Wall clock time and date at job start Tue Mar 31 2020 22:24:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30642 * 1 3 3 Si 1.86801 * 119.99714 * 2 1 4 4 H 1.48506 * 109.46934 * 83.30047 * 3 2 1 5 5 H 1.48500 * 109.46953 * 203.29432 * 3 2 1 6 6 H 1.48495 * 109.47552 * 323.29542 * 3 2 1 7 7 C 1.40299 * 119.99964 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00187 * 15.69811 * 7 2 1 9 9 C 1.40535 * 120.00136 * 195.69778 * 7 2 1 10 10 C 1.44186 * 123.71338 * 24.37114 * 9 7 2 11 11 C 1.32767 * 114.43237 * 179.75841 * 10 9 7 12 12 S 1.75469 * 111.36184 * 0.49847 * 11 10 9 13 13 C 1.39550 * 123.72025 * 204.67153 * 9 7 2 14 14 C 1.46234 * 125.22226 * 0.02562 * 13 9 7 15 15 O 1.21758 * 120.00672 * 359.97438 * 14 13 9 16 16 N 1.34783 * 119.99926 * 179.97438 * 14 13 9 17 17 C 1.46495 * 120.00408 * 179.97438 * 16 14 13 18 18 C 1.53000 * 109.47501 * 180.02562 * 17 16 14 19 19 H 1.09007 * 109.46594 * 55.00167 * 18 17 16 20 20 C 1.50701 * 109.47247 * 295.00717 * 18 17 16 21 21 O 1.20831 * 119.99925 * 359.97438 * 20 18 17 22 22 O 1.34225 * 120.00157 * 179.97438 * 20 18 17 23 23 C 1.52995 * 109.47135 * 175.00354 * 18 17 16 24 24 H 1.08997 * 110.80712 * 60.70470 * 23 18 17 25 25 C 1.54812 * 110.90712 * 297.07433 * 23 18 17 26 26 C 1.54106 * 104.18683 * 220.92448 * 25 23 18 27 27 O 1.43741 * 107.29228 * 357.96801 * 26 25 23 28 28 C 1.44417 * 107.00301 * 26.49307 * 27 26 25 29 29 H 0.97002 * 120.00145 * 173.14883 * 1 2 3 30 30 H 1.08008 * 122.78458 * 359.97438 * 10 9 7 31 31 H 1.07999 * 124.31918 * 180.20987 * 11 10 9 32 32 H 0.97002 * 119.99855 * 0.02562 * 16 14 13 33 33 H 1.08995 * 109.47310 * 300.00756 * 17 16 14 34 34 H 1.09003 * 109.46524 * 60.00116 * 17 16 14 35 35 H 0.96697 * 117.00186 * 179.97438 * 22 20 18 36 36 H 1.09002 * 110.48770 * 339.59409 * 25 23 18 37 37 H 1.08993 * 110.48879 * 102.25090 * 25 23 18 38 38 H 1.08996 * 109.87832 * 117.39295 * 26 25 23 39 39 H 1.09002 * 109.87854 * 238.39890 * 26 25 23 40 40 H 1.09006 * 110.65739 * 201.48170 * 28 27 26 41 41 H 1.09000 * 110.60658 * 78.46778 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 2.3463 2.1281 1.3906 5 1 3.6015 1.4035 -0.5537 6 1 1.5158 2.6077 -0.8368 7 6 2.0079 -1.2150 -0.0005 8 1 1.4981 -2.1328 -0.2540 9 6 3.3739 -1.2379 0.3287 10 6 4.0183 -0.2359 1.1410 11 6 5.3147 -0.4411 1.3406 12 16 5.8646 -1.8945 0.5257 13 6 4.2575 -2.2296 -0.0993 14 6 3.9003 -3.3720 -0.9395 15 8 2.7525 -3.5121 -1.3208 16 7 4.8418 -4.2698 -1.2920 17 6 4.4840 -5.4145 -2.1332 18 6 5.7262 -6.2721 -2.3828 19 1 6.1695 -6.5560 -1.4282 20 6 6.7277 -5.4838 -3.1870 21 8 6.4737 -4.3522 -3.5262 22 8 7.9018 -6.0386 -3.5265 23 6 5.3296 -7.5316 -3.1556 24 1 4.8944 -7.2726 -4.1208 25 6 4.3559 -8.4045 -2.3270 26 6 4.8362 -9.8473 -2.5767 27 8 5.9376 -9.7775 -3.4978 28 6 6.5446 -8.4776 -3.3325 29 1 -0.4850 -0.8341 -0.1002 30 1 3.4894 0.6096 1.5556 31 1 5.9507 0.2065 1.9258 32 1 5.7562 -4.1584 -0.9879 33 1 3.7251 -6.0128 -1.6291 34 1 4.0915 -5.0570 -3.0852 35 1 8.5116 -5.4942 -4.0429 36 1 4.4280 -8.1564 -1.2680 37 1 3.3330 -8.2763 -2.6810 38 1 5.1649 -10.2960 -1.6393 39 1 4.0274 -10.4380 -3.0068 40 1 7.1172 -8.2051 -4.2191 41 1 7.1774 -8.4597 -2.4452 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608189184.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:36 Heat of formation + Delta-G solvation = -185.543797 kcal Electronic energy + Delta-G solvation = -27126.468769 eV Core-core repulsion = 23096.140226 eV Total energy + Delta-G solvation = -4030.328543 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.87087 -40.20634 -40.13620 -38.16481 -37.26219 -36.39102 -35.25036 -34.27314 -31.32742 -30.87803 -29.52233 -28.00374 -25.89953 -23.96276 -23.37516 -22.58042 -22.08742 -21.48265 -21.00049 -19.56734 -19.24236 -18.29545 -18.20639 -17.47273 -16.91583 -16.73621 -16.38157 -16.29368 -16.08755 -15.91361 -15.72564 -15.26045 -15.00001 -14.58940 -14.45375 -14.16678 -13.85943 -13.73789 -13.71301 -13.37834 -13.02492 -12.88744 -12.78060 -12.59167 -12.52303 -12.36574 -12.05114 -11.89928 -11.74980 -11.68756 -11.48817 -11.36890 -11.09486 -10.64206 -10.49977 -10.05371 -9.72660 -9.37774 -9.08093 -6.61237 0.10215 1.09961 1.15828 1.26194 1.48306 1.56916 1.68033 1.78374 1.93502 2.11453 2.35608 2.47628 2.94010 3.15268 3.22519 3.56705 3.61729 3.97914 4.01152 4.11786 4.20374 4.25420 4.34188 4.37606 4.40817 4.59154 4.64478 4.83201 4.86608 4.90574 4.91930 5.02743 5.11595 5.15215 5.24645 5.35313 5.51897 5.57336 5.60148 5.90221 6.15500 6.28266 6.60836 6.83213 6.94468 7.62022 7.76456 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.017865 B = 0.003049 C = 0.002804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.925348 B = 9181.112864 C = 9984.574068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.004 3.996 3 Si 1.101 2.899 4 H -0.233 1.233 5 H -0.254 1.254 6 H -0.278 1.278 7 C -0.473 4.473 8 H 0.059 0.941 9 C 0.100 3.900 10 C -0.196 4.196 11 C -0.151 4.151 12 S 0.044 5.956 13 C -0.463 4.463 14 C 0.590 3.410 15 O -0.606 6.606 16 N -0.727 5.727 17 C 0.142 3.858 18 C -0.069 4.069 19 H 0.143 0.857 20 C 0.483 3.517 21 O -0.538 6.538 22 O -0.500 6.500 23 C -0.107 4.107 24 H 0.088 0.912 25 C -0.153 4.153 26 C 0.046 3.954 27 O -0.400 6.400 28 C 0.062 3.938 29 H 0.281 0.719 30 H 0.142 0.858 31 H 0.199 0.801 32 H 0.397 0.603 33 H 0.081 0.919 34 H 0.044 0.956 35 H 0.429 0.571 36 H 0.091 0.909 37 H 0.083 0.917 38 H 0.073 0.927 39 H 0.092 0.908 40 H 0.105 0.895 41 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.495 -12.276 -1.778 20.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C -0.213 4.213 3 Si 0.919 3.081 4 H -0.158 1.158 5 H -0.179 1.179 6 H -0.204 1.204 7 C -0.504 4.504 8 H 0.077 0.923 9 C 0.089 3.911 10 C -0.229 4.229 11 C -0.286 4.286 12 S 0.301 5.699 13 C -0.582 4.582 14 C 0.386 3.614 15 O -0.492 6.492 16 N -0.379 5.379 17 C 0.018 3.982 18 C -0.088 4.088 19 H 0.160 0.840 20 C 0.325 3.675 21 O -0.427 6.427 22 O -0.313 6.313 23 C -0.127 4.127 24 H 0.106 0.894 25 C -0.191 4.191 26 C -0.031 4.031 27 O -0.319 6.319 28 C -0.014 4.014 29 H 0.092 0.908 30 H 0.159 0.841 31 H 0.216 0.784 32 H 0.232 0.768 33 H 0.099 0.901 34 H 0.062 0.938 35 H 0.291 0.709 36 H 0.109 0.891 37 H 0.102 0.898 38 H 0.091 0.909 39 H 0.110 0.890 40 H 0.123 0.877 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 16.507 -11.684 -2.115 20.333 hybrid contribution -1.418 -0.591 -0.317 1.568 sum 15.089 -12.275 -2.431 19.603 Atomic orbital electron populations 1.70488 1.08692 1.33210 1.30747 1.28931 0.95876 1.07369 0.89119 0.83427 0.75160 0.69305 0.80213 1.15780 1.17877 1.20426 1.20802 0.94985 0.96689 1.37937 0.92274 1.18316 0.92744 0.90604 0.89433 1.21407 0.95857 1.01718 1.03923 1.25585 0.98203 1.01103 1.03714 1.82428 1.09999 1.23784 1.53643 1.23083 0.97204 1.11180 1.26719 1.17056 0.84018 0.81453 0.78834 1.90657 1.21890 1.77347 1.59275 1.45475 1.11613 1.26405 1.54431 1.21096 0.95853 0.86503 0.94738 1.21247 0.92119 0.94707 1.00761 0.83976 1.23368 0.81978 0.84967 0.77164 1.90854 1.78141 1.21165 1.52520 1.84469 1.27677 1.50155 1.69047 1.22594 0.98213 0.92431 0.99433 0.89368 1.23084 1.00062 0.94354 1.01584 1.23274 0.89410 0.96412 0.93964 1.88865 1.46453 1.35079 1.61508 1.23689 0.93646 0.80307 1.03775 0.90807 0.84109 0.78392 0.76847 0.90104 0.93757 0.70914 0.89071 0.89829 0.90883 0.89024 0.87712 0.90134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -45.06 13.64 21.89 0.30 -44.76 16 2 C 0.00 0.23 5.49 85.37 0.47 0.70 16 3 Si 1.10 45.83 24.85 68.60 1.70 47.54 16 4 H -0.23 -8.22 6.81 99.48 0.68 -7.54 16 5 H -0.25 -10.43 6.41 99.48 0.64 -9.80 16 6 H -0.28 -11.22 7.11 99.48 0.71 -10.51 16 7 C -0.47 -27.88 8.88 23.33 0.21 -27.68 16 8 H 0.06 3.97 6.28 -2.91 -0.02 3.96 16 9 C 0.10 5.31 5.30 -20.89 -0.11 5.20 16 10 C -0.20 -8.44 7.37 22.60 0.17 -8.27 16 11 C -0.15 -5.37 11.07 66.64 0.74 -4.63 16 12 S 0.04 1.64 22.25 -56.49 -1.26 0.38 16 13 C -0.46 -23.21 6.51 24.67 0.16 -23.05 16 14 C 0.59 29.98 7.76 86.32 0.67 30.65 16 15 O -0.61 -35.99 14.47 -4.53 -0.07 -36.05 16 16 N -0.73 -27.90 4.80 -467.49 -2.24 -30.15 16 17 C 0.14 4.41 4.52 86.38 0.39 4.80 16 18 C -0.07 -1.39 1.76 -11.54 -0.02 -1.41 16 19 H 0.14 2.17 8.14 -2.38 -0.02 2.15 16 20 C 0.48 10.58 7.28 71.24 0.52 11.10 16 21 O -0.54 -17.27 16.05 21.95 0.35 -16.92 16 22 O -0.50 -6.57 11.36 -51.37 -0.58 -7.15 16 23 C -0.11 -1.81 2.64 -9.49 -0.03 -1.83 16 24 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 25 C -0.15 -2.35 5.57 31.59 0.18 -2.17 16 26 C 0.05 0.67 7.70 72.36 0.56 1.22 16 27 O -0.40 -7.53 11.52 -148.98 -1.72 -9.25 16 28 C 0.06 0.93 5.85 72.67 0.42 1.36 16 29 H 0.28 15.91 8.73 -92.71 -0.81 15.10 16 30 H 0.14 5.53 4.44 -2.91 -0.01 5.52 16 31 H 0.20 4.92 8.06 -2.91 -0.02 4.90 16 32 H 0.40 13.49 7.24 -92.71 -0.67 12.82 16 33 H 0.08 2.45 7.11 -2.39 -0.02 2.43 16 34 H 0.04 1.62 7.96 -2.39 -0.02 1.60 16 35 H 0.43 2.57 9.10 -74.06 -0.67 1.89 16 36 H 0.09 1.28 7.70 -2.39 -0.02 1.26 16 37 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.10 1.46 7.39 -2.38 -0.02 1.44 16 41 H 0.08 1.02 8.04 -2.39 -0.02 1.00 16 Total: -1.00 -79.61 349.70 0.43 -79.18 By element: Atomic # 1 Polarization: 31.56 SS G_CDS: -0.38 Total: 31.19 kcal Atomic # 6 Polarization: -18.33 SS G_CDS: 4.32 Total: -14.01 kcal Atomic # 7 Polarization: -72.96 SS G_CDS: -1.95 Total: -74.90 kcal Atomic # 8 Polarization: -67.36 SS G_CDS: -2.01 Total: -69.37 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 1.70 Total: 47.54 kcal Atomic # 16 Polarization: 1.64 SS G_CDS: -1.26 Total: 0.38 kcal Total: -79.61 0.43 -79.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608189184.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.363 kcal (2) G-P(sol) polarization free energy of solvation -79.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds