Wall clock time and date at job start Tue Mar 31 2020 22:24:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30642 * 1 3 3 Si 1.86801 * 119.99714 * 2 1 4 4 H 1.48506 * 109.46934 * 83.30047 * 3 2 1 5 5 H 1.48500 * 109.46953 * 203.29432 * 3 2 1 6 6 H 1.48495 * 109.47552 * 323.29542 * 3 2 1 7 7 C 1.40299 * 119.99964 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00187 * 15.69811 * 7 2 1 9 9 C 1.40535 * 120.00136 * 195.69778 * 7 2 1 10 10 C 1.44186 * 123.71338 * 24.37114 * 9 7 2 11 11 C 1.32767 * 114.43237 * 179.75841 * 10 9 7 12 12 S 1.75469 * 111.36184 * 0.49847 * 11 10 9 13 13 C 1.39550 * 123.72025 * 204.67153 * 9 7 2 14 14 C 1.46234 * 125.22226 * 0.02562 * 13 9 7 15 15 O 1.21758 * 120.00672 * 359.97438 * 14 13 9 16 16 N 1.34783 * 119.99926 * 179.97438 * 14 13 9 17 17 C 1.46495 * 120.00408 * 179.97438 * 16 14 13 18 18 C 1.53000 * 109.47501 * 180.02562 * 17 16 14 19 19 H 1.09007 * 109.46594 * 55.00167 * 18 17 16 20 20 C 1.50701 * 109.47247 * 295.00717 * 18 17 16 21 21 O 1.20831 * 119.99925 * 359.97438 * 20 18 17 22 22 O 1.34225 * 120.00157 * 179.97438 * 20 18 17 23 23 C 1.52995 * 109.47135 * 175.00354 * 18 17 16 24 24 H 1.08997 * 110.80712 * 60.70470 * 23 18 17 25 25 C 1.54812 * 110.90712 * 297.07433 * 23 18 17 26 26 C 1.54106 * 104.18683 * 220.92448 * 25 23 18 27 27 O 1.43741 * 107.29228 * 357.96801 * 26 25 23 28 28 C 1.44417 * 107.00301 * 26.49307 * 27 26 25 29 29 H 0.97002 * 120.00145 * 173.14883 * 1 2 3 30 30 H 1.08008 * 122.78458 * 359.97438 * 10 9 7 31 31 H 1.07999 * 124.31918 * 180.20987 * 11 10 9 32 32 H 0.97002 * 119.99855 * 0.02562 * 16 14 13 33 33 H 1.08995 * 109.47310 * 300.00756 * 17 16 14 34 34 H 1.09003 * 109.46524 * 60.00116 * 17 16 14 35 35 H 0.96697 * 117.00186 * 179.97438 * 22 20 18 36 36 H 1.09002 * 110.48770 * 339.59409 * 25 23 18 37 37 H 1.08993 * 110.48879 * 102.25090 * 25 23 18 38 38 H 1.08996 * 109.87832 * 117.39295 * 26 25 23 39 39 H 1.09002 * 109.87854 * 238.39890 * 26 25 23 40 40 H 1.09006 * 110.65739 * 201.48170 * 28 27 26 41 41 H 1.09000 * 110.60658 * 78.46778 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 2.3463 2.1281 1.3906 5 1 3.6015 1.4035 -0.5537 6 1 1.5158 2.6077 -0.8368 7 6 2.0079 -1.2150 -0.0005 8 1 1.4981 -2.1328 -0.2540 9 6 3.3739 -1.2379 0.3287 10 6 4.0183 -0.2359 1.1410 11 6 5.3147 -0.4411 1.3406 12 16 5.8646 -1.8945 0.5257 13 6 4.2575 -2.2296 -0.0993 14 6 3.9003 -3.3720 -0.9395 15 8 2.7525 -3.5121 -1.3208 16 7 4.8418 -4.2698 -1.2920 17 6 4.4840 -5.4145 -2.1332 18 6 5.7262 -6.2721 -2.3828 19 1 6.1695 -6.5560 -1.4282 20 6 6.7277 -5.4838 -3.1870 21 8 6.4737 -4.3522 -3.5262 22 8 7.9018 -6.0386 -3.5265 23 6 5.3296 -7.5316 -3.1556 24 1 4.8944 -7.2726 -4.1208 25 6 4.3559 -8.4045 -2.3270 26 6 4.8362 -9.8473 -2.5767 27 8 5.9376 -9.7775 -3.4978 28 6 6.5446 -8.4776 -3.3325 29 1 -0.4850 -0.8341 -0.1002 30 1 3.4894 0.6096 1.5556 31 1 5.9507 0.2065 1.9258 32 1 5.7562 -4.1584 -0.9879 33 1 3.7251 -6.0128 -1.6291 34 1 4.0915 -5.0570 -3.0852 35 1 8.5116 -5.4942 -4.0429 36 1 4.4280 -8.1564 -1.2680 37 1 3.3330 -8.2763 -2.6810 38 1 5.1649 -10.2960 -1.6393 39 1 4.0274 -10.4380 -3.0068 40 1 7.1172 -8.2051 -4.2191 41 1 7.1774 -8.4597 -2.4452 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608189184.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:37 Heat of formation + Delta-G solvation = -159.265821 kcal Electronic energy + Delta-G solvation = -27125.329271 eV Core-core repulsion = 23096.140226 eV Total energy + Delta-G solvation = -4029.189045 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.90280 -39.39133 -38.37185 -36.56751 -36.14256 -35.14617 -33.36403 -32.87540 -30.39691 -29.26169 -28.32952 -26.37666 -24.66477 -22.96880 -21.86973 -21.63810 -20.49860 -20.39327 -19.15852 -18.40235 -17.79091 -17.34812 -16.68736 -16.35424 -16.03111 -15.46046 -15.19484 -14.99916 -14.70540 -14.51243 -14.19653 -13.78957 -13.54513 -13.34067 -13.24041 -12.95931 -12.51213 -12.29569 -12.09983 -11.89848 -11.83438 -11.69027 -11.58407 -11.46700 -11.29294 -11.17621 -10.96436 -10.80559 -10.50330 -10.08306 -9.98647 -9.95031 -9.60538 -9.30678 -8.53200 -8.32885 -7.80907 -7.55656 -7.26425 -4.62015 1.89452 2.05226 2.77947 2.81691 2.97179 3.20064 3.34996 3.46370 3.54678 3.63594 3.80013 3.83992 4.20901 4.37679 4.39208 4.47617 4.76454 4.82448 4.88682 4.95879 5.11572 5.15950 5.22986 5.47438 5.50232 5.56799 5.66948 5.73036 5.77633 5.82816 5.96667 6.11066 6.34149 6.57450 6.62251 6.86137 7.07642 7.20505 7.33228 7.45320 7.75130 8.10523 8.32193 8.48651 8.68371 9.50702 9.75944 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.017865 B = 0.003049 C = 0.002804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.925348 B = 9181.112864 C = 9984.574068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.784 5.784 2 C 0.035 3.965 3 Si 1.066 2.934 4 H -0.273 1.273 5 H -0.256 1.256 6 H -0.282 1.282 7 C -0.426 4.426 8 H 0.109 0.891 9 C 0.113 3.887 10 C -0.162 4.162 11 C -0.176 4.176 12 S -0.024 6.024 13 C -0.430 4.430 14 C 0.603 3.397 15 O -0.561 6.561 16 N -0.745 5.745 17 C 0.144 3.856 18 C -0.081 4.081 19 H 0.116 0.884 20 C 0.473 3.527 21 O -0.486 6.486 22 O -0.519 6.519 23 C -0.112 4.112 24 H 0.096 0.904 25 C -0.153 4.153 26 C 0.047 3.953 27 O -0.380 6.380 28 C 0.058 3.942 29 H 0.295 0.705 30 H 0.126 0.874 31 H 0.145 0.855 32 H 0.387 0.613 33 H 0.076 0.924 34 H 0.070 0.930 35 H 0.409 0.591 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.060 0.940 39 H 0.084 0.916 40 H 0.100 0.900 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.412 -12.313 -3.005 17.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.406 5.406 2 C -0.189 4.189 3 Si 0.891 3.109 4 H -0.200 1.200 5 H -0.180 1.180 6 H -0.209 1.209 7 C -0.456 4.456 8 H 0.127 0.873 9 C 0.102 3.898 10 C -0.195 4.195 11 C -0.310 4.310 12 S 0.233 5.767 13 C -0.548 4.548 14 C 0.400 3.600 15 O -0.444 6.444 16 N -0.398 5.398 17 C 0.020 3.980 18 C -0.101 4.101 19 H 0.134 0.866 20 C 0.313 3.687 21 O -0.370 6.370 22 O -0.332 6.332 23 C -0.131 4.131 24 H 0.114 0.886 25 C -0.190 4.190 26 C -0.030 4.030 27 O -0.299 6.299 28 C -0.018 4.018 29 H 0.107 0.893 30 H 0.143 0.857 31 H 0.163 0.837 32 H 0.220 0.780 33 H 0.094 0.906 34 H 0.088 0.912 35 H 0.268 0.732 36 H 0.103 0.897 37 H 0.105 0.895 38 H 0.078 0.922 39 H 0.103 0.897 40 H 0.118 0.882 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 12.358 -11.645 -3.344 17.306 hybrid contribution -0.398 -0.320 0.141 0.530 sum 11.959 -11.965 -3.203 17.217 Atomic orbital electron populations 1.70403 1.08149 1.34185 1.27821 1.27641 0.95817 1.04846 0.90611 0.83788 0.76394 0.72778 0.77920 1.19973 1.18010 1.20892 1.21010 0.93350 0.97522 1.33751 0.87298 1.17919 0.93127 0.89079 0.89686 1.21423 0.94655 1.01018 1.02450 1.24920 0.98679 1.01702 1.05746 1.82769 1.14483 1.24069 1.55367 1.22439 0.93762 1.11502 1.27143 1.16711 0.83877 0.80549 0.78842 1.90675 1.19801 1.76174 1.57780 1.45676 1.12204 1.26679 1.55288 1.20976 0.93164 0.87257 0.96653 1.21369 0.94181 0.95304 0.99202 0.86634 1.23344 0.81304 0.85924 0.78145 1.90854 1.76990 1.18930 1.50272 1.84523 1.28802 1.50484 1.69362 1.22650 0.97397 0.93140 0.99921 0.88594 1.23064 1.00391 0.94206 1.01379 1.23169 0.89602 0.96608 0.93606 1.88882 1.45768 1.34482 1.60743 1.23654 0.94113 0.81176 1.02906 0.89315 0.85710 0.83695 0.78005 0.90551 0.91202 0.73165 0.89743 0.89524 0.92210 0.89735 0.88195 0.91470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.59 13.64 55.57 0.76 -19.83 16 2 C 0.03 0.90 5.49 -17.28 -0.09 0.80 16 3 Si 1.07 22.97 24.85 -169.99 -4.22 18.74 16 4 H -0.27 -5.36 6.81 56.52 0.38 -4.97 16 5 H -0.26 -5.51 6.41 56.52 0.36 -5.15 16 6 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 7 C -0.43 -11.79 8.88 -37.94 -0.34 -12.13 16 8 H 0.11 3.32 6.28 -52.48 -0.33 2.99 16 9 C 0.11 2.93 5.30 -106.21 -0.56 2.37 16 10 C -0.16 -3.67 7.37 -39.12 -0.29 -3.96 16 11 C -0.18 -3.52 11.07 28.86 0.32 -3.20 16 12 S -0.02 -0.48 22.25 -107.50 -2.39 -2.88 16 13 C -0.43 -10.73 6.51 -35.88 -0.23 -10.97 16 14 C 0.60 14.83 7.76 -13.05 -0.10 14.73 16 15 O -0.56 -15.60 14.47 5.14 0.07 -15.52 16 16 N -0.75 -14.27 4.80 -61.76 -0.30 -14.57 16 17 C 0.14 2.21 4.52 -4.04 -0.02 2.20 16 18 C -0.08 -0.88 1.76 -91.77 -0.16 -1.04 16 19 H 0.12 1.07 8.14 -51.92 -0.42 0.65 16 20 C 0.47 5.60 7.28 36.01 0.26 5.86 16 21 O -0.49 -7.94 16.05 -18.75 -0.30 -8.24 16 22 O -0.52 -4.21 11.36 -39.24 -0.45 -4.66 16 23 C -0.11 -1.03 2.64 -88.61 -0.23 -1.26 16 24 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 25 C -0.15 -1.27 5.57 -25.20 -0.14 -1.41 16 26 C 0.05 0.39 7.70 37.74 0.29 0.68 16 27 O -0.38 -3.97 11.52 -35.23 -0.41 -4.37 16 28 C 0.06 0.51 5.85 38.21 0.22 0.73 16 29 H 0.29 7.64 8.73 -40.82 -0.36 7.28 16 30 H 0.13 2.63 4.44 -52.48 -0.23 2.40 16 31 H 0.15 2.32 8.06 -52.49 -0.42 1.90 16 32 H 0.39 6.86 7.24 -40.82 -0.30 6.56 16 33 H 0.08 1.13 7.11 -51.93 -0.37 0.76 16 34 H 0.07 1.21 7.96 -51.93 -0.41 0.80 16 35 H 0.41 1.87 9.10 45.56 0.41 2.29 16 36 H 0.08 0.67 7.70 -51.93 -0.40 0.27 16 37 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.10 0.83 7.39 -51.93 -0.38 0.45 16 41 H 0.07 0.55 8.04 -51.93 -0.42 0.13 16 LS Contribution 349.70 15.07 5.27 5.27 Total: -1.00 -33.64 349.70 -7.21 -40.85 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: -4.17 Total: 11.81 kcal Atomic # 6 Polarization: -5.52 SS G_CDS: -1.08 Total: -6.60 kcal Atomic # 7 Polarization: -34.86 SS G_CDS: 0.46 Total: -34.40 kcal Atomic # 8 Polarization: -31.72 SS G_CDS: -1.08 Total: -32.80 kcal Atomic # 14 Polarization: 22.97 SS G_CDS: -4.22 Total: 18.74 kcal Atomic # 16 Polarization: -0.48 SS G_CDS: -2.39 Total: -2.88 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -33.64 -7.21 -40.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608189184.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.419 kcal (2) G-P(sol) polarization free energy of solvation -33.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds