.66732 * 18 15 14 20 20 C 1.50697 * 115.54936 * 294.03805 * 19 18 15 21 21 O 1.20835 * 119.99923 * 120.86101 * 20 19 18 22 22 O 1.34226 * 120.00082 * 300.86117 * 20 19 18 23 23 C 1.53002 * 117.49798 * 148.36845 * 19 18 15 24 24 C 1.53000 * 117.50072 * 79.70767 * 19 18 15 25 25 C 1.38636 * 120.50027 * 0.51150 * 12 11 10 26 26 C 1.37615 * 120.24717 * 359.76743 * 25 12 11 27 27 H 0.97006 * 120.00304 * 0.02562 * 1 2 3 28 28 H 1.08001 * 120.12625 * 0.02562 * 10 9 7 29 29 H 1.07999 * 119.87349 * 179.71975 * 11 10 9 30 30 H 1.08995 * 109.47179 * 30.24909 * 13 12 11 31 31 H 1.08994 * 109.47155 * 150.25596 * 13 12 11 32 32 H 0.97003 * 119.99749 * 345.00115 * 14 13 12 33 33 H 1.09002 * 109.46879 * 301.66317 * 18 15 14 34 34 H 1.08997 * 109.47281 * 61.66804 * 18 15 14 35 35 H 0.96706 * 116.99903 * 180.02562 * 22 20 19 36 36 H 1.08998 * 117.49902 * 0.02562 * 23 19 18 37 37 H 1.08999 * 117.49522 * 145.02356 * 23 19 18 38 38 H 1.08995 * 117.50426 * 214.97975 * 24 19 18 39 39 H 1.09002 * 117.49510 * 359.97438 * 24 19 18 40 40 H 1.07998 * 119.87268 * 179.74919 * 25 12 11 41 41 H 1.08005 * 120.12667 * 179.97438 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 2.4897 2.0464 -1.4001 5 1 1.4396 2.6527 0.7000 6 1 3.5398 1.4402 0.7002 7 6 2.0079 -1.2120 0.0005 8 1 3.0496 -1.2339 0.2849 9 6 1.3512 -2.4076 -0.3714 10 6 1.8268 -3.6498 0.0878 11 6 1.1832 -4.8076 -0.2855 12 6 0.0641 -4.7524 -1.1018 13 6 -0.6354 -6.0269 -1.4989 14 7 -0.0491 -6.5393 -2.7399 15 16 -0.3499 -8.0965 -3.2165 16 8 0.3878 -8.2426 -4.4222 17 8 -0.0433 -8.8791 -2.0707 18 6 -2.1322 -8.1307 -3.5525 19 6 -2.5460 -9.5442 -3.9668 20 6 -1.9789 -10.0301 -5.2757 21 8 -1.2970 -11.0272 -5.3057 22 8 -2.2313 -9.3553 -6.4083 23 6 -3.9561 -10.0055 -3.5931 24 6 -2.7427 -10.5771 -2.8553 25 6 -0.4135 -3.5341 -1.5598 26 6 0.2175 -2.3641 -1.2038 27 1 -0.4851 0.8401 -0.0004 28 1 2.6960 -3.6947 0.7272 29 1 1.5491 -5.7624 0.0620 30 1 -0.5172 -6.7677 -0.7082 31 1 -1.6955 -5.8265 -1.6537 32 1 0.5153 -5.9665 -3.2823 33 1 -2.6769 -7.8413 -2.6538 34 1 -2.3635 -7.4337 -4.3579 35 1 -1.8462 -9.7057 -7.2232 36 1 -4.5891 -9.3019 -3.0525 37 1 -4.4734 -10.6609 -4.2938 38 1 -2.4624 -11.6080 -3.0709 39 1 -2.5769 -10.2496 -1.8290 40 1 -1.2838 -3.5033 -2.1985 41 1 -0.1559 -1.4161 -1.5621 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608188482.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:56 Heat of formation + Delta-G solvation = -121.556596 kcal Electronic energy + Delta-G solvation = -26545.637359 eV Core-core repulsion = 22518.083509 eV Total energy + Delta-G solvation = -4027.553850 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.90483 -37.91862 -37.82974 -37.02933 -36.36429 -35.89200 -35.12070 -33.42652 -30.11854 -29.84046 -29.35611 -26.61638 -25.26865 -23.63042 -23.04299 -21.11508 -20.62090 -20.16435 -19.36005 -18.29836 -17.61915 -17.43866 -17.39824 -16.42908 -16.13558 -15.83250 -15.39874 -14.90648 -14.80121 -14.50039 -14.15306 -14.02102 -13.69259 -13.30527 -12.96721 -12.69680 -12.49167 -12.20610 -12.12090 -12.04234 -12.03694 -11.98010 -11.93500 -11.81697 -11.61587 -11.21702 -11.19951 -11.05412 -10.90028 -10.67978 -10.50313 -10.35218 -9.71629 -9.53938 -9.28795 -9.15240 -7.59436 -7.46607 -6.88878 -4.47920 0.18637 1.68306 2.44723 2.48463 2.85522 2.97240 3.01292 3.04257 3.06662 3.18510 3.62382 3.84087 3.94236 4.03714 4.23466 4.28886 4.49885 4.67343 4.86051 5.01556 5.10950 5.33850 5.38479 5.42940 5.56058 5.59029 5.66375 6.02156 6.11501 6.19655 6.28781 6.33407 6.85262 6.95936 7.12878 7.24029 7.26365 7.49502 7.50063 7.73668 7.94029 7.98198 8.17992 8.51953 8.77171 8.84737 10.04968 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.027356 B = 0.002265 C = 0.002250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.299909 B =12356.494972 C =12443.669001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.075 3.925 3 Si 0.910 3.090 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.261 1.261 7 C -0.457 4.457 8 H 0.080 0.920 9 C 0.116 3.884 10 C -0.229 4.229 11 C -0.068 4.068 12 C -0.236 4.236 13 C 0.177 3.823 14 N -1.107 6.107 15 S 2.601 3.399 16 O -0.960 6.960 17 O -0.948 6.948 18 C -0.597 4.597 19 C -0.143 4.143 20 C 0.508 3.492 21 O -0.496 6.496 22 O -0.503 6.503 23 C -0.131 4.131 24 C -0.141 4.141 25 C -0.084 4.084 26 C -0.170 4.170 27 H 0.282 0.718 28 H 0.093 0.907 29 H 0.091 0.909 30 H 0.071 0.929 31 H 0.054 0.946 32 H 0.420 0.580 33 H 0.147 0.853 34 H 0.147 0.853 35 H 0.416 0.584 36 H 0.117 0.883 37 H 0.107 0.893 38 H 0.118 0.882 39 H 0.125 0.875 40 H 0.089 0.911 41 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.927 -13.138 -7.795 18.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.143 4.143 3 Si 0.734 3.266 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.185 1.185 7 C -0.486 4.486 8 H 0.098 0.902 9 C 0.113 3.887 10 C -0.248 4.248 11 C -0.088 4.088 12 C -0.240 4.240 13 C 0.053 3.947 14 N -0.869 5.869 15 S 2.693 3.307 16 O -0.950 6.950 17 O -0.938 6.938 18 C -0.724 4.724 19 C -0.146 4.146 20 C 0.348 3.652 21 O -0.382 6.382 22 O -0.315 6.315 23 C -0.169 4.169 24 C -0.178 4.178 25 C -0.103 4.103 26 C -0.189 4.189 27 H 0.093 0.907 28 H 0.112 0.888 29 H 0.109 0.891 30 H 0.089 0.911 31 H 0.072 0.928 32 H 0.255 0.745 33 H 0.165 0.835 34 H 0.165 0.835 35 H 0.276 0.724 36 H 0.136 0.864 37 H 0.126 0.874 38 H 0.136 0.864 39 H 0.143 0.857 40 H 0.107 0.893 41 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -9.618 -13.931 -7.390 18.471 hybrid contribution 0.137 1.347 -0.858 1.602 sum -9.481 -12.585 -8.247 17.784 Atomic orbital electron populations 1.69817 1.07641 1.29445 1.34335 1.25954 0.94765 1.01496 0.92107 0.86281 0.80532 0.80348 0.79426 1.19178 1.20236 1.18522 1.19684 0.98204 0.91246 1.39473 0.90230 1.17684 0.90927 0.92069 0.88027 1.20995 1.03927 0.92799 1.07118 1.20449 0.94756 0.96655 0.96899 1.18828 1.02444 0.92147 1.10568 1.19995 0.95094 0.95602 0.84050 1.55873 1.64043 1.32903 1.34053 1.05262 0.76823 0.74088 0.74564 1.93593 1.67824 1.85372 1.48243 1.93591 1.81513 1.68793 1.49860 1.30333 1.29552 1.00178 1.12302 1.20334 1.06252 0.95110 0.92854 1.22007 0.77184 0.80908 0.85056 1.90764 1.35175 1.25423 1.86875 1.84464 1.71775 1.56727 1.18544 1.23219 0.88586 1.02725 1.02415 1.23494 0.99562 0.98404 0.96322 1.20538 0.98259 0.92590 0.98931 1.21314 0.99421 0.96807 1.01361 0.90698 0.88830 0.89102 0.91056 0.92756 0.74486 0.83515 0.83477 0.72410 0.86430 0.87415 0.86366 0.85687 0.89330 0.86327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.35 10.94 55.55 0.61 -18.75 16 2 C 0.08 1.81 5.14 -17.34 -0.09 1.72 16 3 Si 0.91 17.89 29.59 -169.99 -5.03 12.86 16 4 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 5 H -0.28 -5.33 7.11 56.52 0.40 -4.93 16 6 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 7 C -0.46 -11.62 9.06 -37.74 -0.34 -11.96 16 8 H 0.08 1.96 7.91 -52.49 -0.41 1.54 16 9 C 0.12 2.94 5.58 -106.83 -0.60 2.34 16 10 C -0.23 -5.38 9.80 -38.87 -0.38 -5.76 16 11 C -0.07 -1.46 9.67 -39.66 -0.38 -1.84 16 12 C -0.24 -4.66 5.30 -104.33 -0.55 -5.21 16 13 C 0.18 2.70 6.24 -5.19 -0.03 2.67 16 14 N -1.11 -15.83 5.88 -11.66 -0.07 -15.90 16 15 S 2.60 36.17 5.26 -107.50 -0.57 35.60 16 16 O -0.96 -16.19 17.53 -57.54 -1.01 -17.20 16 17 O -0.95 -15.64 17.50 -57.54 -1.01 -16.65 16 18 C -0.60 -5.66 5.93 37.16 0.22 -5.44 16 19 C -0.14 -1.42 2.01 -155.66 -0.31 -1.73 16 20 C 0.51 6.00 6.83 36.00 0.25 6.25 16 21 O -0.50 -7.22 17.31 -18.76 -0.32 -7.55 16 22 O -0.50 -4.65 13.42 -39.25 -0.53 -5.18 16 23 C -0.13 -0.87 9.92 -26.69 -0.26 -1.14 16 24 C -0.14 -1.21 9.77 -26.69 -0.26 -1.47 16 25 C -0.08 -1.77 9.67 -39.66 -0.38 -2.15 16 26 C -0.17 -4.12 8.70 -38.88 -0.34 -4.46 16 27 H 0.28 6.28 8.30 -40.82 -0.34 5.94 16 28 H 0.09 2.10 8.06 -52.49 -0.42 1.67 16 29 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 30 H 0.07 1.06 7.63 -51.93 -0.40 0.66 16 31 H 0.05 0.67 8.08 -51.93 -0.42 0.25 16 32 H 0.42 6.07 8.61 -34.47 -0.30 5.77 16 33 H 0.15 0.99 8.09 -51.92 -0.42 0.57 16 34 H 0.15 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.42 2.08 9.10 45.56 0.41 2.50 16 36 H 0.12 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.11 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.12 1.01 7.89 -51.93 -0.41 0.60 16 39 H 0.12 0.96 8.14 -51.93 -0.42 0.53 16 40 H 0.09 1.63 8.06 -52.49 -0.42 1.20 16 41 H 0.12 2.98 6.15 -52.48 -0.32 2.66 16 LS Contribution 370.84 15.07 5.59 5.59 Total: -1.00 -33.31 370.84 -10.16 -43.47 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: -4.36 Total: 11.89 kcal Atomic # 6 Polarization: -24.72 SS G_CDS: -3.47 Total: -28.19 kcal Atomic # 7 Polarization: -35.19 SS G_CDS: 0.54 Total: -34.65 kcal Atomic # 8 Polarization: -43.71 SS G_CDS: -2.87 Total: -46.57 kcal Atomic # 14 Polarization: 17.89 SS G_CDS: -5.03 Total: 12.86 kcal Atomic # 16 Polarization: 36.17 SS G_CDS: -0.57 Total: 35.60 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.31 -10.16 -43.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608188482.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.087 kcal (2) G-P(sol) polarization free energy of solvation -33.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds