Wall clock time and date at job start Tue Mar 31 2020 22:24:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30642 * 1 3 3 Si 1.86798 * 119.99912 * 2 1 4 4 H 1.48506 * 109.46966 * 269.99893 * 3 2 1 5 5 H 1.48499 * 109.47128 * 29.99697 * 3 2 1 6 6 H 1.48498 * 109.47204 * 150.00238 * 3 2 1 7 7 C 1.40310 * 119.99759 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99385 * 184.58571 * 7 2 1 9 9 C 1.40538 * 120.00345 * 4.58419 * 7 2 1 10 10 C 1.44192 * 123.70940 * 326.48484 * 9 7 2 11 11 C 1.32765 * 114.42512 * 180.02562 * 10 9 7 12 12 S 1.75468 * 111.36551 * 359.73503 * 11 10 9 13 13 C 1.39543 * 123.71636 * 146.49006 * 9 7 2 14 14 C 1.46234 * 125.22884 * 359.97438 * 13 9 7 15 15 O 1.21764 * 120.00013 * 0.02562 * 14 13 9 16 16 N 1.34773 * 120.00397 * 179.97438 * 14 13 9 17 17 C 1.46496 * 120.00312 * 184.87858 * 16 14 13 18 18 C 1.52997 * 109.52078 * 56.11275 * 17 16 14 19 19 C 1.50696 * 109.47258 * 53.95132 * 18 17 16 20 20 O 1.20825 * 120.00183 * 1.74789 * 19 18 17 21 21 O 1.34231 * 120.00174 * 181.74906 * 19 18 17 22 22 C 1.53177 * 109.52039 * 295.98815 * 17 16 14 23 23 C 1.53181 * 109.03428 * 297.07070 * 22 17 16 24 24 C 1.53084 * 109.16722 * 303.02085 * 23 22 17 25 25 O 1.42907 * 109.41480 * 57.61107 * 24 23 22 26 26 C 1.42905 * 114.09497 * 298.84092 * 25 24 23 27 27 H 0.96998 * 120.00516 * 359.97438 * 1 2 3 28 28 H 1.07998 * 122.78861 * 359.97438 * 10 9 7 29 29 H 1.08006 * 124.31954 * 180.02562 * 11 10 9 30 30 H 0.97006 * 119.99520 * 4.87789 * 16 14 13 31 31 H 1.09005 * 109.46841 * 173.95404 * 18 17 16 32 32 H 1.09002 * 109.47015 * 293.94563 * 18 17 16 33 33 H 0.96703 * 117.00042 * 180.02562 * 21 19 18 34 34 H 1.09001 * 109.54057 * 177.20826 * 22 17 16 35 35 H 1.08994 * 109.54934 * 56.94106 * 22 17 16 36 36 H 1.09007 * 109.52190 * 183.11501 * 23 22 17 37 37 H 1.08999 * 109.52047 * 62.93001 * 23 22 17 38 38 H 1.09002 * 109.48263 * 177.58674 * 24 23 22 39 39 H 1.09003 * 109.48427 * 297.62869 * 24 23 22 40 40 H 1.09001 * 109.48190 * 301.17253 * 26 25 24 41 41 H 1.08998 * 109.47937 * 181.14098 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 2.4879 2.0464 -1.4001 5 1 1.4378 2.6527 0.7000 6 1 3.5380 1.4402 0.7000 7 6 2.0079 -1.2152 0.0005 8 1 3.0853 -1.2165 0.0753 9 6 1.3086 -2.4304 -0.0962 10 6 -0.0001 -2.6477 0.4687 11 6 -0.4892 -3.8656 0.2683 12 16 0.6276 -4.8599 -0.6498 13 6 1.8044 -3.5594 -0.7494 14 6 3.1016 -3.6450 -1.4190 15 8 3.8438 -2.6799 -1.4341 16 7 3.4761 -4.7925 -2.0185 17 6 4.8170 -4.9135 -2.5960 18 6 5.8650 -4.6150 -1.5220 19 6 5.6232 -5.4981 -0.3251 20 8 4.7263 -6.3075 -0.3427 21 8 6.4043 -5.3856 0.7607 22 6 4.9689 -3.9179 -3.7502 23 6 3.9661 -4.2737 -4.8521 24 6 4.2004 -5.7195 -5.2973 25 8 4.0747 -6.5897 -4.1707 26 6 5.0184 -6.3347 -3.1283 27 1 -0.4851 0.8400 0.0004 28 1 -0.5375 -1.8835 1.0107 29 1 -1.4537 -4.2001 0.6210 30 1 2.8577 -5.5383 -2.0677 31 1 6.8603 -4.8092 -1.9218 32 1 5.7912 -3.5694 -1.2230 33 1 6.2109 -5.9738 1.5036 34 1 5.9823 -3.9728 -4.1479 35 1 4.7715 -2.9085 -3.3895 36 1 4.1049 -3.6041 -5.7010 37 1 2.9512 -4.1707 -4.4680 38 1 3.4618 -5.9920 -6.0511 39 1 5.2014 -5.8125 -5.7185 40 1 6.0301 -6.4357 -3.5212 41 1 4.8691 -7.0503 -2.3198 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608189420.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:23 Heat of formation + Delta-G solvation = -151.564885 kcal Electronic energy + Delta-G solvation = -28716.968926 eV Core-core repulsion = 24688.113819 eV Total energy + Delta-G solvation = -4028.855107 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.74455 -39.26790 -37.80367 -36.13763 -35.79882 -34.40784 -32.97170 -32.31405 -31.17609 -28.83125 -27.97526 -26.03980 -25.03269 -23.22616 -22.27898 -20.97245 -20.61447 -18.76398 -18.70183 -17.80130 -17.71068 -16.38392 -16.27548 -15.95581 -15.67317 -15.39362 -15.28894 -14.77467 -14.55333 -14.21974 -13.83709 -13.64256 -13.13458 -12.65388 -12.57149 -12.37191 -12.31841 -12.29675 -11.94986 -11.90706 -11.74529 -11.44905 -11.29203 -11.06280 -10.99429 -10.89146 -10.75604 -10.39475 -10.33666 -10.16064 -10.03261 -9.54513 -9.39564 -9.25257 -8.34157 -8.18654 -7.42322 -7.01843 -6.93596 -4.49058 2.16336 2.49358 3.00017 3.04009 3.09530 3.16142 3.23994 3.65619 3.83124 3.85622 3.91505 4.15660 4.41785 4.77503 4.83469 4.99880 5.12249 5.16926 5.25379 5.39067 5.44944 5.47631 5.65292 5.72398 5.83320 5.89186 6.08756 6.09095 6.17143 6.43602 6.55540 6.67750 6.75108 6.92354 7.20941 7.21317 7.25201 7.39193 7.51138 7.77919 8.14054 8.40222 8.52576 8.65922 8.80279 9.56687 9.99164 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.011384 B = 0.004670 C = 0.004484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2459.109864 B = 5994.450634 C = 6242.820671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.069 3.931 3 Si 0.927 3.073 4 H -0.266 1.266 5 H -0.277 1.277 6 H -0.257 1.257 7 C -0.384 4.384 8 H 0.102 0.898 9 C 0.145 3.855 10 C -0.100 4.100 11 C -0.210 4.210 12 S -0.036 6.036 13 C -0.414 4.414 14 C 0.604 3.396 15 O -0.564 6.564 16 N -0.721 5.721 17 C 0.169 3.831 18 C -0.129 4.129 19 C 0.481 3.519 20 O -0.501 6.501 21 O -0.521 6.521 22 C -0.133 4.133 23 C -0.151 4.151 24 C 0.059 3.941 25 O -0.374 6.374 26 C 0.054 3.946 27 H 0.285 0.715 28 H 0.144 0.856 29 H 0.137 0.863 30 H 0.399 0.601 31 H 0.103 0.897 32 H 0.134 0.866 33 H 0.406 0.594 34 H 0.063 0.937 35 H 0.099 0.901 36 H 0.070 0.930 37 H 0.078 0.922 38 H 0.091 0.909 39 H 0.046 0.954 40 H 0.056 0.944 41 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.677 -7.071 -4.597 12.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.151 4.151 3 Si 0.751 3.249 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.181 1.181 7 C -0.416 4.416 8 H 0.120 0.880 9 C 0.133 3.867 10 C -0.132 4.132 11 C -0.344 4.344 12 S 0.220 5.780 13 C -0.533 4.533 14 C 0.401 3.599 15 O -0.448 6.448 16 N -0.374 5.374 17 C 0.081 3.919 18 C -0.168 4.168 19 C 0.323 3.677 20 O -0.388 6.388 21 O -0.333 6.333 22 C -0.171 4.171 23 C -0.189 4.189 24 C -0.018 4.018 25 O -0.292 6.292 26 C -0.023 4.023 27 H 0.096 0.904 28 H 0.162 0.838 29 H 0.154 0.846 30 H 0.234 0.766 31 H 0.121 0.879 32 H 0.152 0.848 33 H 0.264 0.736 34 H 0.081 0.919 35 H 0.117 0.883 36 H 0.089 0.911 37 H 0.096 0.904 38 H 0.109 0.891 39 H 0.064 0.936 40 H 0.074 0.926 41 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 8.644 -7.843 -5.446 12.880 hybrid contribution -0.126 1.647 0.970 1.916 sum 8.518 -6.196 -4.476 11.445 Atomic orbital electron populations 1.69632 1.07879 1.30002 1.34230 1.26254 0.94939 1.02185 0.91756 0.85993 0.80300 0.79044 0.79596 1.19108 1.20227 1.18113 1.19712 0.96302 0.88672 1.36906 0.88010 1.17961 0.89784 0.91782 0.87171 1.21735 0.96433 0.94920 1.00148 1.25015 1.02823 0.98896 1.07716 1.82948 1.13026 1.19575 1.62466 1.22854 1.02534 1.00230 1.27703 1.16821 0.85211 0.81141 0.76766 1.90587 1.54476 1.36662 1.63068 1.45682 1.13772 1.16994 1.60956 1.20420 0.84098 0.95875 0.91489 1.21883 1.00774 1.02959 0.91144 1.23382 0.78548 0.81991 0.83753 1.90686 1.30289 1.36020 1.81783 1.84534 1.58587 1.63212 1.27000 1.22028 0.98577 1.01993 0.94519 1.22104 1.01553 0.96480 0.98719 1.22626 1.00771 0.89970 0.88412 1.87975 1.57031 1.56174 1.28032 1.23075 0.92458 0.95846 0.90953 0.90385 0.83810 0.84560 0.76601 0.87909 0.84791 0.73639 0.91860 0.88279 0.91131 0.90355 0.89119 0.93572 0.92591 0.86961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.49 10.91 55.57 0.61 -18.88 16 2 C 0.07 1.69 5.47 -17.28 -0.09 1.59 16 3 Si 0.93 18.93 29.57 -169.99 -5.03 13.91 16 4 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 5 H -0.28 -5.38 7.11 56.52 0.40 -4.98 16 6 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 7 C -0.38 -10.27 8.24 -37.94 -0.31 -10.58 16 8 H 0.10 2.81 6.48 -52.49 -0.34 2.47 16 9 C 0.14 3.85 5.62 -106.21 -0.60 3.26 16 10 C -0.10 -2.46 9.04 -39.12 -0.35 -2.82 16 11 C -0.21 -4.69 11.07 28.86 0.32 -4.37 16 12 S -0.04 -0.81 22.26 -107.50 -2.39 -3.20 16 13 C -0.41 -10.45 6.51 -35.89 -0.23 -10.68 16 14 C 0.60 14.09 7.09 -13.05 -0.09 13.99 16 15 O -0.56 -13.92 10.92 5.13 0.06 -13.86 16 16 N -0.72 -13.90 2.84 -48.90 -0.14 -14.04 16 17 C 0.17 2.63 0.27 -131.68 -0.04 2.59 16 18 C -0.13 -1.89 4.50 -27.89 -0.13 -2.02 16 19 C 0.48 7.51 7.81 36.00 0.28 7.79 16 20 O -0.50 -8.91 13.81 -18.75 -0.26 -9.17 16 21 O -0.52 -6.87 13.42 -39.26 -0.53 -7.39 16 22 C -0.13 -1.94 4.70 -26.55 -0.12 -2.07 16 23 C -0.15 -2.09 5.97 -26.59 -0.16 -2.25 16 24 C 0.06 0.71 6.84 37.20 0.25 0.97 16 25 O -0.37 -5.47 10.57 -35.23 -0.37 -5.84 16 26 C 0.05 0.74 5.31 37.21 0.20 0.93 16 27 H 0.29 6.35 8.29 -40.82 -0.34 6.02 16 28 H 0.14 3.55 6.60 -52.49 -0.35 3.20 16 29 H 0.14 2.59 8.06 -52.48 -0.42 2.17 16 30 H 0.40 7.96 7.47 -40.82 -0.30 7.65 16 31 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.13 2.31 6.26 -51.93 -0.33 1.98 16 33 H 0.41 3.67 9.10 45.56 0.41 4.09 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.10 1.77 6.24 -51.93 -0.32 1.44 16 36 H 0.07 0.85 8.14 -51.92 -0.42 0.43 16 37 H 0.08 1.32 7.76 -51.93 -0.40 0.91 16 38 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.11 1.66 6.06 -51.93 -0.31 1.35 16 LS Contribution 345.24 15.07 5.20 5.20 Total: -1.00 -30.38 345.24 -7.96 -38.34 By element: Atomic # 1 Polarization: 22.63 SS G_CDS: -4.04 Total: 18.59 kcal Atomic # 6 Polarization: -2.58 SS G_CDS: -1.08 Total: -3.65 kcal Atomic # 7 Polarization: -33.39 SS G_CDS: 0.47 Total: -32.92 kcal Atomic # 8 Polarization: -35.16 SS G_CDS: -1.10 Total: -36.26 kcal Atomic # 14 Polarization: 18.93 SS G_CDS: -5.03 Total: 13.91 kcal Atomic # 16 Polarization: -0.81 SS G_CDS: -2.39 Total: -3.20 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.38 -7.96 -38.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608189420.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.225 kcal (2) G-P(sol) polarization free energy of solvation -30.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds