Wall clock time and date at job start Tue Mar 31 2020 22:24:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30644 * 1 3 3 Si 1.86804 * 120.00109 * 2 1 4 4 H 1.48496 * 109.46868 * 85.13511 * 3 2 1 5 5 H 1.48502 * 109.47113 * 205.13681 * 3 2 1 6 6 H 1.48499 * 109.47040 * 325.13615 * 3 2 1 7 7 C 1.40309 * 119.99972 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00359 * 189.92293 * 7 2 1 9 9 C 1.40544 * 119.99752 * 9.92993 * 7 2 1 10 10 C 1.44182 * 123.71478 * 23.31327 * 9 7 2 11 11 C 1.32772 * 114.42738 * 179.76392 * 10 9 7 12 12 S 1.75468 * 111.36100 * 0.49277 * 11 10 9 13 13 C 1.39550 * 123.71212 * 203.61298 * 9 7 2 14 14 C 1.46237 * 125.22469 * 0.02562 * 13 9 7 15 15 O 1.21756 * 120.00401 * 359.97438 * 14 13 9 16 16 N 1.34779 * 119.99485 * 180.02562 * 14 13 9 17 17 C 1.46502 * 119.99832 * 179.97438 * 16 14 13 18 18 C 1.52997 * 109.47055 * 179.97438 * 17 16 14 19 19 H 1.09000 * 109.47617 * 305.00282 * 18 17 16 20 20 C 1.50705 * 109.47105 * 65.00276 * 18 17 16 21 21 O 1.20831 * 119.99544 * 359.97438 * 20 18 17 22 22 O 1.34227 * 120.00406 * 179.97438 * 20 18 17 23 23 C 1.53002 * 109.47176 * 184.99747 * 18 17 16 24 24 H 1.08994 * 110.80381 * 303.63110 * 23 18 17 25 25 C 1.54816 * 110.90742 * 180.02562 * 23 18 17 26 26 C 1.54100 * 104.18480 * 220.92514 * 25 23 18 27 27 O 1.43746 * 107.29740 * 357.96598 * 26 25 23 28 28 C 1.44382 * 106.97109 * 26.51569 * 27 26 25 29 29 H 0.97001 * 119.99466 * 359.97438 * 1 2 3 30 30 H 1.07997 * 122.78891 * 359.97438 * 10 9 7 31 31 H 1.07999 * 124.31756 * 180.20922 * 11 10 9 32 32 H 0.96996 * 120.00421 * 359.97438 * 16 14 13 33 33 H 1.08995 * 109.47028 * 299.99414 * 17 16 14 34 34 H 1.08998 * 109.47290 * 59.99563 * 17 16 14 35 35 H 0.96697 * 117.00494 * 179.97438 * 22 20 18 36 36 H 1.08994 * 110.48794 * 339.59867 * 25 23 18 37 37 H 1.08998 * 110.48857 * 102.11614 * 25 23 18 38 38 H 1.08998 * 109.88350 * 117.39479 * 26 25 23 39 39 H 1.09000 * 109.87602 * 238.39523 * 26 25 23 40 40 H 1.09000 * 110.61637 * 201.43552 * 28 27 26 41 41 H 1.09003 * 110.61818 * 78.44036 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2405 1.6178 0.0000 4 1 2.3851 2.1057 1.3950 5 1 3.5857 1.4127 -0.5947 6 1 1.4931 2.6208 -0.8003 7 6 2.0080 -1.2151 -0.0005 8 1 3.0758 -1.2223 0.1606 9 6 1.3210 -2.4230 -0.2110 10 6 0.0540 -2.5148 -0.8930 11 6 -0.4276 -3.7480 -0.9931 12 16 0.6417 -4.9152 -0.2360 13 6 1.7872 -3.6649 0.2225 14 6 3.0369 -3.8905 0.9476 15 8 3.7625 -2.9507 1.2173 16 7 3.3860 -5.1389 1.3164 17 6 4.6383 -5.3651 2.0424 18 6 4.7934 -6.8580 2.3388 19 1 3.9120 -7.2165 2.8705 20 6 4.9411 -7.6146 1.0438 21 8 4.9235 -7.0206 -0.0082 22 8 5.0921 -8.9483 1.0591 23 6 6.0360 -7.0798 3.2035 24 1 6.9227 -6.6709 2.7192 25 6 6.2253 -8.5827 3.5234 26 6 6.6568 -8.6024 5.0027 27 8 6.7472 -7.2360 5.4398 28 6 5.8438 -6.4691 4.6150 29 1 -0.4849 0.8401 0.0004 30 1 -0.4590 -1.6524 -1.2925 31 1 -1.3609 -4.0000 -1.4747 32 1 2.8081 -5.8877 1.1013 33 1 5.4769 -5.0260 1.4344 34 1 4.6205 -4.8088 2.9796 35 1 5.1827 -9.3897 0.2036 36 1 5.2871 -9.1218 3.3925 37 1 7.0026 -9.0123 2.8915 38 1 5.9145 -9.1338 5.5983 39 1 7.6270 -9.0897 5.0992 40 1 6.1221 -5.4152 4.6184 41 1 4.8149 -6.5965 4.9515 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608189183.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:33 Heat of formation + Delta-G solvation = -182.740617 kcal Electronic energy + Delta-G solvation = -27039.511009 eV Core-core repulsion = 23009.304021 eV Total energy + Delta-G solvation = -4030.206988 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.83027 -40.15187 -40.02745 -37.94998 -37.19808 -36.30559 -34.91297 -34.21147 -31.39643 -30.74755 -29.21064 -28.01027 -26.04098 -23.95282 -23.41370 -22.64375 -21.78867 -21.24239 -20.60693 -19.39923 -19.13562 -18.01403 -17.74080 -17.45298 -17.11219 -17.04677 -16.21783 -16.14686 -15.94085 -15.91443 -15.59946 -15.34696 -14.65656 -14.24055 -14.20720 -14.01702 -13.78618 -13.75117 -13.59813 -13.17383 -13.04562 -12.86370 -12.73158 -12.65074 -12.53894 -12.25223 -12.09439 -12.02659 -12.00863 -11.68395 -11.42891 -11.39897 -11.07337 -10.62390 -10.39449 -9.94975 -9.35272 -8.94890 -8.86172 -6.45810 0.30554 1.14894 1.32857 1.34431 1.35911 1.48662 1.77680 1.96580 1.99023 2.17556 2.45273 2.56115 2.97795 3.22002 3.31668 3.63981 3.76866 3.90240 4.02984 4.21338 4.30766 4.35430 4.39162 4.42314 4.58940 4.68319 4.82656 4.88802 4.92427 4.93898 5.01137 5.13703 5.20334 5.27659 5.38359 5.56124 5.60942 5.68747 5.83176 5.91914 6.39464 6.56570 6.70780 6.93518 6.98474 7.72507 8.07482 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.014746 B = 0.003114 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1898.339077 B = 8988.379561 C =10228.719118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.036 3.964 3 Si 0.990 3.010 4 H -0.262 1.262 5 H -0.267 1.267 6 H -0.247 1.247 7 C -0.417 4.417 8 H 0.083 0.917 9 C 0.112 3.888 10 C -0.129 4.129 11 C -0.191 4.191 12 S 0.003 5.997 13 C -0.468 4.468 14 C 0.593 3.407 15 O -0.603 6.603 16 N -0.729 5.729 17 C 0.139 3.861 18 C -0.070 4.070 19 H 0.140 0.860 20 C 0.485 3.515 21 O -0.539 6.539 22 O -0.498 6.498 23 C -0.106 4.106 24 H 0.089 0.911 25 C -0.137 4.137 26 C 0.040 3.960 27 O -0.400 6.400 28 C 0.050 3.950 29 H 0.301 0.699 30 H 0.142 0.858 31 H 0.177 0.823 32 H 0.395 0.605 33 H 0.048 0.952 34 H 0.081 0.919 35 H 0.426 0.574 36 H 0.098 0.902 37 H 0.089 0.911 38 H 0.071 0.929 39 H 0.094 0.906 40 H 0.095 0.905 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.990 -16.199 5.498 18.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.184 4.184 3 Si 0.809 3.191 4 H -0.186 1.186 5 H -0.191 1.191 6 H -0.171 1.171 7 C -0.448 4.448 8 H 0.101 0.899 9 C 0.101 3.899 10 C -0.161 4.161 11 C -0.325 4.325 12 S 0.259 5.741 13 C -0.586 4.586 14 C 0.389 3.611 15 O -0.489 6.489 16 N -0.381 5.381 17 C 0.016 3.984 18 C -0.089 4.089 19 H 0.157 0.843 20 C 0.327 3.673 21 O -0.428 6.428 22 O -0.311 6.311 23 C -0.126 4.126 24 H 0.108 0.892 25 C -0.174 4.174 26 C -0.036 4.036 27 O -0.319 6.319 28 C -0.026 4.026 29 H 0.113 0.887 30 H 0.160 0.840 31 H 0.195 0.805 32 H 0.229 0.771 33 H 0.066 0.934 34 H 0.099 0.901 35 H 0.288 0.712 36 H 0.117 0.883 37 H 0.108 0.892 38 H 0.089 0.911 39 H 0.112 0.888 40 H 0.113 0.887 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 6.329 -16.563 6.146 18.766 hybrid contribution -0.077 1.645 -1.246 2.065 sum 6.252 -14.918 4.900 16.901 Atomic orbital electron populations 1.69650 1.08760 1.31920 1.31373 1.27048 0.95812 1.04811 0.90725 0.85075 0.78994 0.75205 0.79799 1.18645 1.19136 1.17087 1.20024 0.96890 0.90764 1.37132 0.89872 1.18383 0.90873 0.92393 0.88279 1.21635 0.96414 0.97205 1.00852 1.25444 1.04183 0.96071 1.06849 1.82274 1.16298 1.11996 1.63557 1.23073 1.06898 0.97106 1.31571 1.16969 0.84316 0.82115 0.77654 1.90610 1.55035 1.43243 1.60003 1.45478 1.23721 1.07928 1.60990 1.21133 0.86789 0.93764 0.96752 1.21292 1.02951 0.92609 0.92031 0.84250 1.23326 0.71376 0.81447 0.91127 1.90850 1.46721 1.70375 1.34876 1.84502 1.83832 1.20387 1.42383 1.22589 0.95768 0.98537 0.95682 0.89211 1.22998 1.04457 0.93843 0.96139 1.23370 1.02822 0.83276 0.94174 1.88877 1.64162 1.20172 1.58710 1.23709 0.94902 0.96735 0.87279 0.88746 0.84011 0.80538 0.77092 0.93366 0.90114 0.71222 0.88329 0.89249 0.91100 0.88827 0.88702 0.90379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -38.82 10.81 21.89 0.24 -38.59 16 2 C 0.04 1.81 5.39 85.37 0.46 2.27 16 3 Si 0.99 38.97 29.57 68.60 2.03 41.00 16 4 H -0.26 -10.09 7.11 99.48 0.71 -9.39 16 5 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 6 H -0.25 -8.62 7.11 99.48 0.71 -7.91 16 7 C -0.42 -23.93 8.51 23.34 0.20 -23.73 16 8 H 0.08 5.12 6.05 -2.91 -0.02 5.10 16 9 C 0.11 6.27 5.68 -20.89 -0.12 6.15 16 10 C -0.13 -6.39 9.05 22.60 0.20 -6.19 16 11 C -0.19 -8.15 11.07 66.64 0.74 -7.41 16 12 S 0.00 0.14 22.25 -56.49 -1.26 -1.12 16 13 C -0.47 -24.74 6.51 24.67 0.16 -24.58 16 14 C 0.59 30.63 7.76 86.32 0.67 31.30 16 15 O -0.60 -35.05 14.45 -4.53 -0.07 -35.12 16 16 N -0.73 -28.90 4.80 -467.49 -2.24 -31.14 16 17 C 0.14 4.39 4.55 86.38 0.39 4.78 16 18 C -0.07 -1.44 1.79 -11.54 -0.02 -1.46 16 19 H 0.14 2.29 8.09 -2.39 -0.02 2.27 16 20 C 0.48 10.89 7.26 71.24 0.52 11.41 16 21 O -0.54 -17.69 16.05 21.95 0.35 -17.33 16 22 O -0.50 -6.71 11.10 -51.39 -0.57 -7.28 16 23 C -0.11 -1.81 2.65 -9.49 -0.03 -1.83 16 24 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 25 C -0.14 -1.70 5.09 31.59 0.16 -1.54 16 26 C 0.04 0.54 7.70 72.35 0.56 1.10 16 27 O -0.40 -8.15 11.52 -148.98 -1.72 -9.87 16 28 C 0.05 0.91 6.36 72.66 0.46 1.37 16 29 H 0.30 12.91 8.29 -92.71 -0.77 12.15 16 30 H 0.14 7.01 6.39 -2.91 -0.02 6.99 16 31 H 0.18 5.98 8.06 -2.91 -0.02 5.96 16 32 H 0.39 14.30 7.23 -92.71 -0.67 13.63 16 33 H 0.05 1.74 7.96 -2.39 -0.02 1.72 16 34 H 0.08 2.46 7.27 -2.39 -0.02 2.45 16 35 H 0.43 2.79 9.10 -74.06 -0.67 2.12 16 36 H 0.10 1.06 7.00 -2.39 -0.02 1.04 16 37 H 0.09 0.99 8.13 -2.39 -0.02 0.97 16 38 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.09 1.82 7.97 -2.39 -0.02 1.80 16 41 H 0.08 1.26 8.01 -2.39 -0.02 1.24 16 Total: -1.00 -75.35 355.20 0.88 -74.47 By element: Atomic # 1 Polarization: 33.58 SS G_CDS: -0.24 Total: 33.34 kcal Atomic # 6 Polarization: -12.71 SS G_CDS: 4.36 Total: -8.35 kcal Atomic # 7 Polarization: -67.72 SS G_CDS: -2.01 Total: -69.73 kcal Atomic # 8 Polarization: -67.60 SS G_CDS: -2.00 Total: -69.60 kcal Atomic # 14 Polarization: 38.97 SS G_CDS: 2.03 Total: 41.00 kcal Atomic # 16 Polarization: 0.14 SS G_CDS: -1.26 Total: -1.12 kcal Total: -75.35 0.88 -74.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608189183.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.274 kcal (2) G-P(sol) polarization free energy of solvation -75.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds