Wall clock time and date at job start Tue Mar 31 2020 22:24:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30644 * 1 3 3 Si 1.86804 * 120.00109 * 2 1 4 4 H 1.48496 * 109.46868 * 85.13511 * 3 2 1 5 5 H 1.48502 * 109.47113 * 205.13681 * 3 2 1 6 6 H 1.48499 * 109.47040 * 325.13615 * 3 2 1 7 7 C 1.40309 * 119.99972 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00359 * 189.92293 * 7 2 1 9 9 C 1.40544 * 119.99752 * 9.92993 * 7 2 1 10 10 C 1.44182 * 123.71478 * 23.31327 * 9 7 2 11 11 C 1.32772 * 114.42738 * 179.76392 * 10 9 7 12 12 S 1.75468 * 111.36100 * 0.49277 * 11 10 9 13 13 C 1.39550 * 123.71212 * 203.61298 * 9 7 2 14 14 C 1.46237 * 125.22469 * 0.02562 * 13 9 7 15 15 O 1.21756 * 120.00401 * 359.97438 * 14 13 9 16 16 N 1.34779 * 119.99485 * 180.02562 * 14 13 9 17 17 C 1.46502 * 119.99832 * 179.97438 * 16 14 13 18 18 C 1.52997 * 109.47055 * 179.97438 * 17 16 14 19 19 H 1.09000 * 109.47617 * 305.00282 * 18 17 16 20 20 C 1.50705 * 109.47105 * 65.00276 * 18 17 16 21 21 O 1.20831 * 119.99544 * 359.97438 * 20 18 17 22 22 O 1.34227 * 120.00406 * 179.97438 * 20 18 17 23 23 C 1.53002 * 109.47176 * 184.99747 * 18 17 16 24 24 H 1.08994 * 110.80381 * 303.63110 * 23 18 17 25 25 C 1.54816 * 110.90742 * 180.02562 * 23 18 17 26 26 C 1.54100 * 104.18480 * 220.92514 * 25 23 18 27 27 O 1.43746 * 107.29740 * 357.96598 * 26 25 23 28 28 C 1.44382 * 106.97109 * 26.51569 * 27 26 25 29 29 H 0.97001 * 119.99466 * 359.97438 * 1 2 3 30 30 H 1.07997 * 122.78891 * 359.97438 * 10 9 7 31 31 H 1.07999 * 124.31756 * 180.20922 * 11 10 9 32 32 H 0.96996 * 120.00421 * 359.97438 * 16 14 13 33 33 H 1.08995 * 109.47028 * 299.99414 * 17 16 14 34 34 H 1.08998 * 109.47290 * 59.99563 * 17 16 14 35 35 H 0.96697 * 117.00494 * 179.97438 * 22 20 18 36 36 H 1.08994 * 110.48794 * 339.59867 * 25 23 18 37 37 H 1.08998 * 110.48857 * 102.11614 * 25 23 18 38 38 H 1.08998 * 109.88350 * 117.39479 * 26 25 23 39 39 H 1.09000 * 109.87602 * 238.39523 * 26 25 23 40 40 H 1.09000 * 110.61637 * 201.43552 * 28 27 26 41 41 H 1.09003 * 110.61818 * 78.44036 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2405 1.6178 0.0000 4 1 2.3851 2.1057 1.3950 5 1 3.5857 1.4127 -0.5947 6 1 1.4931 2.6208 -0.8003 7 6 2.0080 -1.2151 -0.0005 8 1 3.0758 -1.2223 0.1606 9 6 1.3210 -2.4230 -0.2110 10 6 0.0540 -2.5148 -0.8930 11 6 -0.4276 -3.7480 -0.9931 12 16 0.6417 -4.9152 -0.2360 13 6 1.7872 -3.6649 0.2225 14 6 3.0369 -3.8905 0.9476 15 8 3.7625 -2.9507 1.2173 16 7 3.3860 -5.1389 1.3164 17 6 4.6383 -5.3651 2.0424 18 6 4.7934 -6.8580 2.3388 19 1 3.9120 -7.2165 2.8705 20 6 4.9411 -7.6146 1.0438 21 8 4.9235 -7.0206 -0.0082 22 8 5.0921 -8.9483 1.0591 23 6 6.0360 -7.0798 3.2035 24 1 6.9227 -6.6709 2.7192 25 6 6.2253 -8.5827 3.5234 26 6 6.6568 -8.6024 5.0027 27 8 6.7472 -7.2360 5.4398 28 6 5.8438 -6.4691 4.6150 29 1 -0.4849 0.8401 0.0004 30 1 -0.4590 -1.6524 -1.2925 31 1 -1.3609 -4.0000 -1.4747 32 1 2.8081 -5.8877 1.1013 33 1 5.4769 -5.0260 1.4344 34 1 4.6205 -4.8088 2.9796 35 1 5.1827 -9.3897 0.2036 36 1 5.2871 -9.1218 3.3925 37 1 7.0026 -9.0123 2.8915 38 1 5.9145 -9.1338 5.5983 39 1 7.6270 -9.0897 5.0992 40 1 6.1221 -5.4152 4.6184 41 1 4.8149 -6.5965 4.9515 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608189183.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:34 Heat of formation + Delta-G solvation = -158.938463 kcal Electronic energy + Delta-G solvation = -27038.478870 eV Core-core repulsion = 23009.304021 eV Total energy + Delta-G solvation = -4029.174849 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.86406 -39.35369 -38.25946 -36.41446 -35.97425 -35.04935 -33.04067 -32.86073 -30.42684 -29.02838 -28.14573 -26.39028 -24.69932 -22.67369 -22.31677 -21.57495 -20.48100 -19.88719 -18.74745 -18.34830 -17.53990 -17.11860 -16.56533 -16.25593 -15.71468 -15.46287 -15.31329 -15.10108 -14.63135 -14.23955 -14.10250 -13.84673 -13.65125 -13.14433 -12.97503 -12.52518 -12.44617 -12.04823 -12.01731 -11.84281 -11.73711 -11.60282 -11.45395 -11.40684 -11.22666 -11.07328 -10.97895 -10.91401 -10.44151 -10.41156 -10.12313 -9.91949 -9.63124 -9.23568 -8.44000 -8.24240 -7.47161 -7.12166 -7.03024 -4.50853 2.10812 2.17894 2.83764 2.97106 3.00732 3.09641 3.14498 3.60193 3.65836 3.81807 3.87471 3.99324 4.13632 4.43953 4.47211 4.61249 4.73967 4.84566 4.90008 5.03785 5.18462 5.26420 5.28963 5.49516 5.55314 5.56657 5.73601 5.81363 5.86969 6.01677 6.06402 6.38526 6.59867 6.66621 6.85451 7.18289 7.21646 7.27313 7.48978 7.71974 7.80197 8.37687 8.44876 8.61823 8.79402 9.60077 9.88062 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.014746 B = 0.003114 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1898.339077 B = 8988.379561 C =10228.719118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.779 5.779 2 C 0.067 3.933 3 Si 0.925 3.075 4 H -0.265 1.265 5 H -0.255 1.255 6 H -0.274 1.274 7 C -0.377 4.377 8 H 0.112 0.888 9 C 0.141 3.859 10 C -0.099 4.099 11 C -0.206 4.206 12 S -0.054 6.054 13 C -0.428 4.428 14 C 0.604 3.396 15 O -0.564 6.564 16 N -0.745 5.745 17 C 0.142 3.858 18 C -0.081 4.081 19 H 0.116 0.884 20 C 0.475 3.525 21 O -0.487 6.487 22 O -0.517 6.517 23 C -0.112 4.112 24 H 0.096 0.904 25 C -0.146 4.146 26 C 0.045 3.955 27 O -0.377 6.377 28 C 0.053 3.947 29 H 0.287 0.713 30 H 0.146 0.854 31 H 0.137 0.863 32 H 0.388 0.612 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.407 0.593 36 H 0.088 0.912 37 H 0.080 0.920 38 H 0.059 0.941 39 H 0.082 0.918 40 H 0.102 0.898 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.738 -14.337 5.110 16.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.403 5.403 2 C -0.154 4.154 3 Si 0.749 3.251 4 H -0.190 1.190 5 H -0.178 1.178 6 H -0.199 1.199 7 C -0.408 4.408 8 H 0.129 0.871 9 C 0.129 3.871 10 C -0.131 4.131 11 C -0.340 4.340 12 S 0.201 5.799 13 C -0.546 4.546 14 C 0.401 3.599 15 O -0.447 6.447 16 N -0.398 5.398 17 C 0.017 3.983 18 C -0.101 4.101 19 H 0.134 0.866 20 C 0.315 3.685 21 O -0.372 6.372 22 O -0.330 6.330 23 C -0.131 4.131 24 H 0.114 0.886 25 C -0.184 4.184 26 C -0.032 4.032 27 O -0.296 6.296 28 C -0.024 4.024 29 H 0.099 0.901 30 H 0.163 0.837 31 H 0.155 0.845 32 H 0.221 0.779 33 H 0.088 0.912 34 H 0.094 0.906 35 H 0.266 0.734 36 H 0.106 0.894 37 H 0.099 0.901 38 H 0.077 0.923 39 H 0.100 0.900 40 H 0.120 0.880 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 7.091 -14.601 5.744 17.219 hybrid contribution -0.312 1.263 -1.154 1.739 sum 6.779 -13.339 4.590 15.651 Atomic orbital electron populations 1.69677 1.08081 1.30300 1.32260 1.26383 0.94936 1.02585 0.91531 0.85991 0.80753 0.78856 0.79538 1.18997 1.17800 1.19903 1.20044 0.97783 0.88782 1.34171 0.87053 1.17927 0.89489 0.91803 0.87834 1.21735 0.96394 0.96057 0.98936 1.24937 1.03372 0.96918 1.08763 1.82680 1.18326 1.14241 1.64655 1.22563 1.05410 0.95482 1.31186 1.16771 0.84490 0.80977 0.77616 1.90649 1.53936 1.41652 1.58503 1.45679 1.22642 1.09521 1.61961 1.20993 0.89461 0.90147 0.97653 1.21409 1.00959 0.95945 0.91752 0.86626 1.23305 0.72787 0.80553 0.91867 1.90849 1.44030 1.69143 1.33165 1.84559 1.84933 1.22516 1.40969 1.22660 0.97123 0.96954 0.96400 0.88573 1.23029 1.03629 0.95475 0.96222 1.23186 1.01641 0.84431 0.93942 1.88896 1.63781 1.18694 1.58203 1.23677 0.94503 0.96992 0.87209 0.90141 0.83691 0.84522 0.77930 0.91169 0.90606 0.73442 0.89368 0.90130 0.92306 0.89955 0.88006 0.91362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.93 10.81 55.57 0.60 -18.33 16 2 C 0.07 1.65 5.39 -17.28 -0.09 1.56 16 3 Si 0.93 18.70 29.57 -169.99 -5.03 13.67 16 4 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 5 H -0.25 -5.23 7.11 56.52 0.40 -4.83 16 6 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 7 C -0.38 -10.29 8.51 -37.93 -0.32 -10.61 16 8 H 0.11 3.19 6.05 -52.49 -0.32 2.88 16 9 C 0.14 3.81 5.68 -106.21 -0.60 3.21 16 10 C -0.10 -2.44 9.05 -39.12 -0.35 -2.79 16 11 C -0.21 -4.55 11.07 28.86 0.32 -4.23 16 12 S -0.05 -1.18 22.25 -107.50 -2.39 -3.57 16 13 C -0.43 -11.04 6.51 -35.88 -0.23 -11.28 16 14 C 0.60 15.04 7.76 -13.05 -0.10 14.94 16 15 O -0.56 -15.51 14.45 5.14 0.07 -15.43 16 16 N -0.74 -14.55 4.80 -61.76 -0.30 -14.85 16 17 C 0.14 2.20 4.55 -4.04 -0.02 2.18 16 18 C -0.08 -0.90 1.79 -91.77 -0.16 -1.06 16 19 H 0.12 1.11 8.09 -51.93 -0.42 0.69 16 20 C 0.47 5.71 7.26 36.01 0.26 5.97 16 21 O -0.49 -8.05 16.05 -18.75 -0.30 -8.35 16 22 O -0.52 -4.28 11.10 -39.25 -0.44 -4.71 16 23 C -0.11 -1.04 2.65 -88.61 -0.23 -1.27 16 24 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 25 C -0.15 -1.12 5.09 -25.20 -0.13 -1.24 16 26 C 0.04 0.36 7.70 37.73 0.29 0.65 16 27 O -0.38 -4.10 11.52 -35.23 -0.41 -4.51 16 28 C 0.05 0.51 6.36 38.21 0.24 0.75 16 29 H 0.29 6.24 8.29 -40.82 -0.34 5.91 16 30 H 0.15 3.54 6.39 -52.49 -0.34 3.20 16 31 H 0.14 2.55 8.06 -52.49 -0.42 2.13 16 32 H 0.39 7.12 7.23 -40.82 -0.30 6.83 16 33 H 0.07 1.21 7.96 -51.93 -0.41 0.80 16 34 H 0.08 1.13 7.27 -51.93 -0.38 0.75 16 35 H 0.41 1.96 9.10 45.56 0.41 2.38 16 36 H 0.09 0.64 7.00 -51.93 -0.36 0.28 16 37 H 0.08 0.57 8.13 -51.93 -0.42 0.15 16 38 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.10 0.97 7.97 -51.93 -0.41 0.56 16 41 H 0.07 0.61 8.01 -51.93 -0.42 0.19 16 LS Contribution 355.20 15.07 5.35 5.35 Total: -1.00 -33.02 355.20 -8.15 -41.17 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: -4.18 Total: 12.79 kcal Atomic # 6 Polarization: -2.09 SS G_CDS: -1.14 Total: -3.23 kcal Atomic # 7 Polarization: -33.48 SS G_CDS: 0.30 Total: -33.17 kcal Atomic # 8 Polarization: -31.94 SS G_CDS: -1.07 Total: -33.01 kcal Atomic # 14 Polarization: 18.70 SS G_CDS: -5.03 Total: 13.67 kcal Atomic # 16 Polarization: -1.18 SS G_CDS: -2.39 Total: -3.57 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.02 -8.15 -41.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608189183.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.766 kcal (2) G-P(sol) polarization free energy of solvation -33.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds