Wall clock time and date at job start Tue Mar 31 2020 22:04:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30819 * 1 3 3 Si 1.86804 * 119.99770 * 2 1 4 4 H 1.48503 * 109.46947 * 269.99440 * 3 2 1 5 5 H 1.48495 * 109.47417 * 29.99867 * 3 2 1 6 6 H 1.48512 * 109.46877 * 149.99644 * 3 2 1 7 7 C 1.39946 * 120.00095 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99963 * 197.69800 * 7 2 1 9 9 C 1.41394 * 119.99659 * 17.71049 * 7 2 1 10 10 C 1.40720 * 120.23998 * 204.31913 * 9 7 2 11 11 C 1.37618 * 119.74118 * 180.29259 * 10 9 7 12 12 C 1.38634 * 120.24962 * 359.47191 * 11 10 9 13 13 C 1.50702 * 119.74827 * 180.25768 * 12 11 10 14 14 N 1.46504 * 109.46922 * 270.25171 * 13 12 11 15 15 S 1.65598 * 119.99948 * 165.00159 * 14 13 12 16 16 O 1.42104 * 104.27667 * 181.06901 * 15 14 13 17 17 O 1.42102 * 104.27811 * 308.92506 * 15 14 13 18 18 C 1.81399 * 104.44979 * 64.99945 * 15 14 13 19 19 C 1.53001 * 109.47093 * 181.66732 * 18 15 14 20 20 C 1.50697 * 115.54936 * 294.03805 * 19 18 15 21 21 O 1.20835 * 119.99923 * 120.86101 * 20 19 18 22 22 O 1.34226 * 120.00082 * 300.86117 * 20 19 18 23 23 C 1.53002 * 117.49798 * 148.36845 * 19 18 15 24 24 C 1.53000 * 117.50072 * 79.70767 * 19 18 15 25 25 C 1.38636 * 120.50027 * 0.51150 * 12 11 10 26 26 C 1.37615 * 120.24717 * 359.76743 * 25 12 11 27 27 H 0.97006 * 120.00304 * 0.02562 * 1 2 3 28 28 H 1.08001 * 120.12625 * 0.02562 * 10 9 7 29 29 H 1.07999 * 119.87349 * 179.71975 * 11 10 9 30 30 H 1.08995 * 109.47179 * 30.24909 * 13 12 11 31 31 H 1.08994 * 109.47155 * 150.25596 * 13 12 11 32 32 H 0.97003 * 119.99749 * 345.00115 * 14 13 12 33 33 H 1.09002 * 109.46879 * 301.66317 * 18 15 14 34 34 H 1.08997 * 109.47281 * 61.66804 * 18 15 14 35 35 H 0.96706 * 116.99903 * 180.02562 * 22 20 19 36 36 H 1.08998 * 117.49902 * 0.02562 * 23 19 18 37 37 H 1.08999 * 117.49522 * 145.02356 * 23 19 18 38 38 H 1.08995 * 117.50426 * 214.97975 * 24 19 18 39 39 H 1.09002 * 117.49510 * 359.97438 * 24 19 18 40 40 H 1.07998 * 119.87268 * 179.74919 * 25 12 11 41 41 H 1.08005 * 120.12667 * 179.97438 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 2.4897 2.0464 -1.4001 5 1 1.4396 2.6527 0.7000 6 1 3.5398 1.4402 0.7002 7 6 2.0079 -1.2120 0.0005 8 1 3.0496 -1.2339 0.2849 9 6 1.3512 -2.4076 -0.3714 10 6 1.8268 -3.6498 0.0878 11 6 1.1832 -4.8076 -0.2855 12 6 0.0641 -4.7524 -1.1018 13 6 -0.6354 -6.0269 -1.4989 14 7 -0.0491 -6.5393 -2.7399 15 16 -0.3499 -8.0965 -3.2165 16 8 0.3878 -8.2426 -4.4222 17 8 -0.0433 -8.8791 -2.0707 18 6 -2.1322 -8.1307 -3.5525 19 6 -2.5460 -9.5442 -3.9668 20 6 -1.9789 -10.0301 -5.2757 21 8 -1.2970 -11.0272 -5.3057 22 8 -2.2313 -9.3553 -6.4083 23 6 -3.9561 -10.0055 -3.5931 24 6 -2.7427 -10.5771 -2.8553 25 6 -0.4135 -3.5341 -1.5598 26 6 0.2175 -2.3641 -1.2038 27 1 -0.4851 0.8401 -0.0004 28 1 2.6960 -3.6947 0.7272 29 1 1.5491 -5.7624 0.0620 30 1 -0.5172 -6.7677 -0.7082 31 1 -1.6955 -5.8265 -1.6537 32 1 0.5153 -5.9665 -3.2823 33 1 -2.6769 -7.8413 -2.6538 34 1 -2.3635 -7.4337 -4.3579 35 1 -1.8462 -9.7057 -7.2232 36 1 -4.5891 -9.3019 -3.0525 37 1 -4.4734 -10.6609 -4.2938 38 1 -2.4624 -11.6080 -3.0709 39 1 -2.5769 -10.2496 -1.8290 40 1 -1.2838 -3.5033 -2.1985 41 1 -0.1559 -1.4161 -1.5621 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608188482.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:55 Heat of formation + Delta-G solvation = -145.808228 kcal Electronic energy + Delta-G solvation = -26546.688989 eV Core-core repulsion = 22518.083509 eV Total energy + Delta-G solvation = -4028.605479 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.70728 -39.58554 -38.52075 -38.18407 -37.20611 -37.05876 -36.55130 -35.03892 -31.76989 -31.10743 -30.57460 -28.20283 -26.06201 -25.17949 -23.56672 -22.87136 -21.85056 -21.37591 -20.38612 -19.22191 -19.14545 -18.71335 -18.26125 -17.60789 -17.11571 -16.94283 -16.79690 -16.15342 -15.71318 -15.62270 -15.50583 -15.22905 -15.13954 -14.32303 -14.03836 -13.96919 -13.79397 -13.64889 -13.54622 -13.32132 -13.25118 -13.11665 -12.82896 -12.81171 -12.68503 -12.66117 -12.56545 -12.39710 -12.05738 -11.93607 -11.62318 -11.42431 -11.27464 -11.15095 -11.01903 -10.28783 -9.35577 -9.24609 -8.65174 -6.34729 -0.84173 0.85462 0.89821 1.16960 1.38786 1.47289 1.51026 1.77985 1.82782 2.20667 2.43565 2.69594 2.76127 3.15542 3.20694 3.41062 3.71892 3.75599 4.00177 4.05535 4.15665 4.37071 4.41395 4.56480 4.66145 4.68455 4.70896 4.76928 4.90330 5.05722 5.08845 5.11181 5.16571 5.39149 5.40638 5.47644 5.71789 5.96751 6.08410 6.11237 6.23973 6.40571 6.71248 6.77875 6.94362 7.03836 8.31242 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.027356 B = 0.002265 C = 0.002250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.299909 B =12356.494972 C =12443.669001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.818 5.818 2 C 0.038 3.962 3 Si 0.980 3.020 4 H -0.262 1.262 5 H -0.266 1.266 6 H -0.262 1.262 7 C -0.500 4.500 8 H 0.071 0.929 9 C 0.082 3.918 10 C -0.249 4.249 11 C -0.078 4.078 12 C -0.219 4.219 13 C 0.176 3.824 14 N -1.111 6.111 15 S 2.597 3.403 16 O -0.999 6.999 17 O -0.983 6.983 18 C -0.567 4.567 19 C -0.175 4.175 20 C 0.503 3.497 21 O -0.537 6.537 22 O -0.499 6.499 23 C -0.096 4.096 24 C -0.156 4.156 25 C -0.081 4.081 26 C -0.193 4.193 27 H 0.289 0.711 28 H 0.090 0.910 29 H 0.109 0.891 30 H 0.078 0.922 31 H 0.098 0.902 32 H 0.418 0.582 33 H 0.187 0.813 34 H 0.171 0.829 35 H 0.431 0.569 36 H 0.149 0.851 37 H 0.119 0.881 38 H 0.108 0.892 39 H 0.134 0.866 40 H 0.122 0.878 41 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.849 -13.557 -8.426 20.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C -0.178 4.178 3 Si 0.801 3.199 4 H -0.187 1.187 5 H -0.190 1.190 6 H -0.186 1.186 7 C -0.530 4.530 8 H 0.089 0.911 9 C 0.080 3.920 10 C -0.269 4.269 11 C -0.097 4.097 12 C -0.222 4.222 13 C 0.052 3.948 14 N -0.871 5.871 15 S 2.694 3.306 16 O -0.990 6.990 17 O -0.973 6.973 18 C -0.698 4.698 19 C -0.178 4.178 20 C 0.345 3.655 21 O -0.427 6.427 22 O -0.312 6.312 23 C -0.134 4.134 24 C -0.193 4.193 25 C -0.100 4.100 26 C -0.213 4.213 27 H 0.100 0.900 28 H 0.109 0.891 29 H 0.127 0.873 30 H 0.096 0.904 31 H 0.116 0.884 32 H 0.253 0.747 33 H 0.204 0.796 34 H 0.189 0.811 35 H 0.294 0.706 36 H 0.166 0.834 37 H 0.137 0.863 38 H 0.126 0.874 39 H 0.152 0.848 40 H 0.140 0.860 41 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -12.485 -14.336 -8.017 20.632 hybrid contribution 0.921 1.223 -0.763 1.711 sum -11.564 -13.113 -8.780 19.564 Atomic orbital electron populations 1.69848 1.08778 1.30622 1.35155 1.26695 0.95540 1.04291 0.91254 0.85239 0.79043 0.76134 0.79512 1.18685 1.19045 1.18619 1.19864 0.98230 0.92734 1.42146 0.91105 1.18013 0.92070 0.92792 0.89124 1.21158 1.04512 0.93398 1.07817 1.20762 0.95236 0.96564 0.97118 1.19287 1.01009 0.93911 1.07944 1.20097 0.96827 0.93249 0.84665 1.55621 1.64852 1.32749 1.33844 1.05124 0.79014 0.73156 0.73297 1.93546 1.70685 1.85545 1.49188 1.93546 1.83529 1.69343 1.50903 1.30056 1.23785 1.00899 1.15091 1.20551 1.09434 0.95453 0.92346 1.22530 0.76367 0.80381 0.86189 1.90746 1.37042 1.27349 1.87567 1.84432 1.71501 1.56312 1.18953 1.23464 0.86991 1.01944 1.01000 1.23631 1.01398 0.97793 0.96478 1.20871 0.98734 0.91841 0.98549 1.21325 1.00060 0.97567 1.02348 0.89989 0.89147 0.87315 0.90418 0.88415 0.74734 0.79556 0.81111 0.70627 0.83356 0.86294 0.87391 0.84764 0.85963 0.87909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.19 10.94 21.83 0.24 -40.95 16 2 C 0.04 1.86 5.14 85.26 0.44 2.30 16 3 Si 0.98 37.43 29.59 68.60 2.03 39.47 16 4 H -0.26 -9.72 7.11 99.48 0.71 -9.02 16 5 H -0.27 -9.57 7.11 99.48 0.71 -8.87 16 6 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 7 C -0.50 -26.69 9.06 23.46 0.21 -26.48 16 8 H 0.07 3.71 7.91 -2.91 -0.02 3.69 16 9 C 0.08 4.35 5.58 -21.29 -0.12 4.23 16 10 C -0.25 -12.09 9.80 22.73 0.22 -11.87 16 11 C -0.08 -3.27 9.67 22.22 0.21 -3.06 16 12 C -0.22 -8.15 5.30 -19.67 -0.10 -8.25 16 13 C 0.18 4.69 6.24 85.63 0.53 5.22 16 14 N -1.11 -28.80 5.88 -190.79 -1.12 -29.92 16 15 S 2.60 66.84 5.26 -56.49 -0.30 66.55 16 16 O -1.00 -33.16 17.53 -127.65 -2.24 -35.40 16 17 O -0.98 -31.15 17.50 -127.65 -2.23 -33.38 16 18 C -0.57 -8.11 5.93 71.98 0.43 -7.69 16 19 C -0.17 -2.87 2.01 -52.93 -0.11 -2.98 16 20 C 0.50 10.99 6.83 71.24 0.49 11.48 16 21 O -0.54 -15.56 17.31 21.94 0.38 -15.18 16 22 O -0.50 -8.12 13.42 -51.38 -0.69 -8.81 16 23 C -0.10 -0.81 9.92 30.62 0.30 -0.51 16 24 C -0.16 -2.23 9.77 30.62 0.30 -1.93 16 25 C -0.08 -3.27 9.67 22.22 0.21 -3.06 16 26 C -0.19 -9.54 8.70 22.73 0.20 -9.34 16 27 H 0.29 13.08 8.30 -92.70 -0.77 12.31 16 28 H 0.09 4.26 8.06 -2.91 -0.02 4.24 16 29 H 0.11 4.11 8.06 -2.91 -0.02 4.08 16 30 H 0.08 2.02 7.63 -2.39 -0.02 2.00 16 31 H 0.10 1.82 8.08 -2.39 -0.02 1.80 16 32 H 0.42 11.35 8.61 -96.74 -0.83 10.52 16 33 H 0.19 1.24 8.09 -2.39 -0.02 1.22 16 34 H 0.17 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.43 3.69 9.10 -74.05 -0.67 3.01 16 36 H 0.15 0.39 8.14 -2.39 -0.02 0.37 16 37 H 0.12 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.11 1.74 7.89 -2.39 -0.02 1.72 16 39 H 0.13 1.62 8.14 -2.39 -0.02 1.61 16 40 H 0.12 4.06 8.06 -2.91 -0.02 4.03 16 41 H 0.10 5.32 6.15 -2.91 -0.02 5.31 16 Total: -1.00 -77.09 370.84 -1.13 -78.22 By element: Atomic # 1 Polarization: 31.75 SS G_CDS: -0.42 Total: 31.33 kcal Atomic # 6 Polarization: -55.15 SS G_CDS: 3.22 Total: -51.93 kcal Atomic # 7 Polarization: -69.99 SS G_CDS: -0.88 Total: -70.87 kcal Atomic # 8 Polarization: -87.98 SS G_CDS: -4.78 Total: -92.76 kcal Atomic # 14 Polarization: 37.43 SS G_CDS: 2.03 Total: 39.47 kcal Atomic # 16 Polarization: 66.84 SS G_CDS: -0.30 Total: 66.55 kcal Total: -77.09 -1.13 -78.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608188482.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.589 kcal (2) G-P(sol) polarization free energy of solvation -77.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds